RNA id: NM_001124577.1


Basic Information

Item Value
RNA id NM_001124577.1
length 2068
RNA type mRNA
GC content 0.48
exon number 11
gene id rhcg1-b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81498587 ~ 81515506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATATATAATATTTGCCGTCTTTCTCCATAAGGCACCAAAGGCAACTGAACCATTGTAACGATAACACAATGGGTTGTATACAAAGCTTCAGGCAATGCTGTGACCGGCCGAAAAATACCTATGTCCGAATTAGTCTTCCAGCAGTGTGTTTCGTATGGCAAATTGCCATGATCATCTTATTCGGCATTTTTATCCGTTATAACGAGGAATCCGACGCACATTGGATAGAGCATAAAACATTTAATAACATATCCAGTAACATTGAGAACGACTTCTATTTCAGATATCCAAGTTTCCAGGATGTCCATGTGATGATCTTTGTGGGCTTCGGTTTCCTCATGACCTTCCTGAAGCGCTACAGCTTCGGTGCCGTTGGCTTCAACTTCCTCATCGCCGGCTTCGGCCTTCAGTGGGCACTTCTGATGCAGGGATGGTTCCACTCTCTGGACCCAATGGACGGCAAGATCAAGATCGGCGTGGAGAGCATGATCAATGCAGACTTCTGTGTAGCCAGCTGCCTGATAGCGTACGGGGCGGTGCTAGGCAAGGTGAGCCCAGTCCAGTTGATGGTGATGACGCTTTTTGGAGTCACTCTGTATGCTGTGGAGGAGTATATCATCCTCAGCCTCATACATGCCAGGGATGCTGGTGGCTCCATGGTGATCCACACATTTGGGGCTTATTATGGTCTGTCCATCTCGTGGATGCTGTACCGGCCCAACCTGGACCAGAGCAAGCATCGGATTGGCTCCGTCTATCATTCAGACGTCTTTGCCATGATCGGAACCCTGTTCCTGTGGATGTTCTGGCCTAGTTTTAACTCGGCCATCTCGGACCACGGGGATGGGCAGCATAGAGCAGCCATCAACACCTACCTGTCCCTGGCCGCCACTGTCCTCACCTCCATAGCCATCTCCAGTCTCTCCCAGAAGACCGGCAAGCTGGACATGGTTCACATCCAGAACGCCACACTGGCCGGGGGAGTTGCCGTGGGAACGGCAGCGGAATTCATGCTAATGCCTTATGGGTCTCTGATTGTAGGATTCTGCTGTGGCATCATCTCCACCCTGGGCTACATTTATATCACGCCATTCATGGAGAAACATCTGAAGATCCATGACACGTGTGGCATCCACAACCTCCATGCCATGCCTGGGGTCATAGGGGGCATTGTGGGCGCCATCACTGCTGCAGCCGCCAGTAAAGGTGTCTATGGCAAGGAGGGGTTGACAAACACGTTTGACTTTGATGGGAAATGGAAAGATATGTTGCCGACCCAGCAGGGAGGACACCAGGCAGCAGGGCTCTGTGTTGCCCTCTGCTTTGGAATCGGAGGAGGAATCATTGTTGGCTGTATCCTGAGGTTACCAATCTGGGGGGATGCTCCTGATAACAGCTGCTTTGATGATGACATCTACTGGGAGTTACCTGAGGATGAAGAGAACAATCCACCTACCGTGGAGTACAATAACCACATGCGGAACAAGGACTTAACAGAATCGAATATATCTTTGGAACGGAGACAGAACTGACGCTAGAGCCTGATGTCATCTCCCCCCTGCACTTTCAACTAATGGTCCTATCCTACACTGACTCCTGCTGGACAGAAACCAGTCATCTCCTCTTCACCACTCTTTATACTGTTCTGTTCATGGAATGTATAGAAACACTGATACTTGTTATCTTTAATGAAATCACATTGGAAAATAATAAAATAGACAGATAAAATTGATGGTGGCATGTTTTATCACCAGTCAGGCATATGTCGAATCACAAGCAGACTCTTAATCATTCATATTAACTGTAaaataggctactgtatgtgactgtacaCAATGTCTTTATACAGCCCACACCTCCGGTGATGCTGGTGCTCCAATAATTATTGCAGTTTTTTTAGGTCCCTTTGCTGGGGTGTTTCATAGGGGGGCCAAGGGGGGACCAAGAACCGTTCATGGGTGGCAATGGGAAATCAGCAAATTGGCTTCAACTATGATGTATTGAATAGCTGTTTCAACTGGTCATTTTCGTCTGCCCTAATCtatttaaataaaacaataattcA

Function

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216844 lncRNA upstream 154737 81343628 ~ 81343850 (+) True G191406
TU216843 lncRNA upstream 155898 81342464 ~ 81342689 (+) True G191405
TU216836 lncRNA upstream 162979 81335078 ~ 81335608 (+) True G191402
TU216551 lncRNA upstream 171163 80910728 ~ 81327424 (+) True G191161
TU216636 lncRNA upstream 465111 81032042 ~ 81033476 (+) False LOC118942351
TU217572 lncRNA downstream 21619 81537125 ~ 81537623 (+) True G192071
TU217583 lncRNA downstream 42215 81557721 ~ 81558024 (+) True G192082
TU217635 lncRNA downstream 84305 81599811 ~ 81601654 (+) True G192121
TU217594 lncRNA downstream 132843 81648349 ~ 81648582 (+) True G192092
TU217660 lncRNA downstream 139519 81655025 ~ 81658267 (+) True G192144
XM_021573605.2 mRNA upstream 215071 81266020 ~ 81283516 (+) False nedd1
XM_021573590.2 mRNA upstream 215071 81266021 ~ 81283516 (+) False nedd1
XM_021573598.2 mRNA upstream 215071 81266021 ~ 81283516 (+) True nedd1
XM_036956475.1 mRNA upstream 235409 81251925 ~ 81263178 (+) False sh3gl3b
XM_021573576.2 mRNA upstream 235409 81251927 ~ 81263178 (+) True sh3gl3b
XM_021573777.2 mRNA downstream 99266 81614772 ~ 81641800 (+) True LOC110497588
XM_036956506.1 mRNA downstream 187277 81702783 ~ 81772438 (+) False LOC110497605
XR_005038448.1 mRNA downstream 187279 81702785 ~ 81759748 (+) False LOC110497605
XM_036956494.1 mRNA downstream 187334 81702840 ~ 81772438 (+) False LOC110497605
XM_036956501.1 mRNA downstream 187347 81702853 ~ 81772438 (+) False LOC110497605
TU216654 other upstream 412407 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 412407 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 427712 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 430023 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 731873 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 850779 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 885607 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 902740 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1137127 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1603821 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile