RNA id: XM_021574038.2


Basic Information

Item Value
RNA id XM_021574038.2
length 2138
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110497717
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82739598 ~ 82755517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccttccggttactagttcaacgctctaaccactaggctaccctgctgccccaaaatGTATGTCTGCATAGTCGATGTCTGAAATATAATTATAATCCTTGTGCAGCTAGctaaacaaaaacatttgttgAGTCTTGGACTATTGCCCTGACTGCTATCAAATGGGTGTCATGACTACCTAGCTTTCTAATCAGAGAAATTGTTGACTGTTGAACGGACATCATGGAGCAGCCCTTGGCACCTGGCTTGTTTACTGGGCATACTCAGCTTCCTGGGGTCGGTCACACCCCTCCATGTAGCTCCTGTGACGATGGGCCTCCGCTCCTCCTTCTCGGCCACACGGACCAATAGCATTCTAGGAGGCACCCAGAAGGCTGTGACCTTCAACAGGCTCCTGGTCAACGCAGGAAGTGACTTCAACCCAGATACCGGCCACTTCCGCTGCAGAATCCCTGGGGCTTATTACTTCTCTTTCACAGTGGGGAAATATCCCGAGAAGATGCTATCTGTCATACTGGTGAAGAATGGGCAGGAGGTGCAGGCTATGGCCTACGATGACTACAAAAAGAAAGGGCGGAAGGTCCAGAGTCAAAGTGTCATGATCAGCCTGAGGGCTATGGACACAGTGTGGCTGATGCTGCAGGACAGTCCTCAGCATGCTCTCTACAGCACCGCTGGCCCTTACATTACCTTCACCGGTTACCTGGTGTACCCTGACATCCCCGCACCTGGCTATCTCAACAACCACCTGTCCCTGCCAGGGCAGCTTTACCCCAACCCCAACTGCCTTCCTCCTGGAGACCACAGGCATGGCTTGAGCGGTAGTGCTAAGGCCCCTGAAGAGCCTCGCTCTGCCTTTTCCGTGGCCAGGACATCCCCGGTCCTGGGGGAGAATGGTGGCGGGCACCAAGAGAAGGAGCCTCTGACCTTCGACGTGGAGTACGTCAACATCGGAGCACACTTCAACAAGACGTCGGGCCGCTTCACCTGCCGCTACcctggggcctactactttgccTTCACGGTGGGGAAGCATCCGCACAGGGCAGTGTCAGTCAAGCTGATGACGGGCCATGGCGAGGTGCAGGCCATGGTGTTCGACGAGGACATGTCCAGAAGGAGGGAGATGCAGAGCCAGAGTCTGCTGCTGCCACTGCGTAGAGGGGACACTGTGTGGCTCTACAGCCAGCAGGATGAGCGCTATGCCATCTACAGCAACCAGGGACGCTACACCACCTTCTCAGGCTTCCTGGTCTACCCAGACGCTGAGCCCACCACCACAGCCAGCCAGGACTAGGACTAGGACAGAACTCAAGTCTGAGAGCTCTGAGTTCTTCAAAACACACTGGACCCTCCTTCAAATGTACATGGTGCTATGGTTACAAAACCAAAGTTGAGAAAGTGTGAATGCTTTATAGGCTTTGTGTAGAACCGCTGCAGTCACTTTCTGGGTGTGGATTGAACAACAGCAGCAGCTGTCGTTGAAAAATGGGGCAAAGATGTACATATCTTATTCACAGATACACATTTGTTTGCTCTTCTATTGATTAAATAGCCATTTTCTTTGAAGTGTTATACCATTCCACAAGATGGTGTTGTgagtcattttttgttgttgatacaTCGACAAGCTTATGACATTATCACACATAATCATGTAATGTTTCTTATTATAAGCACATTTTCTGTAAAACGatggaaaatgttatgttttgtgtTTGGCTGCGTTAAACCAAAGTTATAGGCAATATGTTAGTATATGATGCTGGACCATCAGGATTCCTTGGACACCTCATGAATCTCATTGACTTTTTTTTCTCATTCACCAAAGACTATGAGTTATAATAAGTAGAGCTTTCCTTTGTAATCTTTATATATACAGACATTTTTTAGTGACAGAATTATATATCCTTACTGAGCAGATGTTTATGCAAGTCTCAGAACGACTCATAAAACCCTTTAATACTTTAACTTCTGTAGTGATTGCACTGAGTAGAGACTATTGTGTAAATATTGTATAGTTTGCCTGACTGACTGTATGGAGTTAGATAACCTGAATGTGATGTAGTTATGAATGTTTGATGTATTCTGGATACATAGTGAAATAATATTGATTAAAGGTCATTTTACAAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219032 lncRNA upstream 6248 82731058 ~ 82733350 (+) True G193390
TU219031 lncRNA upstream 7126 82731058 ~ 82732472 (+) False G193390
TU218911 lncRNA upstream 60264 82645338 ~ 82679334 (+) True G193281
TU218874 lncRNA upstream 122121 82531117 ~ 82617477 (+) True G193245
TU218889 lncRNA upstream 191706 82547354 ~ 82547892 (+) True G193260
TU219034 lncRNA downstream 917 82756434 ~ 82756779 (+) True G193392
TU219035 lncRNA downstream 15698 82771215 ~ 82778495 (+) True G193393
TU219063 lncRNA downstream 45749 82801266 ~ 82801558 (+) True G193415
TU219048 lncRNA downstream 50082 82805599 ~ 82825934 (+) False LOC110497777
TU219049 lncRNA downstream 50082 82805599 ~ 82826762 (+) False LOC110497777
XM_036956613.1 mRNA upstream 94765 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA upstream 94765 82607755 ~ 82644833 (+) True LOC110497700
LOC110497686 mRNA upstream 312723 82417794 ~ 82426875 (+) False LOC110497686
XM_021573934.2 mRNA upstream 345819 82366184 ~ 82393779 (+) False LOC110497665
XM_021573943.2 mRNA upstream 347219 82366183 ~ 82392379 (+) False LOC110497665
XR_002469701.2 mRNA downstream 50023 82805540 ~ 82826758 (+) False LOC110497777
XM_021574156.2 mRNA downstream 100400 82855917 ~ 82889873 (+) False arntl2
XM_021574146.2 mRNA downstream 100401 82855918 ~ 82889873 (+) False arntl2
XM_036956832.1 mRNA downstream 101183 82856700 ~ 82889873 (+) True arntl2
XM_036956773.1 mRNA downstream 138252 82893769 ~ 82954111 (+) False ppfibp1b
TU218970 other upstream 85168 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 317416 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 335763 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 351077 82366285 ~ 82388521 (+) True LOC110497665
TU216654 other upstream 1653418 81083828 ~ 81086180 (+) False LOC110497320
TU219583 other downstream 363810 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 803403 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1840893 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2254947 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3380099 86135616 ~ 86136608 (+) True G197069

Expression Profile