RNA id: XR_005038428.1


Basic Information

Item Value
RNA id XR_005038428.1
length 1611
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118942622
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81232166 ~ 81240770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGAGTTGACACCGAATGAGTCAAGTGTTGCAACGTTAGCTGTGTTTACATTTTTTGACCAACTGTGCCTTGAAGTTACAGGAGATTGATcaacgaatgcactgtattttcaaTAGTCACGGACAACCCCGTTCTCTTTGTCGGACACTATTGTTTAAAGTGTTCCATTTTAGATAACGTTACTTTATCCAAAACCATCTGTCTCTCACCTTCTGCCGGAGACTGTCCCCATCATCACGTCAGTTTGAGGGACCTTTTGCAGCAAGAAAATACCCTGGAAAGCATACAATGCCCGAAAAGACCAAAACGAATTAAACTGTAGGCCTATAGAAGCCGTCGCAGACACCTTCGTCTTCTGGGCAAGTAGCTCGAGACAAGAACAACGTGGTGACAATTTCAGTGCACGCGAAGCCGGAATCTGAATTGAACGCGATTACAGGTGTACACTTTTTTGTATGCGGAACACTGATGGCAAAATAAACTCCGCTAGTAAAGACTAATTGagtatttagttgttgtttttaccccccccccccccccccccaaaaaaaaaagatgtatttatttattttacgtaGGTAATGTACAATATGTTCATTCCTAGTTGTGTCTATAGTGGCAGTAGGTGTCGCTATTGCCGCACCGCCAACTGATGGGCAGGCTAATGCTGAGCTTGTTCGGTATCTCTCCAAGGTGCTGGCGTTGAAGAGAAGCGAAGTCGTTGTGGACAAGGTTTGAGAGCTATGAATGGACATCTCTGGATTCTTCATGATGCATGTTTATATACTGTGTTGCCAATAACAGAAAAGTTTCAGGAATTTAAACTAAAATGTTTCATCATGTCCTTATGCCTCTCTGCAGGGCTCAAGATACTGAGAATATTGTCAAGGTGGCACTAACTCCAGAGCAGGGGTTGGACAGGTTAAAGCAAGAGGCTGTTTGAATGTTAATTACACCCATAACAGAGGCTTCTCTATGACACCATGGATTACTTTTTAGTTCAGGTCCTATACACCTTCACAGTATTGGTTGATTTTCAGACATCTATGGAAACAGCTCAGTTAAGATAGTAGCCTACTTTATTAATCCCCAAAGGGGACATTTGTTTGCATCAGCTGATGCACACACCAATGAATGCACAATTTGTGACATGCACTATAGTCAAGCATTCTACAAGGATTTTAACTGTATAGGCGTctgaaatatttttttcccaaaactGTTGAAAGAACCCTTGTTTACTGAGGCTTCCTCAGAAATAAATTGCTGTCTTATCATCTgtgacattgttttttttttaagtaaaatttCAATCACAATGAGTCTTGCCTCAGGCATGGCTACTGATATGATTGTTATTGATGTATTATGTTCATACTGAAAAAGTTCACCCAAGTTCTACCTTCACCTCATGAGGTATCTGAGGTATATTTTTTAGCAAATATCTTAGATCATTTAGCCTTTTTTATTCATGCTTTTGTTGCCCCTAAAAcgtgtgttatgtttattttcTTGGACAGCATGTGGGTATTTATTTCTGTATCGAATTGATGTAGTTGTGGTAAATGAAATGAGATATTTGGCAATGGAAATAAAAATGTCAATGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217309 lncRNA downstream 53142 81142424 ~ 81185888 (-) False G191832
TU217303 lncRNA downstream 53330 81178122 ~ 81185700 (-) False G191832
TU217306 lncRNA downstream 53330 81179132 ~ 81185700 (-) False G191832
TU217308 lncRNA downstream 53330 81179132 ~ 81185700 (-) True G191832
TU217246 lncRNA downstream 152851 81083561 ~ 81086179 (-) False G191777
TU217757 lncRNA upstream 254386 81495156 ~ 81495468 (-) True G192224
TU217804 lncRNA upstream 297403 81538173 ~ 81539355 (-) True G192255
TU217806 lncRNA upstream 301347 81542117 ~ 81542378 (-) True G192257
TU217807 lncRNA upstream 302390 81543160 ~ 81543408 (-) True G192258
TU217808 lncRNA upstream 304337 81545107 ~ 81545322 (-) True G192259
XM_021573503.2 mRNA downstream 44931 81192564 ~ 81194099 (-) False cart2
XM_021573342.2 mRNA downstream 201844 81034004 ~ 81037186 (-) True tmem17
XM_021573329.2 mRNA downstream 211600 81024623 ~ 81027430 (-) True LOC110497288
XM_021573315.2 mRNA downstream 228116 81008700 ~ 81010914 (-) True LOC110497280
LOC110497262 mRNA downstream 240025 80995022 ~ 80999005 (-) True LOC110497262
XM_021573625.2 mRNA upstream 65311 81306081 ~ 81309081 (-) True LOC110497492
NM_001124507.1 mRNA upstream 73299 81314069 ~ 81323099 (-) True sycp3
XM_036933394.1 mRNA upstream 91228 81331998 ~ 81338259 (-) False actr6
NM_001160696.2 mRNA upstream 91311 81332081 ~ 81338250 (-) True actr6
XM_036956476.1 mRNA upstream 97654 81338424 ~ 81340860 (-) False LOC110497501
TU217319 other downstream 45185 81192528 ~ 81193845 (-) True cart2
TU217118 other downstream 317615 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 686546 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1478403 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1872461 79365849 ~ 79366569 (-) True G189256
TU219436 other upstream 1660870 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 1765060 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 1979252 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 2374796 83615566 ~ 83616034 (-) True G194491
TU221290 other upstream 2640770 83881540 ~ 83904451 (-) True G195427

Expression Profile