RNA id: XM_021574195.2


Basic Information

Item Value
RNA id XM_021574195.2
length 1953
RNA type mRNA
GC content 0.53
exon number 9
gene id si:dkey-103i16.6
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82978247 ~ 83002869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAAGGATTTTCCCGCACTGAAAGCTGGAAGTGACGTACTTCCTTCGCGGTAAATGGTGCTGCGTGCGACAGATGCCAGCGGAAAAATACAGCAACACAGAAATCTAAACAGGTGCAATTCAAACTTTCTTCGGAGCTGCTGGCCAAGTAGAAGTTGTCACTATGTTGCACGCGTCACAGTCTGCATGTTGATGTAGAACGTCCCTTGTTGCGCAACATCTTCAACGCGCGCCTTccatcccatcagctttctaaaGTTCCGCCCTCTGGAAAGACAGGTGGAAATATGAGCAAGGCCAGATCCAGCAGGGTGACCCGTAGCTCCACCCCCCAGGCCTGGCACACAGAGCCGCCCCAGGACTCTGGGCCTGGCCCACATGGGACCCAGCAGAGGAAGCAGACAGACTCAGCCCTACCCCTGGCCCAGGACCTCAGTCAAATGAGTGTGAGTGGACAGGACACCTCACTACCACGGAAAGGGAGGGTGTCTAAGGGCAGCAGTGGCCCCATCCAGGGGGGTCCGTCGTCCTCTGGCTCTAAGCCTACACAGAGCTCCCCCTCTGGGCCGGCAATGAATCCCTCTCCCCGGGGAGGCCTGGCTGCTGTGGCTCGACTGGTGAAACTGGGGCGCTGTAAGAACGTGGTGGTAGTGGCCGGTGCAGGCATCAGTACGGCCAGCGGTATCCCAGACTTTAGGACCCCGGGCACAGGGCTGTATGCCAACTTGGCCAAGTACAACATCCCCTACCCGGAGGCCATCTTCAACATCGAGTACTTCTCCAATGACCCTCGGCCCTTCTTCTCCCTGGCCAAGGAGTTGTACCCAGGCAGTCACCGACCCAACTACATCCACTACTTCATCCACATGCTGCACCTCAAGGGCCTGCTGCTCCGCATGTACACCCAGAACATTGACGGCCTGGAGAAGATAAGTGGCATCCCAGACGAGAAGCTGGTGGAGGCTCATGGAAGTTTTGCGACTGCTTCCTGTCACCTGTGCTACACCCCATTCCCTGCCCAGGAGGCCAAGAGTGCCATAATGAGTGACAAGGTCCCGGTCTGTACATTCTGCCAGGCCACGGTCAAACCGGACATAGTGTTCTTTGGAGAGGACCTTCCTGAGAAGTACTTCCTGCATTCTAAAGACTTCCCTAAAGCTGACCTGCTCATCATCATGGGCACGTCTTTACAGATCGAGCCCTTTGCCAGCCTGGTGAACACAGTGAGGTCCACAGTTCCGCGGCTGCTCCTGAACCGGGACGCAGTGGGTCCCTTTCAGAAGGTGCCCCTGAGGAGGGGCGACTACATAGAGCTGGGGGACCTGGTGGACACGGTCAGGAGGTTTGGTGAATTCCTAGGGTGGCATTCCGAGATCCAAGACCTGATGACCAGTCAGGAAAATGGGACCATCCCTACTCTGGTAAGCAATGTTTCATCAGGAAGGGGCCGAGAAGGGCCCACCCAGACCAAAGCCACTGGCCTGGGGAGGAGAGGGGCATCAGAGCCCCGAGGAAGGTTGCCCCCTAAATCCAGGCCAGGGGCCCGTGGCCCCACCAACGGCAGCAGTGAGAGCGACTCCGAGTCAGACAGCAAGAGCATAGTTTCATCCAGCCCAAGTCACTTGTACACCCGTCTATGCAGTACCCCTCTGGGATTCAACACTTCACATTTTGAATTAAAGACCATTGAGCACTTGTATTTTCAGGACAAAAGATGAAATTatccttttttaaatgttttgactTATGAATGGACTAGTAGGGCAGTTTCCTTTTTTCATCATCCTCATGAAAGGTTCAGAAGTTAACGCCAGGATAAGGGTTGTCCTTAATTCATGTGGTTTTAACTGTATACTTCATGTATTCCTTTTGGTTAGATTTATTTTGGACAGGACTGTATTGTTATTAATTGtacaaaaatacatatttaataaATTAAACTTAGCCTTTTG

Function

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11121 SIR2; NAD+-dependent protein deacetylase SIR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219134 lncRNA upstream 23190 82954831 ~ 82955057 (+) True G193474
TU219050 lncRNA upstream 151485 82805777 ~ 82826762 (+) False LOC110497777
TU219053 lncRNA upstream 151968 82805777 ~ 82826279 (+) True LOC110497777
TU219051 lncRNA upstream 152271 82805777 ~ 82825976 (+) False LOC110497777
TU219047 lncRNA upstream 152313 82805777 ~ 82825934 (+) False LOC110497777
TU219176 lncRNA downstream 18927 83021796 ~ 83022094 (+) True G193513
TU219562 lncRNA downstream 89207 83092076 ~ 83092412 (+) True G193857
TU219560 lncRNA downstream 93695 83096564 ~ 83099389 (+) True G193855
TU219558 lncRNA downstream 102063 83104932 ~ 83105834 (+) True G193853
TU219587 lncRNA downstream 125254 83128123 ~ 83128591 (+) True G193880
XM_021574182.2 mRNA upstream 4472 82964528 ~ 82973775 (+) True LOC110497803
XM_036956812.1 mRNA upstream 24136 82893769 ~ 82954111 (+) False ppfibp1b
XM_021574253.2 mRNA downstream 113219 83116088 ~ 83118600 (+) True LOC110497829
XM_021574264.2 mRNA downstream 116352 83119221 ~ 83123796 (+) False LOC110497837
XM_036934286.1 mRNA downstream 200493 83203362 ~ 83204801 (+) True LOC110502176
XM_021574284.2 mRNA downstream 211360 83214229 ~ 83216248 (+) True LOC110497849
XM_036957002.1 mRNA downstream 238400 83241269 ~ 83344652 (+) False LOC110497874
TU218970 other upstream 323817 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 556065 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 574412 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 589726 82366285 ~ 82388521 (+) True LOC110497665
TU216655 other upstream 1892067 81083828 ~ 81086180 (+) True LOC110497320
TU219583 other downstream 116458 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 556051 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1593541 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2007595 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3132747 86135616 ~ 86136608 (+) True G197069

Expression Profile