RNA id: XM_036933394.1


Basic Information

Item Value
RNA id XM_036933394.1
length 1471
RNA type mRNA
GC content 0.44
exon number 10
gene id actr6
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81331998 ~ 81338259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTTCTTGAGCTATGATTGGCCAGAAAGAAGCACGCTAGAAGAGCGCACGATAAATTCGATATTTGCTCAGctatgtagctagctactgtagtttGATTGTTTATTGAACTACAGTTTAAGTGGTCCTGGTATAATCTCGCAAGTTACAGAAAATGACCACTTTAGTTCTTGATAACGGAGCTTATTCGGCCAAAATTGGATACAGCCACGAAAAAGTCAGCGTTATCCCAAATTGTCAGTTTCGCTCCAAGACGTCAAGGCTGAAGACTTTTACCGCCAACCAACTGGATGAAATCAAGGATCCCTCAGGACTTTTCTACATTCTCCCTTTCCAAAAGGGTTACCTTGTTAATTGGGATGTCCAAAGAAAAGTGTGGGATCACCTCTTTGGAAAGGAAATGTTTAAGGTGGACTTTGCAGACACCAGTGTAGTGATCACAGAGCCCTACTTCAACTTCACCTCCATTCAGGAGTCCATGAATGAGATCCTGTTTGAGGAATACCAATTCCAAGCAGCTCTCAGAATTAATGCTGGATCCCTGAGCGCCCACCGCTACTTCCAGATGAACAACCAGGAGCTGTGCTGCATTGTGGTGGACAGTggcttctccttcacccacatAGTCCCCTACTGCAGGGGGAAGAAAATGAAGGATGGGATATGCAGGATCAACGTAGGAGGCAAGCTACTGACCAATCATTTGAAGGAGATTATTTCATATAGGCAGTTGCATGTCATGGATGAGACCCATGTGATCAATCAGGTGAAAGAGGATGTGTGCTATGTATCCCAGGATTTCTACAAGGACATGGATATAGCACAGTTAAAAGGAGAGGACAACACAGTGATGAGAGATTATGTGCTACCAGATTTCAGCTCCATCAAGAAGGGCTTTTGCAAGCCAAGAGAGGAGATGAACTTCACAGGGAAATACAAGACTGGAGAGCAGATCCTGCGCTTGGCCAATGAGAGGTTTGCCGTCCCAGAGATGCTCTTTCACCCCTCAGACATCGGCATCCATGAGATCGGCATCCCTGAAGCGCTAGTCAACTCCACTCCTACCCATGGGAAGGAGGCAAGCTCCTGGCAGAAAACCCAGACTTTGATGAGATGGTGGTCACTCGCGAAGACTATGAGGAGAATGGACATTTCATTTGTGAAGAAAAGTTTGATATCTAAAGGACTTTAGTTGTAATCATATGTCTCACAAAGGTCATTGGACAGAGGATGGCTGAAGCAACTACAGCAGATccaacaattacattttttttaaactgaaaatGTAATTGGAATTCAGATTTCTAGTACTGTTATTGGGATGCAGACTTTACATTCTTACGTCTTCGGCTATCATTATAAATGTGTGAACATTGAATCACAGGTAACAAACCACCCCCAAAGCCCCTCACTCATCATTAAATTGCTCCAGTGAGTTTATTTCCTAAATAAACACATTCCTCAAGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217376 lncRNA downstream 34364 81232539 ~ 81297634 (-) True G191890
TU217374 lncRNA downstream 91249 81232166 ~ 81240749 (-) True LOC118942622
TU217303 lncRNA downstream 146298 81178122 ~ 81185700 (-) False G191832
TU217757 lncRNA upstream 156897 81495156 ~ 81495468 (-) True G192224
TU217804 lncRNA upstream 199914 81538173 ~ 81539355 (-) True G192255
TU217806 lncRNA upstream 203858 81542117 ~ 81542378 (-) True G192257
TU217807 lncRNA upstream 204901 81543160 ~ 81543408 (-) True G192258
TU217808 lncRNA upstream 206848 81545107 ~ 81545322 (-) True G192259
NM_001124507.1 mRNA downstream 8899 81314069 ~ 81323099 (-) True sycp3
XM_021573625.2 mRNA downstream 22917 81306081 ~ 81309081 (-) True LOC110497492
XR_005038428.1 mRNA downstream 91228 81239030 ~ 81240770 (-) False LOC118942622
XM_021573503.2 mRNA downstream 137899 81192564 ~ 81194099 (-) False cart2
XM_021573342.2 mRNA downstream 294812 81034004 ~ 81037186 (-) True tmem17
XM_036956476.1 mRNA upstream 165 81338424 ~ 81340860 (-) False LOC110497501
XM_021573645.2 mRNA upstream 165 81338424 ~ 81341110 (-) False LOC110497501
XM_021573637.2 mRNA upstream 165 81338424 ~ 81341814 (-) True LOC110497501
XM_021573668.2 mRNA upstream 12244 81350503 ~ 81358590 (-) False LOC110497525
XM_021573676.2 mRNA upstream 12244 81350503 ~ 81358620 (-) True LOC110497525
TU217319 other downstream 138153 81192528 ~ 81193845 (-) True cart2
TU217118 other downstream 410583 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 779514 80552127 ~ 80552484 (-) True G190857
TU215157 other downstream 1571371 79760039 ~ 79760627 (-) True G189806
TU214582 other downstream 1965429 79365849 ~ 79366569 (-) True G189256
TU219436 other upstream 1563381 82901640 ~ 82912504 (-) True G193745
TU219446 other upstream 1667571 83005830 ~ 83007976 (-) True G193755
TU219891 other upstream 1881763 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 2277307 83615566 ~ 83616034 (-) True G194491
TU221290 other upstream 2543281 83881540 ~ 83904451 (-) True G195427

Expression Profile