RNA id: XR_005038448.1


Basic Information

Item Value
RNA id XR_005038448.1
length 3835
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110497605
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81702783 ~ 81772438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCGTGATCGGCCTCACACtcctgtacagtaggtggcgtTGTATGCACATGTCAGTTGGTTGCGACCCCCCCCGAAAAAAAGAAGTCGAGGAAGCGAGCCGACGTTCAGCCTTTTTCTCTCGCGAGGAAGGACGCCGTTATCGGAATCCCTACAAACAACACGAGAATTCATCATTCACACGGTCTGAGTGATGTCGGACCAAGATTTGGCAGATATGGTACAGATAGCAGTGGAGGACTTGGGCCAAGGCGACCAGACTGATGTTTTGGACAATCATGAAGATTGTGATGACAAGCCTGACAGGAAAAGGCCAAGGGTGGACAACAGCTCCCAGGACACATCTCTAAAGACCTTGTTGTACTCCATTAGCCAGACGATCTGCCAGCGTCTGGACAACATGGAGGCTAAGCTGCAGATGGTGGAGGCGACGTGCCGGGCCCTGGAGAGGAAGCTGGATGCTGTGGTCAACAAGAACCAGGCGCCCATCCAGGTCCCCATGGTGGCCGGCTCCCCTCTGGGTGCCACCCAGACCTGGAATAAAGTGCGTTGTGTTGTTCCACAGACCAATGTGATAGTGAGCCAAGATCGACCGAAGGGCCAGGAGGAGCCAGTAACTCGAGGGGCAGATTCCCTGGAGAACCTCCTCAGCAACACGGTGGGCGGGCGGAGGCAGAACACGTTCCTCGTGAAGGTGCCGGCGCCGGAGGACAGCCAGGAGGACCAGGAGAGCGGTTCAGAGGCCAGTGACTCTGTGTCCAACAGCGGCCAGACCAACAACGCCCAGAGCACCCAGAACGTCACCCTCATCACCCTCAACTCAGAGGATGACTACCCAGCAGGTACGTGGCTTGGCGACGAGAACAATGCAGAGATGCGCGTGCGCTGCCCGGTGTCGCCGGGCGACATGCTCCACATCAGCACCAACTGCCGCACGGCAGAGAAGATGGCACTGACACTGCTGGACTACCTATTCCACCGTGAGGTGCAGGCTATCTCCAACCTGTCGGGCCAGGGCAAGCACGGCAAAAAGCAGCTGGACCCACTCATGATCTATGGCGTACGCTGTCACCTGTTCTATAAGTTTGGCATCACTGAGTCAGATTGGTACCGTATCAAGCAGAGCATCGACTCCAAGTGTCGCACTGCATGGAGACGTAAGCAGCGCGGCCAGAGTCTGGCAGTCAAGAGCTTCTCCAGACGTAGTGCCAACGCACCGGGAAGCTCAGAGGGTGGCGCTGTGGTGGAGGCAGCCCAGCAGACTCTACACTACACCCTGGCCAACCAGACTGTCCAGCAGGTCCAGATCCATCGCATAGGAGAGGACGGACAGGTGCAAGTGATCCCTCAGGGACATCTCCACATTGCCCAGGTGCCACAGGGGGAAGAGGTGCAGATCACACAAGACAGTGAGggGAACCTTCAGATCCACCAGGTGCATGTTGGGCAGGATGGACAGCTGTTTTGTCTTTTTGTGCAGGGCTGGGCTGACTTGCCTGAAGACTGGAAAAGGGTTGAACTTTTGATGGACCGCAGATGGATATGACAGAACGTGTAGATGAATATGACAGAACATGTAGATACAGATGCATATGACAGAATGTGTAGATGCAGATGCATATGACAAAACGTGTAGATACAGATGCATATGACAGAACGTGTAGATGCAGATGCATATGACAGAACGTGTAGATGCAGATGAATATGACAGAATGTGTAGATGCAGATGCATATGACAGAACGTGTAGATGCAGATGACAGAACGTGTAGATGCAGATGACAGAACGTGTAGATGCAGATGCATATGACAGAACGTGTAAATGCAGATGCATATGACAGAACGTGTAGATGCAGATGAATATGACAGAATGTGTAGATGCAGATGCATATGACAAAACGTGTAGATACAGATGCATATGACAGAACGTGTAGATGCAGATGCATATGACAGAACGTGTAGATGCAGATGAATATGACAGAATGTGTAGATGCAGATGCATATGACAGAACGTGTAGATACAGATGACAGAACGTGTAGATGTAGATGCATATGACAGAACGTGTAGATGCAGATGACAGAACGTGTAGATGCAGATGAATATGACGGAACGTGTAGATGCAGATGCATATGGCAATGTCTCTGTGGTCAGTGTATTTATTTTCTCACAGTAGGGTCAGTTTCCCTGTGGTCAGTTTTTGTATAGTCCGTCTGTGATTACCGTTATTCAGACTACGATCTATTGcccttcagtcagtcagtgtacGTTCACTCAGATGTCACTCACTCAGCAAGACCCCTCAGATCAAGGCTATTTATTGCCCTCTAAGTGGTCAGTGTATATATGGACCCTTTGTCCAATCACATACACTCcctgtcagtgtgtgtttatAGTCCCACAGTCCATTACAATAATTACAATACCACAGAGCAGTGGTCCTGGAGCAGATTTGaggagttaagtgccttgctcaagtgcacaaTGTCAGTAGGTAGCACATGGAATATTGAAGCCAGGAAGCCTCCAGCTGCCGGCTCATTCCCTGCAGAATTCCTCCGTCAGCCTTGGGATTTGAACCGGCAACTCTCTGTTTACTGGCCCCCCTTTTCAAGACTACCTTCACCCCCCAATCACCCTCTCTGTAGTTCCCTATGTTGCATCCGTTTTGTGGCTCTCATCTGGCTAGTGTAGCCAGGGAGTCTTCCTTCTCATCTAATAGTTCCCATCAGCCCGGCTGGGACTGGCGTGTCCTGGTGAGTCGGCATCAGACATTGTGGTGAAAAAGAAAAATATGGCAAAATCTTCCGGAGCCTGACACAACCCACCAGGCTCCAGGGGGGTTAACACGACTCACGAATCACGTAACCGAGTCACCAACTTCAAAGCGAAGGTTGTGGTTTGGTGAGGGGGTGGAACAGGGCGGGTTGATACGGTAAGGGGGGCACAAACAGCATCTGTAATTGGGGTTTGAGGTTTGGGTTTTTTCTGCAGACAAGCAGATTCTGATTCATCCCCAAATTGTGAATGTCTGTTAAGCCTGCACCcagctgctctgctctactccacTCCACTGGCATGGGAGTAAGTCAGACTGGTTAAAGCTGGAGACAAAGCACACATGGGAGTAAGTCAGACTGGTTAAAGCTGGAGACAAAGCACACATGCAAGAGGCCATGTAGGTCATgcaaggtggagagagagacatgttgtaGTGCTGTGTAAGGTAGTAATCGCAAGAGAGATGCATGGTTTTATTTAAACGCACACACATCGAGTTCACTTAATATTTTCCTCCATCAATCTTGCTGGGTCAGGTGTGACAGTATGATTGTATGTTAGCTTGGCATGTCTGTTCAAATATTCCACAACTTAttacagtaggcctactgtatgttattaaATTAGGCCTAGACATCATAGCTCTTACACTAGGGCCTTGGGgctatagggtgtgtgtgtgtcaatgtaaaTCTACAGGAATACTCCATACCATGTTGCAGCTGTACTATCCTGCTCTGTTATTAGTGAgtgtgttaaatgccgagctttGGCACAGCTTGGCTGTAGTTCAACACAACAGGGTTTAGGGGTCTCCCCTTCTCTAgatgtttctctctttccctctcctctttttctttttttcccatCTCTATCTCAGGTGGCGATGAGAGTGACATGTTCAGTGATCTGTGTGTCCCGGTGCTGCGTGGGGCCCAGCTGATAGCGGTGGCGTCAGCTGACGGGGGGGCCACAGCAGTGGAGGGCTCCCCCCTACAGGCCAGTGACATACAGgtgcagtatgtccaactggcccaAGTCAACGACCACAACGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217660 lncRNA upstream 44518 81655025 ~ 81658267 (+) True G192144
TU217594 lncRNA upstream 54203 81648349 ~ 81648582 (+) True G192092
TU217635 lncRNA upstream 101131 81599811 ~ 81601654 (+) True G192121
TU217583 lncRNA upstream 144761 81557721 ~ 81558024 (+) True G192082
TU217572 lncRNA upstream 165162 81537125 ~ 81537623 (+) True G192071
TU217589 lncRNA downstream 14674 81774422 ~ 81775759 (+) True G192087
TU217971 lncRNA downstream 25276 81785024 ~ 81792855 (+) False G192394
TU218068 lncRNA downstream 172238 81931986 ~ 81932495 (+) True G192485
TU218098 lncRNA downstream 214982 81974730 ~ 81975731 (+) True G192515
TU218109 lncRNA downstream 228150 81987898 ~ 81989027 (+) True G192526
XM_021573777.2 mRNA upstream 60985 81614772 ~ 81641800 (+) True LOC110497588
NM_001124577.1 mRNA upstream 187279 81498587 ~ 81515506 (+) True rhcg1-b
XM_021573605.2 mRNA upstream 419269 81266020 ~ 81283516 (+) False nedd1
XM_021573943.2 mRNA downstream 606435 82366183 ~ 82392379 (+) False LOC110497665
XM_021573934.2 mRNA downstream 606436 82366184 ~ 82393779 (+) False LOC110497665
LOC110497686 mRNA downstream 658046 82417794 ~ 82426875 (+) False LOC110497686
XM_036956613.1 mRNA downstream 848007 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 848007 82607755 ~ 82644833 (+) True LOC110497700
TU216654 other upstream 616605 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 616605 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 631910 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 634221 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 936071 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 606537 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 641365 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 658498 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 892885 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 1359579 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile