RNA id: XM_021573522.2


Basic Information

Item Value
RNA id XM_021573522.2
length 1817
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110497416
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81209657 ~ 81213316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGTCTGGGAAAGCTGTTGTTGCTTAATAATTTGTTAAACTTCCTGAACATTCCACTTCCTCCAGTTGCAAAAATGGACATGGACACTAGCAAACTACACTGGGGACATCAAGAATACAATCTTGGAGAGTTTGCTGAAAAATTCAAGGACTCCTTTCCTAAGATCATCAATGTGACGGTGGGCTTTCTTGGACAACAGGAACTGGACAGTATCAGCTCAAGCACACACATCATGGTCCACTCCCTGCTCTGCCAGCAGAGAGCAGTGTTTGAGAGCAAACATGGGAAAGTCCTGTCCCTACCTGTCACCATCTCCACTGTAGGCTTCTACATAATCAGAAATGATAGACGAGAAGGAATCCTCTCCAGACACACTCCTCTGGTGCTGCCCATGTATATGAAGGAGGTGCGTATTGCACtggcagaggggttggagggactCGATCAGGGCCAGTTTGAGGATGCCTGTGCTACATTGGGGGGGCAGATCGATGAACTGGGCCTCAGGAACCTTTTCATCTTTCAAGATATTACCATTTTGAATAAGCAAGAGTTGATTGAAAAGGGTCACGAATACATGGAGGTGAAGCCAATCTACATGTGCCTGAAGAGCCAGGGTGATGAAATCAACCTCTACCAGCACCTTGACTTTGAGACAACTGAGCCTCCTACTTTACAGAGAAAAGCAGCAAGacccccacctctaccccctAAACCACAACATTTACAAATAGCTAGACACAAACTTCCACCCCTTTCTCCATCATTGGAGAACAATTCCCAGTTCTACTCTGGCGGCTCATGGCACCCACTCTTCTGCTCCTTAGCAGAGGTGCCCTCTAATCTACGGGACCTGAGTGTGGCACAGGTGTGCTCCTGCCTGCGACTGCTCAACTTGGACCAGTACTGCCAGGCCTTCGAGAGGGAGCAGATTGACGGGGATCTGTTGTACACAGTTGAGCCCAGCATGATGAGGGAGACCCTGGGTATGGAGAGCCTGCACGTGGGCAAGCTTCTCCGCTTCCGAGAGGGATGGAGGCCCTTACTTGGGTCTTCTGGAGCTGAGCAGGTTGGGTAGTAATGGATTATCTGTAATGGGGATTATAATCAGATTATAAAAACTTCATTGGCAATCTGGGATCCAAACAACACTAAAGCGATCATAGAAGTGACATTTTGTACTCTTGTGCTGGATGGTCAATTATTTACATATTTTATGTTAGACTAAGTACCATTTACATTAGTAATGGCTAAAGTGTCATTCAGAATAAAGGCTACTTTTTGGAGTAATTCCTGCTGGGAAGCAAACAttcatccacacagcatgattaAAAGCACAGGTTTCAGGCCAATAGCCTTGTCCCGCTGTCACACCACAGGGCCGGTGGAGTCACAGACGTCATTGACATTTTCATTTCCATTGTCAAAATGTAATTGACTTTCAGTCATTTCATTTACCACAACTACAGCAATaagatacataaataaatacCTACATGAGGTCCAAGAAAATAAACATAACATACATTTTATGGCCAACAAAAAGCATGCAAAACAAAAGAAGGCACAAGGATCTAAgctgcactacatgaccaaaagtatgtggacaccccttcaaattagtggacttGGCTATTTatccacacccattgctgacaggtgtatcaaattTGAACACACAGCCAAGCaaactccatagacaaacattagcagtagaatggcccatactgaagagctcagtgacattcaacatgGCCCcattataggatgccacctttccaacaagtcagttcatcacatttctgccctactaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216636 lncRNA upstream 176181 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA upstream 176181 81032042 ~ 81033476 (+) True LOC118942351
TU216603 lncRNA upstream 217803 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 284935 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 487077 80721510 ~ 80722580 (+) True G191024
TU216836 lncRNA downstream 121762 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 129148 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 130312 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 323809 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 344405 81557721 ~ 81558024 (+) True G192082
XM_036956470.1 mRNA upstream 23763 81177783 ~ 81185894 (+) True LOC110497399
XM_021573490.2 mRNA upstream 23933 81177783 ~ 81185724 (+) False LOC110497399
XR_005039450.1 mRNA upstream 26737 81182792 ~ 81182920 (+) True LOC118944144
XR_005039451.1 mRNA upstream 29015 81180518 ~ 81180642 (+) True LOC118944145
XM_021573399.2 mRNA upstream 36567 81103304 ~ 81173090 (+) False csnk1g1
XM_036956474.1 mRNA downstream 26937 81240253 ~ 81251573 (+) False glsl
XM_036956472.1 mRNA downstream 26952 81240268 ~ 81251573 (+) False glsl
XM_036956471.1 mRNA downstream 28057 81241373 ~ 81251573 (+) False glsl
XM_036956473.1 mRNA downstream 28057 81241373 ~ 81251573 (+) True glsl
XM_036956475.1 mRNA downstream 38609 81251925 ~ 81263178 (+) False sh3gl3b
TU216654 other upstream 123477 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 123477 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 138782 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 141093 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 442943 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 1152969 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 1187797 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 1204930 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1439317 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1906011 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile