RNA id: XM_036956473.1


Basic Information

Item Value
RNA id XM_036956473.1
length 2324
RNA type mRNA
GC content 0.48
exon number 21
gene id glsl
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81240253 ~ 81251573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGTCCCATTTCAGTTCTTCCCATTCATTCAGAAACTTCAGAGCAAGCAGCATAACACACagcacatacactcacacacagagctTAGAGCTGGAGCAGGGAGACTCAAATGTGTTTTATCCCTACATTATTCCTCCCTGTTGCATTCGTCTCAGAAGTTGACAAAAGACATTGACAAAATAATTGTGGACCAAGTATCCAGTGAAAGTCTCATCCCTCAATGGAAAAAACTCCAAGCCAAGACACAGAGGATAATCCTTATCTATGTTTCCAAAGAACCCCTTCCCTAAGACGCAAATGGAGGAAACGGTATGGAGGTTTGGACGGCAACAAATTACTGGAGCCAAATAAGGAGGAGGACATGAGAGAAAATTACTTGATGACAGAGGCCCATGAAGAAAGGAATCCTTTGCCAGTGAAAGGGGCTGAGAGCCAGGATACGGCTTCATCAGGGAATGTTCCATGTCCCATGCCAAGAAATTCCTTTCAGTCCCAGTCTCAGAGACCTGTCAACTTAGTGAGCCCTGGATCAACAGGCCTCCCATCATTGGTTAGTAATGGAGCTCTGAAGCCCCCTCTGCCCCAGGCAGAACAGGAGAGGCCTGTCACCACATCTCCCCAGCCCTGGCTCAGTGTGGGCAGGACAGAGACCACGCAGGGACACTCAAAGAGGAGGGCGGCTGCTGATGTTCTCTTTGACAGCTTTGCCTCTGATGGGAGAGTCGGCATGAACCAGTTTTTTGAGACAGTGTGGAGCTCAGGCCTACACAGATCCGACCCCAGAATCAAGGACTGCTACTTTCATATGAGGAAACTGCAGGATGAGGATGGAACAGTAGACAGGAACACCTTTCAGAGGTGTGTTACAGGCTTTGTGTCCCTCATTCTGAAAGCTCTACAGGGAAGGTTTGTCATCCCTGACTTTTCCACCTTCACCGACGAAACTCAAAAGTTGTTCATGAAATGTAAACAGCTGTCTTCAGTCAAGGAGAAGGATAGTAGAGACAGTGCAAAATGGGGAGTCTCAGTCTGTACGGTTGATGGTCAGAGGCTGTCTTTAGGAGACTGGGCCGAATCCTGTGTTCTGGGGGAAGTATCCTGGCCTCTGGTTTATGGCATTGCAATAGACCAGCTCGGAGTGGACAACGTGCACAGATATGTGGGCGTGGAGGAGTTCTCAAAATATGACTCTCCTTTCACCCTCACCAAACAAGGAGTTCCTCACAGTCCGCTCATTGAGACAGGCGCCATTATTACCACATCTTTGTTACAGTTGGCTGCCAGTCTTGGtgcagaagaggaggaaaagtaTGAATCTGTCTTGAATGCTGTCAAAAGACTTTGCAATAAGGAACATGCAAACTTAAACTGCACAAGTTACCAGAGCTTGAGAAAGGACAGCATCAGACTACATGCCTTATCATTTTACCTTCAAGAAAAGAAATGCTTTCCGGAGACCGTTGACATAAATGCCACGTTGGATTTAATGCTGCAGTGTGCCTCCACAGAGGTCACGTGTGAATCAGGAGCAGCCATGGCAGCCTCGTTAGCCAATGGGGGACTCTGCCCTCTGTCAGGTGACCAGGTGCTGTCGCCCTCGGCTACAAAGAGTATGCTCTCTATGATGCAAGTGGCGGGAATGAACGACTACTCCAGAATATTCAATTTTAAGACGTCTGCACCAGCCAAGTCCAGTAAATCAGGAGTTATGCTGGCAGTTGTCCCAGGAGTTCTAGGCCTGCTGTGTTGGTCACCTGACCTAGACTCCTTTGGAAACTGCTGGAAGGCTGTGCACTTCTGTGAGgAACTCATATCAACATTCCAGCTACACAGTTTTGACATTCGAACACCGTTCAGACAGGTGCTTACATACAGGCAATGGAAAGCAGAGTCTGAGGGTTATCAGATCATGAACATCTTACTGGCTGCTTTCAAAGGTGACATACAATCCTTGCGAAGGTACTTCCTGTCTGGGGCTGACGTGAATGCCGTGGACTACGACGGGAGGTCCGCTCTGCATGTGGCTGCCTCCGAGGGTCACTCTGAGGTCATCCGGTTCCTGGTGGAGAACACAGGCACCAACTACTCCCTCAAGGACAGATGGGGTAACACGCCCATGCAGGAGGCTATGAGACACAGCCATGGACCTGCAGCCCAACTACTCAAGAAATATGAAGAGCAGCCAGTGACTCTGTGAGCAGTAAAGGCACATACAGGATCAACAGTTGGCGCTAAACAGAAGTTTCTCTCTCAATTATTTTCCAATACATGTGGAAATGTGTTGTAATTCCTATACGTTAATAAACTTTCTATGATGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216636 lncRNA upstream 207897 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA upstream 207897 81032042 ~ 81033476 (+) True LOC118942351
TU216603 lncRNA upstream 249519 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 316651 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 518793 80721510 ~ 80722580 (+) True G191024
TU216836 lncRNA downstream 83505 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 90891 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 92055 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 285552 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 306148 81557721 ~ 81558024 (+) True G192082
XM_021573522.2 mRNA upstream 28057 81209657 ~ 81213316 (+) False LOC110497416
XM_021573530.2 mRNA upstream 28057 81209657 ~ 81213316 (+) False LOC110497416
XM_021573537.2 mRNA upstream 28057 81209658 ~ 81213316 (+) False LOC110497416
XM_021573514.2 mRNA upstream 28057 81209660 ~ 81213316 (+) True LOC110497416
XR_005039450.1 mRNA upstream 58453 81182792 ~ 81182920 (+) True LOC118944144
XM_036956475.1 mRNA downstream 352 81251925 ~ 81263178 (+) False sh3gl3b
XM_021573576.2 mRNA downstream 354 81251927 ~ 81263178 (+) True sh3gl3b
XM_021573605.2 mRNA downstream 14447 81266020 ~ 81283516 (+) False nedd1
XM_021573590.2 mRNA downstream 14448 81266021 ~ 81283516 (+) False nedd1
XM_021573598.2 mRNA downstream 14448 81266021 ~ 81283516 (+) True nedd1
TU216654 other upstream 155193 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 155193 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 170498 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 172809 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 474659 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 1114712 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 1149540 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 1166673 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1401060 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1867754 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile