RNA id: XM_021574156.2


Basic Information

Item Value
RNA id XM_021574156.2
length 7057
RNA type mRNA
GC content 0.44
exon number 16
gene id arntl2
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82855917 ~ 82889873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCggaaagaatagggttttggAATAAACGCAGAAAATAAGGTCCGAGGTTAACACAGGTTTAGGGTAGtatatacgttttgttctatgccATTATAccgtcagttaacatgacctttatgtgttttgttttatttcataCATTCTTCAAATTTCACAAAAAGCGAAAGAACAAAACGTATCGCCTAAACCTGTGTTTACCACAATCATTAGTTTCGGTGAATATTCCCCCCAAAAGTACATTAATTTGCCTTATAGGCTTGGTCCAACGAACCATGGCAGAGTTATCGCTTATAAAAAGGCGCCATTACTATTTCTTTCTATGTCCTCTCACCCCGACTTAGAAAGAAAATCCGTGAAGAGCCGTGCTTTTTTAATGGGTGATTTGAGTGCAGTGATGCCTACCATACTAAACCATCTTTGGCCAGACGGTGGATGGACGCTGTGTCTCCACTTCCGCAAGTTCACGGATTTGTAGGTTACGTTGTGTCCCTATTACACCGTGTACTTTCCTTTCACGTTTTTGTCTCCCCGATCGCTCCACCCTTGGAAGAATAAATCAGTCAATTATACAACACACTGCCCCCCTCACTATCCAATACTACCGCCTTATCCACATGCATTGGAGTCTTGGGCCCCGGCGTACCGGCTCCAGCCATGTCGGCAAGGAATGCAGCGGCTGGCGGCGGTGACAGAACGAAAGGGGAACAGACAGCTTGATGACCCCCACCTCAGCCGCTGGCATGACCTCAGGAATGGAACTGCCCCGGAAACGCAAGGGAAGCATGgacatGGAAATCAAATCAGCCTCCAATCTGGTTGCAGATATGAAAGATGAAGAAGACCGATCTGAAGGGGAGGACTCTCAGGCTAAAATCAAATGCTTCAGggaACCTCACAGCCAGATCGAGAAGCGGCGCCGGGACAAGATGAACAATCTGATCGACGAGCTGTCAGCCATGATTCCCACCTGTAACCCCATGTCCCGCAAGTTGGACAAACTCACCGTGCTCAGGATGGCTGTGCAGCACCTCAAATCCCTCAAAGGTTCCACCTGTTCCTTTGCTGAAGCCAATTATAAGCCTTCATTCCTCCCTGATGACGAGCTCAAACACCTCATTCTCAAGGCTGCTGACGGGTTCCTGTTCGTAGTGGGTTGTGATCGCGGAAAAATAGTCTTTGTCTCAGAGTCCATCAACAAGACACTGAATTACAGCCAGACGGAACTGATTGGACAGAGTCTCTTTGACTACATTCACCCAAAGGACATGGGGAAAGTAAAGGAGCAGCTCTCAGCTTCTGAGTTATATCCCCGCGAGAGACTAATAGATGCCAAAACGGGCCTGCAGGTCCAGGCTGACCTCCCGGTCGGAGCAGCTCGGCTGTGTCCGGGCGCACGACGCTCCTTCTTCTGCCGCATGAAGTACCACAAGATCTCAGTCAAACAGGAGGACAAGGAATTCCAGTCCAGCACATCGAAAAAGAAAGAGTCTGAGAAGTACTGCACTGTCCACTGCACAGGCTACATTCGCAGCTGGCCCACCAGTcagctgggggaggaggggggtgagggggagactgACAAGGACAGCTCCCACTTCAGCTGCCTGGTGGCCGTGGGCCGTGTCCACCTCCACGCCGTCTCTCTTGTCAACGGGGCCAACGAGGTCCTGGTCAAAGCAACGGAGTTCGTCACGCGCTACGCCATGGATGGCAAGTTCACCTTCGTCGACCAACGAGCCACCACTGTCCTAGGATACTTACCCCAGGAGCTGCTTGGAACGTCATGCTACGAATACTTCCATCAAGATGACTTGCCACATTTAGCAGAACGACATCGAAAAGTGCTGCGGAGTAAAGAGAAAATAGAGACACATTGCTACAAATTCAAAACGAAACATGGCTCTTTTGTCACACTACAAAGTCGGATGTTTAGTTTCATAAATCCCTGGACCAAAGAAGTAGAATACATAGTGTCAACCAATACTGTCATGTCCAGTGACCACAGTCCAACAGACAGATCTGGGGACAAAGCAGAACCGTCAAGTAATTCCAAGGCTTCAGAAGACGATGGCAATAAGTCTCTTCCCATCATCCCGGGGATCTCCAGTGCTTCCAGTACCATGATCTATGCAGGGAGCATCGGGACCCAGATAGCTAATGAGCTGCTGGACTACAACAGGATGAACTCGTCCCCATCCAGCGGTAATGTCAGCCCCTTCACTGTGCTGAAGGACAAGTCTCCTCTGCAACTTACACTGTCCAGCAGCAGCGTGCCAAATGGAGAGGTGGCAGACCTAGAGATGCCAGGGAAGTCCAGTTCAGAGGAAGGAGAACAACAAGAACTCAAAAGACCACAATTCCCTGCAGGAGAATCACTCATGGTGGAAACTTCCCAGCTGGATATGGAGAATATGATGGACCCTGGCCTGGGAGGCCTTAGTAATGACGAGGCGGCCATGGCAGTGATTATGAGCCTGCTGGAGACGGACGCCGATCTGGGCGAGGCCGTGGTCATGGATGAGATCAACTGGTCCCTCTGAACTGGTCCCTCTTTGTCTCATCTCTACTGAAACTCTCCACGTCTCACTAAAATTGACTGCACTGATCTCTCTGAAACTTGCCACAGTTCACTGAAATTCTAAGCCTCTCtgaaattcccccccccccccggctctCTGAAACACACTACAGCTCTCAATAACTCGACCCAAACACAGCATTTCCCTCAGTACAGTTCTCTCTATCACCAGGTATCGTCTCCcttattaaaacatgttttatttatttattagttGTTTTAGTTTTTTCCACATAAGCTGTGTAATCTTCAGGTggctgtttacattttttttttttaagacaaTGGGATCGATTGGCGATAAGGGACAACAGCTCTCCACCACTTTCagtgggaggaagagaagagtctGAGGCTGTGCCTACAAAGCCTTTCAGGTGGCCATTTTGACTATTCTTGGCGGCTAATTGTCCGTATCTGCTTTCCTCAGACCTACAGATcacgttcccctgctcagacgttgcataCGTCTACCAATTATTGTGTGCCAAGTCATTGactgtgtcatcgactgacagattgccATAACATATGATGTGATTAGCTGAtacgtaaaatacctatccaggggTTGTAAGGTCTGTCATGCATCAGCTacgcctgggcagaggaacgcgcccacagtctctccccatctctgGAGTGGCCTTAGGAGGCGTGGTCTATTTGAGCAGCAGCCTTTTTGTGCCCCCACGTGTCACATCCTATCCTATAAGACTATGGCTGAATCCCAAATCACTCCCTTCACCCCTTGACCCTCCAGTTAAGCTTTCACACTTGCCTCCGCCATATGCACAAGTGTCCCAAAGCAGAGGTAGTGAAAATTGTCATAGGTGTGGGGGCTAATTAGACAGCCAAGCAAACAAGGCTGCAGGCTTTAGAGCGAAGTGCTATCCCGACACGCTCCGCGATATGTTTTGAGTTTGCGCAAATATTTTTATTTGAATATACAAGTATTTGAATATTGGAATGCATTTGGCAATACACTTGGAAGGTATtggcatgtatttgaaaataaccagtatttatacaaatatttaaatACTCTCATgcttttgaacccaggtctgtttggTCCTAGGTTTATTTTAAATAATATATTTGGAAGTAACTATTTGAAAATACTTATGCTTAAATAGTAGGCTATTTTATAGGAAATCATTTGAAAATACTTCTAATAGAAGTAGTTGATTCGGCACCAGATTATTTtaaaatacttaaatacacaGGTCTGGTTGACATTGACATTGAGAGTCACTGATAGTCCGCTATCAATGTGCCACTTAGAGATTTTCCCACCATCAGAGTAACTGGGCGTGTCACGGCCTAACCACCAACTCTCTGGCACACAGCATTTGGACCGACGTGTGAAGACCTGGTATGGATAAATGCCACATTCACCCACCATCTTGACACATTCTTAAAAACAGAAATGGAGGTTTAAGGGAATAGACTTAAATTCTATTATTAAAATAGAGATTTATCAAATACCTTATTTCAAAATGTACAGTTTATAAATGATCTCTGAATCAGGGATCACTCAGGGAGCAACAGAACAGAAACCACCCCTCATTCCTCCATTTCATGTTTATTCAATcttttacacttttttttatcACTTGTAGCAGTATTTTATTTATCAGGCTATATATCACACACCTATAGTACGTAGGAGTACAGACGTTGGTATTGTTGTAAAGTGATTTGTTGTTTTCTTTTACAACGTTTTTCGGCTTTATGACGCCCATGCTTTGACTTAATTTCATGTGTCATAATGCACTGATAGACAACAGTCTTATATGGCTCGTTCAGAGGTGCTACTTCAGAGGTAAACCGAGTCGTTTGTGGTGTGTGGATTCTTTAAGGGACTACTATGCAGAGTGAACATTCCAGAACATCTATAtacatctctgtctctcgcttATTATTCAAACCAGGGGTTGTAACCATAATTATTTTCGTTACATTCCACTGTTACgcccagcaaaataaagttctgaagcGGTTCAAAACCCCTAAAAAAATAATGGTTTATATCATTCCTTTCTCTTCCTTTTTAAACCTCTTTAGCTcaacattaaattacttcaccaatcagtgtggATAGAGCAGCTTTCTATGGAGTGGGCAAGCTGTAATAGATGTTTACATGCATTGGACAGACATGTGTAGGGCACAAGATGTGACTGAAATTTTTCAGGTGGGGAGGGAGCGAGCAATAGAGGGTGGAGGAAGCTTGGCTTGAAGCGCTGGGCATTTTGTTAttacatgcattatctgaattaggatCACAGCATTATACTTGcggaggagcagattcaatgaaGGAACTTTGAACGTCTTTGAACTTCCAAGAGTTCGCTTAACTTTGGACCagaagctttgtgtgtgtgtgcagagcgtCACCAGAAttttaaataaaaacacatttgacctttttgtagttaataaagcCAACTTGAAACATGATAaatatagtatccttaactagtaTTGTGTACGTTTATCCATTCTTCTCAAATAGAAAAATCTATCTCCCTAATTTCGGAATAATCACACTTGTAATGTCAGCAGGCCACCACACCCTACATAATCAATAGACTACATGCCATATACAATACACACTCGAATACGACCCCCActacctgtctgtgtctgttttggaGGGCGAGAGATAGGTAGCCTACACACACTGGGGGAAAAAATGCCCTGAATGTAAAATAACAAATtaacctgtttttttttgtgatcaAATTTGTTTTGCTATTGGTAAGACAGGTACACATGGACAAAGAAACAAGTAACAAGACCTGGACAAGACAAAAATAGCCAGCTACTTTATTTGTAGTTGCCCATTTGACCATTGCCCCACCAAACTATAAGAAGCTGAAGCTGGATAAGCATGCTTTTTAAATGTGGTGGCTTGAGGTCATGTCAGTAAACCCATCACCCGCCATCTATGGTCACACTGATTGGTCTATGGTCACCATGCTTTGAATGAATAATGGTTTTGTGGCAGCCTTATGTGAGGTAAGACTAAAGAACTAAAGTCATGAAATATCTTTAAAATTATGCTGTTTAAACTCCAATGCCTGTGTGAATACTGCTGTTTTAGCCCATCCAGCCACGGTCGTTACTTTTTAAAGTTTGTTCACATTTTGTGCCAGTAATGATTTTGATTCGGTTCTGAGGgtgggatggatggaggtgtATTGTGAGTTCTGAAGAACACTGTCTCTGGAGCTCCACATTTACTTCAATACTGAGGGAGGCACCAATCCACTAGGACCCCcactacctgtctgtctgaagTGCCTCATGCCATTTCTGCATGGATACCTGAGAAGTATATTACAAACCATCAGTCCCACCTTACCTCTCAACACATTAAATGGTATGGCATTTCCCCTCTCgactttcccctctcccctcccctcttgtATCATGGGATTAATCGGAAGTATGAAACACGATTGGTGGCTGGATTTGACGTGCCAATCACGAGCCTGATCACAGATGATGGCATTCAACAAGCAAGCTGTGAAAGCATGTGCCATAGATACAGGCTGGTCCTATAAAAGGAAAAAAGTTGTATGATTTTAGTTTGTtttaagattatttttttttcCTAATATCATTGTACTGTATTTGTGAATGCCCTGAATTGTGAAACCGTTAAAGTATGTTTGTACAGTAGGGCTGCCGCCCACCCTATTGTCATTGTGTGGTGGCATTGAGTGGAAGTCGagttctgttctgtactttggTTAGAGTCAACCTCAACTGCCCCTGTCCCAGTTTGAAATCCTAAACATTATCCAAGGTATAGTTAGATTTCGTTGTATTTTTGGTTCCTTTTATATCCCGCCCAGTTGATCTTATTGCATGCAGCTGCTTTTGcatcctttttttttttgtttaatgcATTTTTTGTTTTCGCCTTATAAGACAAACTAGGGTATGAGAGACCGGTATGTGTGTAGGCGTGTGAATGAGTAACCATAAACCATTATCTGTGGACTGATGAGGCTTCAGAAACTGTTTCCCAGACTAGTGCTGTTTCCCAATTGATGCGGATGCCCTAGAATCTAGATATACCACAAACCAATGTTTTATTGTGCTTGTGGCACAGGGATCCCAGTTGGCCACAGTTAGCCTTGCCTTTTAGCCTATCCACACACAAGCAAGGCCCTTCTTTACCTGTGGGCTCCGAGAAGAGCTGTTTGTTAGCAGGGGAGGCTAGTCAGTGACGCATTCACAGCTTCAAAATCACCtgtctgttttttaaaatatactgtatttgtTACTAACTGTTAGTGtatctgttttgtttgttttaataGTGGGCTATAGAAACACTTAAAGATTCATGGCATTATTGCTGCTTCAACAGGTCTGGTTTATGGCAGAGAAGCTGTCTAAGCTGTCTTGTGAAAAAAGGTTATTCTTAATAAACATTAGTTTCCTTTTACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219049 lncRNA upstream 29155 82805599 ~ 82826762 (+) False LOC110497777
TU219050 lncRNA upstream 29155 82805777 ~ 82826762 (+) False LOC110497777
TU219053 lncRNA upstream 29638 82805777 ~ 82826279 (+) True LOC110497777
TU219051 lncRNA upstream 29941 82805777 ~ 82825976 (+) False LOC110497777
TU219048 lncRNA upstream 29983 82805599 ~ 82825934 (+) False LOC110497777
TU219134 lncRNA downstream 64958 82954831 ~ 82955057 (+) True G193474
TU219176 lncRNA downstream 131923 83021796 ~ 83022094 (+) True G193513
TU219562 lncRNA downstream 202203 83092076 ~ 83092412 (+) True G193857
TU219560 lncRNA downstream 206691 83096564 ~ 83099389 (+) True G193855
TU219558 lncRNA downstream 215059 83104932 ~ 83105834 (+) True G193853
XR_002469701.2 mRNA upstream 29159 82805540 ~ 82826758 (+) False LOC110497777
XM_021574038.2 mRNA upstream 100400 82739598 ~ 82755517 (+) False LOC110497717
XM_036956673.1 mRNA upstream 100400 82740871 ~ 82755517 (+) False LOC110497717
XM_021574029.2 mRNA upstream 100400 82750234 ~ 82755517 (+) True LOC110497717
XM_036956613.1 mRNA upstream 211084 82607755 ~ 82644833 (+) False LOC110497700
XM_036956773.1 mRNA downstream 3896 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956779.1 mRNA downstream 3896 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956806.1 mRNA downstream 3896 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956812.1 mRNA downstream 3896 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956787.1 mRNA downstream 3897 82893770 ~ 82954111 (+) False ppfibp1b
TU218970 other upstream 201487 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 433735 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 452082 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 467396 82366285 ~ 82388521 (+) True LOC110497665
TU216655 other upstream 1769737 81083828 ~ 81086180 (+) True LOC110497320
TU219583 other downstream 229454 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 669047 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1706537 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2120591 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3245743 86135616 ~ 86136608 (+) True G197069

Expression Profile