RNA id: XM_021573598.2


Basic Information

Item Value
RNA id XM_021573598.2
length 3271
RNA type mRNA
GC content 0.50
exon number 16
gene id nedd1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81266020 ~ 81283516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCCCCCGTGTATTTTTGGTTTGTACTAAAATCAACGTATTTTCTGATTGATTTCATACAAATTTACATGTTCATGGTTTTACAAACAAGTATCATTAGTCCAACGTCAGATCGCCGACTCCTTTGCCTATTCCTTTTTGTACCTTATGATATGCCGTAGTTAAGGGCGCTCAAACTCTTGTCGAAGTTTTTTTGTTGAAAATTTTAGGACAATTTCACAAGGACATCAGTTACAACCGTTACCATGGAGGAGGTGACGCGCCTGGTATCCTCAGGCGACTGTGTGAAGATCTGGGACTCAGCCTCCATGACAGTGTTGGAACAGTTCAACCCACACAGCGCTACACACCCTGTGGCCCAAGTGTGCTGGAGCAGCAACAATCAGTATCTTGTAAGCGCCAGCAGTATAGGAGACAAGCTGGTGGTATCCAGTCTCAAGTCCTCTCCTATCCCAGTGGTGGAACTTGCAGAGGGGAAAATGCAGACCCGCGTGAGTCTGAACTCGACGTCCCAGTACTTAGTGAGCGGGGGGCTTGATAACTCCGTCAACATCTGGGATCTGAAGGCCAAGAGGCTTCATCGTACCCTCAAGGACCACAATGAAGAGGTGACGTGTGTGTCCTTTAATGGCAATGACAGCTACATCGCATCAGGCTCCACCAGTGGTGACATCATCCTGCACAGCATCACCACCAACCTGTCTAGTAAGGCCTTTGGACACGGCACCAACCAGCCCATCCACGACCTGAAGTACTCTGTGGTGAAGCGCTCCCTGCTGGGCAGTGTGTCAGATAGTGGCTCTGTAGTCCTGTGGGACGCCAACACTCAGAAAGAGCTGCACGTATTTGATGGAGCCCACAAGGCCCCCGCCTCGGGCCTGGCCTTCTCCCCAGCCAATGACCTGCTCTTTGTCACCGTGGGCCTGGACAAGAAGATCATCTGCTACGACACCTCCAGCAAGATTGTTCTCCGCAGCATGCGTGTGGAGTCCCCATTGACCGCCATTGACTTCACTCCAGACGGGGCAGGCCTGGTGGTGGGCTCCACCCAGGGCAGACTGTACATGTACGACCTGCGCAACCTCAGCGCTCCCACCAAGACTGCCACCGCACACAAGACCTCCATCACCAGCTTGCGCTTCCAGAGCTCCCAGAGCAGACACCTAAAGTCCAGTAAAATGGCATCCAGCAAGTCTTCCAGCGCTCACACAAGCAAGAGGATCTCAGCCAGGCTGGGTAATACCTACTTACCAACAGCCACCCACAGCTCCACCTCTGCACCCCCCTCTAGCCTGCTTGCACCCCACACGGTAGATGGAGGGGATGGACAGGCACAGGGCACAGgctccAGTGTGGAAGTGGTCTCCAGAGAGGCGGAGGGCCAGCCTGGTGCTGACCGCCTGCCCAGTCTGGACAAGTTCAGTAGCGTGGGTAGAAACAGCCTGGACATCTTCTCCCCCGTAAGAGACGATTACAAAGCCCATGGGATGGGTGGTGATGCTCCTGGTGGAATCAAAGGGAATGGGACCAGTTTGGATATGTTCTCCAGAGAAGGAGAAGGGCAAAACAGCACGGAGAAGTTCAGCAAAGTGGGACGCAACAGTCTGGACATTTTCTCTCCAGTCAGAGAGGATTACAAATCCCATGGAATGACTGCAGATGTAACAAGTGGGAAGAAAGGAAACAATCTGGACTTCCTCCCTTCCTACTCTGGTGGACCCCCACACCGCAAGACTCCACTGGGCACACCTGGAGGAGGGCGCTGTTACAGCCCCCTGTCTGTCTTCCAGACCCCTCAACCAATCAAAGAGGAGGAGGCCGAGCCTCCAGCGCAGACAGACACACGGGACTTGAAAAGGTATGAGAAGGGTGGTGGTTCCAGTCTGGAGGGTGAAGGCCCCACCCCACACAGCCGACCAGCACAGCTGTTCTTCACCCCTGAACCCAGCCTGAGGGCCAATGACATGCAGGCCCAACTGCGCTACAACACACCCCTCAATGGTGGTCCGCCCACTACTGCACCAGGCCCTGCAGTTTCTTCAGTGGTAGCATCCTCTGTATCAGAgagaatagtggaggctgttggAGCAGAGGGTGGAGGCGCTCCCCTCACATCACTGCAGATTCAGTTCATCCGCAACATGATCCACGAGACCCTGGAAGACTTCAGGGACGCCTGCCACCGAGACATAGTGAACCTCCAGGTGGagatggtcaaacagttctacatTCAGCTGAACGAGATCCATGGTCTGATCGAGAAGTACTCGGTCAACGACACGCTGGTGGAGGAGATCGAGAAGTTGAGGGAGGAGAACAAACGACTCCGAGCCAATTACTGAGAGGTTGACTTACCACCTCATCACCCCTAGAAACAGTTGTCCCCTCAACTCAGACAGAATGTATTCCACAACGCATTAGGTCTCTGTGGGACAATGACTTTTTTTGTGTCCTGGTTTAACCCCCTTCGATCTTGGAATGAATTTACTCTTCAGTGCCTTACTGGTAGTTAAAGGGTTGACCAGTATGTTCTATGCAAAGTGTGCTATCAGTCACTTAAATCATCTGTGACCATGGTTATCAGTGCTGGACAATTTTAGCCCAATTCCAAACCGTTCTCTCCCCTCGCATAAAGAGAGGTCAACAAGGACAGGAAGATGCATTGCTTAAATACAGAGTATACCAAACGTTAGGAacagcttcctaatattgagttgcaatatttaacaagtcacatatgtAAGGAATCACAgctttcacttggtcagtctgtcatggagggatgttcttaatgttttgtgtacatCTCTTCAGCATAGTATGGTTGAAGTTGATAGTATCTTTGGCTTTTACTGGCACACTGAAACAGAATGAGGGCATGCCTTTGACCAATCATGATACTGTCTTTGGACTAGGCAAGAAAATGCCATAGTGGTCATCAATTTCTAATAGTACGCAAAGTGGTGCCAAGCTCCCTCTGAAGTGTGCTTGCGCTGCCAAGTTTGCCCATCAGTTATTTGTTTcttttgttattgttgttttgtGAAGAGGAATATAAATAGTAGATGTGTACAATTTTGTTAATGTAATTCATTCTAGTTTCAAGGTGACTGTTCAGTTTGCACCATGGATGGTTCTATAGAGACAGCATGttaaaattattttatttaacaatgAAATACAGCTGCAACAATGGCAAAATAGGAATTCAGAGACAAAGTACCACGATGTAAACATCTCTCCTATATATTGATAAAAACTAACATCTGA

