RNA id: XM_021573777.2


Basic Information

Item Value
RNA id XM_021573777.2
length 4518
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110497588
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81614772 ~ 81641800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGACCGGTTTTCATAATAAAAATGTATGGATGATGACAGATTTACGGGGTAAAAGGAACGAGGACTGTCGGAAGAAGCCCGATGCTATTCTACTCTCAGATTTTCACACGAAAGGAAAATAAAGCATAAAACAACAATTCAACAAATACGTCAGCCGTGTCCGGATTCCATAAATGTTGATCCTTCGTAGCAAATGCCCCTCGAATTGGCTAAACTTATTAATTCCCGGTGGCATGACCTCGACTAATGTTATGTCAAATTGATAACGCGTTTGACTCCTGACTAACGTTTTTTTCCGCATCTAGGTAAATTGTATTTAGACAGATATTACTACATTCCATCACGCATTTACAACGCATGTAAAATgcatagatatacagtatatccacGTTTATCTGGTTGAAACCTGGTTGACAATTCAATTGGAAGTCCCTACGTAGCTACGTCAACTTTGCGTCATAGGTTTCCGCCCAGGCACGCAAGGACGGGGGAGATAATCGAAACTGCAGCTAGTACAGTTGTTGTGGTGATGTAATGTTACCCTTTTGGTGACTACTACGGATGGCTGTGTGTGCCAGGCTCTGCGGAGTGGGTCAGTCGCGGAGGTGCAGGCGGCGACAGCGGCATAATCAACAGGACCAGGGAAGCGACTCCGACATGGACGACGAGGAAGGGGTGCGGATTGTGGGCAAGACACAAGCCGTCACTGGCGGCCCCGAAAACCCCTCGGCCGCGGCAGGGCCGAGTGTGGCCCACGAAGCCACTGCTGAATGTGGTCGTGCAAATGTCAGACTTTCGTATGGGCAAAGTGCAAGCACCGGACCACCGAACCCGCAGTCCCTGTTGGATCTGCCCCCAGAGCTTTTGGTGGGAATATTCTCCTCGCTGCCGGGCACAGAGCTTCCAAACCTTGCGCTCGTCTGCAAGACATTCAGGCAAATCCTCAGCACAGAAACCATCTGGAGAAGGCGATGCACGGAGGAGTTTGGCATGAGGGAAGACCTGCGCAAGATAGAAGTGGTGGGTGTGTCCAGTCGGGAGCTCTATGCCAAACTGCTGCACCCATACAGACACATCCTGGGTCTTTGGCAGCCTGACATAGGGCCGTACGGAGGGCTGCTCAACGTGGTGGTTGACGGGCTATTCATCCTTGGCTGGATGTATCTGCCCCCCCACGACCCTCGGGTCGAGGATCCCATGAGGCGGCGGCCACTCTTCCGCATCCACATGTTGGAGAGCAACAAGGCAGCAGTGGAGTGTATGTACGGACACAAGGGCCCTCACAAGGGGGACGTCCAAACTGGGAAGAAGGACGAGTTCTCGACCAAGTGCAACCAGACAGACCACCACCGCATGCCAGGGGGGAGGCaggagGAGTTCCGGACGTGGCTtgaggaggagtgggggaggacACTGGAGGACATCTTCCATGAGCACATGCAGGAGCTCATACTCATGAAGTTCATCTACACAAGCCAATATGATAACTGCCTGACGTACCGGCGGATCTACCTCCCTCCACGACTGCCCTCTGATCTGTTGCAGCCGggcctgttcaaaggcacctacggCAGCCACGGCCTGGAGATCATCATGCTCAGCTTCCATGGGCCTCGCGCCAGGGCCACCAAGCTCACCgGGGATCCCAACGTTCCAGCAGGCCAGCTAACGCTCGATGTGGACCTGAATCGGCCTGTGCATCTTCCGGACCTCGAGCACCAGCGCAGCGTGGAGGAGCTGTCTCGCCTGGTGCTGGGGGTGCATGAGGAGGCGCAGCAGGAGGCGCAGAGCCCAGATGTGGCCCCCCAGGGGGTTGCTGTTGGAGAGGGGTCTGTGGCCCCCCAGGGGGTTGCTGTTGGAGAGGGGGCTGTGGCCCCCCAGAGGGCTGCTGCTGCAAAGGGGGCTGTGGATGGTGACGGGGCAGAGGGTCTGGAGTTGGCTATGGAAGCCCAATCAGAGAGCCGCCAGCCTgggcccagcagcagcagcagtgctcCCTCGGAGGCCCAGCCCTTTGTCCTGCCTCTGGGGGTCATGGCCCGCAACGAGGTGTACCCCCGTACCTGCAAGATGTGTTTCTACGGGACAGGCCTGATTGCCGGCCACGGCTTCACAAGCCCGGAGCGCACGCCTGGCCTCTTTATCCTGTTTGACGAGGACCGCTTCGGCTTCATCTGGCTAGAGCTCAAGTCGTTCAGCCTATACAGCCGCCTGACCGACCAGCTGGCCCACGCCTATGCCCCCAATATGGAGCTCTTTGAGGCTATGCTGCGCAACATGCAGTCCTGGACATCTTGATGGGGCAGATCCACACGTCTCGTACAAACATGTTTACTTAGGCCTCTACACACACCCCGATGTGTTGACTGCACCTGGAATACCTCTAGGCCCCTAGTTTGTAAACTATAAGTAATTCCCATAGTTTTTTTCCTGATTAGGTCatgtggttaggaaaaactcttGGCCCTAATTATCACTGTTATGTATGTATATTTTCCCTCTATAGACCCCGAAAACACAACACGATATTTACCCTCACCTATCCCTGTAGAATCACTACTGTATGCGCACACAGCTTTACAACCCAAACACCTCGACACCGTCCCACACATTTCTGGGCCTGGACAGAAACAACCTTTAGCCCCCTACCCCTTAGGCACCTAAAAGTCCCCCTAGCCTATCGGAGGGAAATGTGGAGATAGTACCATATCGCTTATTATCTAATAGTCTCTCCCTGTCCAATGTTTCCCCTCCTCTTACCTCCACTTgacctcagtatctctactgctGAGGCATGTCCACAGGTCATATGATATGACactaaggctgcgtttacacaggcagccctattctgatattttttccactaattcgTCTTTTGACCAATTTGatattttcacatcagatctttttcacaGCTGATCTGacggtcaaaataccaattagtagCTTCCTGTGTAAACCCAGCCAAAGGCTTCCTCAAAAGcttcttatttatttttaaaccaaAGAAGAGGATTTGTTGACGTTTCATCCCACAAACTCTAGAACAAAGTATCTGTGCCTCTGACTGCATTTTTAGCCAAATTCTTTTGCTTTTTTTCACTCATTGATCTTTGGACCACTCAGATCAGctttgaaaaagatctgatgtgattcgtcaaaagaccaatttattgaaaacaaatcagaattgggcttcctgtgtaaatgcagcccaTGAGTTCTAACTATATACCATGTCTGCATTGCCTAGGGATTTCCTATTCATTCTACTAAAGCTATTATTGTGTAACTATTTGAATGCCTCATGTTTGGATGCATGCAGCATTTAATTTGTTTAATGCCACCTGTCTCTAATTATCTTATTCACAATCCGATTAAACACTTTTGGTTTGCTGTATATTGCTTATAGTTTGGTGCACAGATGGCATTATGGAATTGGAAAAGACTGCATCTCAGGCACTTTCACTCTTTTCGTGACTCGGTCAAGGAAATTATACTGTAACTATGTTAATATTACACAATGGGGCATGTGCATATCAGAAACGATTACGTTTTATTTGCAAAATACTTCTGATGGATAGTATGTAGTAAAATGGAAATGTTGAATGAATGGAGATTTGAAAATTGCGTGTTTGGTACAAGCTtgtgctgtactgtagctgtatcaGCCATTCTTAGTTGGACTGATAGCATTGTCATTTGGATGCTTTTAATAACAGGGTGTTATAAAGATATTGCAACATCCTCAATAATAATGACCGTTTGCAAAACATTGCACAACACAAAATGTAATTCAAGGTACTCTCATACTTTACATTATTTACATTGTGAAAAATGTGTGTTTGTCTCGCATTAGCCAACAGTGGTCTCCTATTGCAAGTGAACTTTTCTAGGCAGGTCAGTGGATGGTTGTCTCTCAACTCCTCTATGGGTCCCTTTCCTTGACTCCTTTCCTTCATGACCACAAATGGACCAGGAGGGTTTTTCCACCATATGGCTTTCACCAGTCTTTTCCTGTCACCTGACATGTCAGTGATCATGGAGGGCAGGACATAAGGAAAATAAGCTAGTGGGCAGTATTGAGATAGTCACTATCTCATGGGAGGCTTCATTCAAAGCAGTACTTTTGTATTAGACTACAGCTTTACTAACATTAGCAAAAAACTAACTCTATAGAGAGTAAATAAGTAATATATATTAATGAAAGGAAACTATTTAATAAGTATGttttgatattttttatttttgggacAACTAGACATTTTTTAATCATTGCTTGTTGATTTGTGTTTTGTAAGCACATCGCTCATCTGTTTGTAACTAATGCTTCTGTGCACCGCTGTTTAAATGAATCACATTTGTAAATTGAGTCTTGCGCTTTATAAATTGCCAATCCCAGTGGCACGACTCCGCTGGAAACCGTTTGACCTGGTGAGCTGCTCTTAATCTGATTTCAGGGAGCTTTGCAGCCTACGTGCTCTTTCTCTTCTCAATAAAATAAACAACACA

Function

GO: NA

KEGG:

id description
K10308 FBXO31; F-box protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217635 lncRNA upstream 13118 81599811 ~ 81601654 (+) True G192121
TU217583 lncRNA upstream 56748 81557721 ~ 81558024 (+) True G192082
TU217572 lncRNA upstream 77149 81537125 ~ 81537623 (+) True G192071
TU216844 lncRNA upstream 270922 81343628 ~ 81343850 (+) True G191406
TU216843 lncRNA upstream 272083 81342464 ~ 81342689 (+) True G191405
TU217594 lncRNA downstream 6549 81648349 ~ 81648582 (+) True G192092
TU217660 lncRNA downstream 13225 81655025 ~ 81658267 (+) True G192144
TU217589 lncRNA downstream 132622 81774422 ~ 81775759 (+) True G192087
TU217971 lncRNA downstream 143224 81785024 ~ 81792855 (+) False G192394
TU218068 lncRNA downstream 290186 81931986 ~ 81932495 (+) True G192485
NM_001124577.1 mRNA upstream 99266 81498587 ~ 81515506 (+) True rhcg1-b
XM_021573605.2 mRNA upstream 331256 81266020 ~ 81283516 (+) False nedd1
XM_021573590.2 mRNA upstream 331256 81266021 ~ 81283516 (+) False nedd1
XM_021573598.2 mRNA upstream 331256 81266021 ~ 81283516 (+) True nedd1
XM_036956475.1 mRNA upstream 351594 81251925 ~ 81263178 (+) False sh3gl3b
XM_036956506.1 mRNA downstream 60983 81702783 ~ 81772438 (+) False LOC110497605
XR_005038448.1 mRNA downstream 60985 81702785 ~ 81759748 (+) False LOC110497605
XM_036956494.1 mRNA downstream 61040 81702840 ~ 81772438 (+) False LOC110497605
XM_036956501.1 mRNA downstream 61053 81702853 ~ 81772438 (+) False LOC110497605
XM_036956498.1 mRNA downstream 61195 81702995 ~ 81772438 (+) True LOC110497605
TU216654 other upstream 528592 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 528592 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 543897 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 546208 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 848058 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 724485 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 759313 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 776446 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 1010833 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1477527 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile