RNA id: XM_021574182.2


Basic Information

Item Value
RNA id XM_021574182.2
length 2191
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110497803
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82964528 ~ 82973775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTAAAGATATTTCAAAGCGCTTTAGATGGTACAGTCATTTTCTACACTATAACgttacttgcttgttttgtcacatacactgaaattaggcgaacaaTTATAagtttagcaaccaggaaatggcggagcgatttctagATAGGGCATCTTTAAGAGGCCTGTTAtttgaataaaaataaatgacCAGTCCGACAAAATAATTTGATGTTGTGACTATTTTCAACAGAAATGCAAGAGCGCTTTGGCTATAGCTTACTTACAGCCATTTGCTACACAGTTTCTTCCTCTACGCGCACGCGCGGTTTGTGACAATGTATTTTGTcgactgtatatacagtgtttcgGGTGGAGGGGCAGAGTTATTGTTGCAATCGTTCAAGACAACTTTGAACACAGCATACCTCTGGACCTCGAAAATTGTAAACTACCAAAAGCCTACATTTGGAGGTAGTATGGCACTACGGTCTGCTCTGCTAGGATGTGGATTGCTTGTCATTTTGCTGGCAGTGGTGTTCCCCCCTTTGGATGCAGCAAGTCAGGCAATAAACCAAGAGTTGTCAGACCTCTTCAATGAGCTCTGGAAGCTGGATGTGAACCGCATGAAGCCTGGGACTGACTATACGATCTCTGTGCAGGGCAAAGCTGGCTATGTCTCTCAAGGCAGTAACCATGCCAGGGACCATGCCTCATCGCCTCTCTTCTCCAATGTCAATGAGAACAAACTGAAGACCATTACTACCTTCTCCCGCTTCATGAAGCTCCTGGACAACTATGAGAGGTCAACAGGCGTGGCAGAGCATGTCAGCCGAGAAGAGGTCACAGAGAACAATCTCTTCCTGGATGCCGTTCTGAACACAGAGGTCATGAAGCATGCCCACAGGTATCTGGTTAGCAAGGGCCACTCCCAATCAGACCTGAGGACGTTCAAGCGTCAGCTGTACACCATCTGGTTCGACCTCTACTACAGAAGTGGAAGTAAGGACTCGTGCGGATTTGAGCATGTGTTTGTTGGAGAGACTAAATTCGGAAATGAGATTGCTGGTTTCCATAACTGGGTCCAGTTCTACCTGCAGGAGAAGAGCAGGAATTTGGACTACAAGGGATACAAAGCCAGGGACCATGACATAcctgaccaAGACGACCACGTCCTGAACCTCCAGTTCAGCTGGCACGGTTTGGTGAAGCCGGTGGGCAGTGCCTTCGTGGGGGCCAGTCCGGAGTTTGAGATGGCCCTGTACACCATCATCTTCCTCATCAACACACATCGGAGCACCACAGTGGTGGTCAACATTGACGAATGTCagctggaggtggtggtggtcagGCACGGGCGCTCCATTGGGACAGCCTACCCCAAACTGCTTAGCAGCAACAACAGACACCTGTAGTTGGAGGcatcaaacacacgcacacaagcataGATTTATGAATAagactctgcacacacacacacacatacactgtttTGGACTGGGCATTTAACCAGGCCAGTTTGCTTCACAATTAGGCACATAACCTTTCTTTAGCTGACTGCACTGTGTAATCTGCACAACAGGAACATAAATGGACACATCTGATACTCCGGGCATGCATGTGTAAGATATAAAACCATGGACTTGTGTTGTAAAGTCTGATGTTTTCCTACAAGTTGAAAAGTTAAGGTAAAGAACATGTTTCAGAAGAAGAAAGAAAGTTTAACTCACTGTCTGATTTCAACAGCACAACAGCAGTGACTCATGGCAATGTCGTGCCTCATTTAAATAAACCATTTATAGAATTTGTTTATAAGCCATGTCATGAAGTCTAAATTAAGCATTCTGTAAATATGGCCCTTCCCAACATGCACTGCCCATCTGGACACCTGCTTGGCCAATGTGTAGAGTTTTATAAGTGCCTATGTCAAGGCACAATAATTATTTCAATACAAGCCATTCTACCATTTTCCAAATGTGCTCATACAACCAGTAGCCCATACTGTAATAAAATGTGCATTACCGAGTCAAATGTTGGTCAATGTATTATTGCATTCTCTATATGTGCAGTCATGAACAGCCAGTTATGAATAGGCTAGCCTACTTATGCAATTGGTTAGTATATGCTACTATAAAATTTTTCTGTCATTTAccctttaaagtaactgtccattgTTTCCCGATTTCTattaaatatgacctataattaattacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K14648 ENDOU, PP11; poly(U)-specific endoribonuclease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219134 lncRNA upstream 9471 82954831 ~ 82955057 (+) True G193474
TU219049 lncRNA upstream 137766 82805599 ~ 82826762 (+) False LOC110497777
TU219050 lncRNA upstream 137766 82805777 ~ 82826762 (+) False LOC110497777
TU219053 lncRNA upstream 138249 82805777 ~ 82826279 (+) True LOC110497777
TU219051 lncRNA upstream 138552 82805777 ~ 82825976 (+) False LOC110497777
TU219176 lncRNA downstream 48021 83021796 ~ 83022094 (+) True G193513
TU219562 lncRNA downstream 118301 83092076 ~ 83092412 (+) True G193857
TU219560 lncRNA downstream 122789 83096564 ~ 83099389 (+) True G193855
TU219558 lncRNA downstream 131157 83104932 ~ 83105834 (+) True G193853
TU219587 lncRNA downstream 154348 83128123 ~ 83128591 (+) True G193880
XM_036956773.1 mRNA upstream 10417 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956779.1 mRNA upstream 10417 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956806.1 mRNA upstream 10417 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956812.1 mRNA upstream 10417 82893769 ~ 82954111 (+) False ppfibp1b
XM_036956787.1 mRNA upstream 10417 82893770 ~ 82954111 (+) False ppfibp1b
XM_021574195.2 mRNA downstream 4472 82978247 ~ 83002869 (+) True si:dkey-103i16.6
XM_021574253.2 mRNA downstream 142313 83116088 ~ 83118600 (+) True LOC110497829
XM_021574264.2 mRNA downstream 145446 83119221 ~ 83123796 (+) False LOC110497837
XM_036934286.1 mRNA downstream 229587 83203362 ~ 83204801 (+) True LOC110502176
XM_021574284.2 mRNA downstream 240454 83214229 ~ 83216248 (+) True LOC110497849
TU218970 other upstream 310098 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 542346 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 560693 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 576007 82366285 ~ 82388521 (+) True LOC110497665
TU216655 other upstream 1878348 81083828 ~ 81086180 (+) True LOC110497320
TU219583 other downstream 145552 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 585145 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1622635 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2036689 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3161841 86135616 ~ 86136608 (+) True G197069

Expression Profile