Function

GO:

id name namespace
GO:0071539 protein localization to centrosome biological_process
GO:0005813 centrosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16547 NEDD1; protein NEDD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216636 lncRNA upstream 232545 81032042 ~ 81033476 (+) False LOC118942351
TU216637 lncRNA upstream 232545 81032042 ~ 81033476 (+) True LOC118942351
TU216603 lncRNA upstream 274167 80988887 ~ 80991854 (+) True LOC110497237
TU216557 lncRNA upstream 341299 80914300 ~ 80924722 (+) True G191167
TU216402 lncRNA upstream 543441 80721510 ~ 80722580 (+) True G191024
TU216836 lncRNA downstream 51562 81335078 ~ 81335608 (+) True G191402
TU216843 lncRNA downstream 58948 81342464 ~ 81342689 (+) True G191405
TU216844 lncRNA downstream 60112 81343628 ~ 81343850 (+) True G191406
TU217572 lncRNA downstream 253609 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 274205 81557721 ~ 81558024 (+) True G192082
XM_036956475.1 mRNA upstream 2843 81251925 ~ 81263178 (+) False sh3gl3b
XM_021573576.2 mRNA upstream 2843 81251927 ~ 81263178 (+) True sh3gl3b
XM_036956472.1 mRNA upstream 14448 81240268 ~ 81251573 (+) False glsl
NM_001124577.1 mRNA downstream 215071 81498587 ~ 81515506 (+) True rhcg1-b
XM_021573777.2 mRNA downstream 331256 81614772 ~ 81641800 (+) True LOC110497588
XM_036956506.1 mRNA downstream 419267 81702783 ~ 81772438 (+) False LOC110497605
XR_005038448.1 mRNA downstream 419269 81702785 ~ 81759748 (+) False LOC110497605
XM_036956494.1 mRNA downstream 419324 81702840 ~ 81772438 (+) False LOC110497605
TU216654 other upstream 179841 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 179841 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 195146 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 197457 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 499307 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 1082769 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 1117597 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 1134730 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1369117 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1835811 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile