RNA id: XM_036957002.1


Basic Information

Item Value
RNA id XM_036957002.1
length 4777
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110497874
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83241269 ~ 83344652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGATCTTACTGCGTAAAACACAGACCACTGTAGCTGCTCTATGTGCTATGATGGAAACACTTCGAAGTTTTAGTTCGGATTGAGAAATATCAACTTGATTCGTTTCCACTGAAGGCAACGGGATAAAATATTGACACGTCAAAATACATCGCAGTCGGGCTTTAATTGCGTTCATTTAATTGCATTGGGCGACGTTGTGAGACATTTTGAGCCATTCATTCCAAAGTCCTCTTTACAGTATGAGGTGCAGTTATGGCAAGCAGTAGTAAGAAGTCAGTGGCGAGGACCCTGGAGGATCTGACGCTTGATTCTGGTTATGGTGGAGCAGCAGACTCCTTTAGGTCTTCCAGTGCTTCACTGTGCTGTTCCGAGGCACATATACCTTATGCGCATGGGGGGAATGTTTGGCATTTAACCGACTCCATGCACAGTCGCCACAACAGCCTGGACACGGTCAACACAGTCTTGGTCGAAGACTCCGATATCCTGGATTGCTCCGGACAGTGCGCTAAACTACCCGAGCTCGAGGACGTGCCATGGAGCCTCGGGGAAGTAGAGAGCGCACTGAACAAGGACGAAGAGTTGAGGCTGGGGGTCGTGTCACAGGAGATCCTGGCTAGGCTCTCGGTCCTCATAAGCCGCGCACTCGTGAGGGTCGCCAAGGAAGCGCAGCGCCTGAGTTTGCGCTATGCCAAATGCACCAAATACGAGATTCAAAGTGCCATAAAGGTTGTCATGTCTTGGACAGTCTCGGTGAACTGCATCACCGCCGCACTCAGTGCCTTGTCTATGTACAACATGAGCACCGAGGACAAGTTCAGCCGCGGAAAGTCACTCAGATGCGGACTCATTTTCAACGTGGGGAAGTTCTTCAGGTGGATGGTGGACAGCCGAGTTGCGGTGAGGATCCACGAGCACGCTGCCATCTACCTGACAGCTTGCATGGAGAGTCTTTTCCGAGAGGTGTACGCACGCGCACTGCGCAGCGCACTTGTGGAGAAAGATAATGGGATCCCTAAATTCACTGTTGAGTCCCTCGAACAGGCCATCAACAACGATTCGGAGTTATGGGGGTTCCTGCAGCAGTATCAATACCTCATTTGTGGGAAGAATGCAAGTGGTGTGCTCAGCCTACCAGAGAGCCTGACTCTGCATCGGGACCAGCAGCGGTCAGGGAAAAGTGGGGAGGGCCACTCCTACAGTCAGTCGGAGCTGCGCTCCATCGAGCAGTGCCTGCTAGCCACACGGGTGGGCAGCATCTCAGAACTCAGTGACCTGGTCTCCCGGGCCATGCACCACCTCCAGCCGCTGCATGTGAAGAACCATAGCAACGGGACGCCCATCCACCAGAAGAGCAGCCCAGTACACTGGGAGCCTGAGGCGCTCTACACTCTCTGCTACTTCATGCACTGTCCCCAGGTGGAATGGGAGAACCCCAACGTAGAACCCTCTAAGGTTACCCTGCAGACAGAGAGGCCGTTCCTGGTTCTACCTCCTCTGATGGAGTGGCTCAGGGTGTCGGTGGCCCACGCAGAGCACCGCCGTAGCTTCTCAGTGGACAGTGACGACGTCCGGCAGGCCGCCAGGCTGCTGCTGCCAGGGGTGGACTGTGAACCACGCCAGCTCAAGACAGATGACTTCTGTGCATCCAGGAAGTTGGATGCAGCATCCACAGAGGCTAAGTTCCTCCAGGACCTGGGATTCCGTATGCTCAACTGTGGCCGGACCGACCTGGTCAAGCAGGCTGTCAATTTGCTGGGGCCTGACGGCATCAACAGCATGAGTGAACAGGGAATGACCCCTCTGATGTACTCCTGTGTGAGAGGGGATGAAGCAATGGTCCAGATGCTGCTGGACGCTGGAGCCGACATCAACAGTGAGGTGCCAAACACAGTGCACAAGTACCCCTCAGTCAACCCCGAAACGCGCCTGGGGACACCACTCACTTTCGCCGTGTTACACGGACATGTCCCTGTCGTGCAGCTGCTCCTGGATGCCCGGGCCAACGTAGAGGGCTCCCTACAGGACGGTATGGAGAACTACACAGAGACCCCGCTACAGCTTGCCTCCGCTGCAGGTAACTTTGAGCTGGTCAGTTTGCTgttggagagaggagcagaccccATGGTGGGAACCGTGTATCGTAACGGTATCTCTACTGCCCCTCATGGAGACATGAACTCCTACAGTCTAGCTGCAGCACATGGACACAGGAATGTGTTCCGCAAGCTGCTGTCCCAGAcggagaaggggaaaggggacGTGCTGTCCCTGGAGGAGATCCTTgctgaggggacagaggaagaaAGGGGCCTGGAGGAGAGGAACCCCTCCCAGCTGGACCTGGTCCGGACCGGCAAGGCCAAGCTCAAGGCCCTGAGAGAGGCCATGTACCACAGCTCTGAACACGGACATGTGGATATCACCATCGACATACGCAGCCTAGgGGTCCCCTGGACGCTGCACACCTGGCTGGAGTCTCTGCGGACGTGTTTCCTGCAGCATCGGAGACCACTGATCCAGGGCCTGCTCAAGGAGTTCAGCTgtattgaggaggaggagtacACACAGGAGCTCATCACCCACGGCCTGCCACTCTTGTTTCAGATCCTACGAGCCAGCAAGAATGAGGTGATCAGCCAGCAGCTGTCTCTGATCTTCACCCAGTGCTACGGACCGTACCCCATCCCCAAACTCCCTGAGATAAAGAGGAAACAGACCTCACGCCTGGATCCTCATTTCCTAAACAACAAGGAGATGTCAGATGTGACCTTCTTGGTGGAGGGGAAGCCATTCTACGCCCACAAAGTCCTGCTCTTCACCGCCTCTGGCAGGTTTAAGTCTCTACTGGCGAACAGACCAGCTGCTGAAAACACATGTATTGAAATCAGCCACGTCAAATACAACATATTCCTGCTGGTGATGCAATACCTCTACTGTGGTGGGACGGAGCATCTGCACATCAGAAACACAGAGGTTATGGAGCTGCTGTCAGCGGCCAAGTTCTTCCAGCTGGAGGCGCTGCAGAGGCACTGTGAGATCATCTGCTCTAAGAACATCAACACAGAAACCTGTGTGGAGATCTACAGCCACACCAAGTTCCTGGATGTCCCAGATTTGGCTGTCTACATCGAGGGCTACTTCCTGAAAAACATGGTGGTGCTGATTGAGCTGGAGCCCTTCAAAACACTGTTGTACGACACGCCTCCAGACAGTCCCGCCACCGATGTACTCCTGGACCTGGAGAAGACCCTGGGCATCCGCATCCAGTCCATCCACCTGTCCTCCTCCAAGGGCTCCATTGTCTGATTGGTTGATTTATTGAGCTGCTAATGGGActggaactgtctgtctgtcaccattGACCCCAGTTCAACACATAGCTGTACTGAACCACACTCAACAGTGACACTTTTAAATTGCTTGCTGTGCTAACACGCTATTGCCATTCTCCTGCAGCCTACTGAGCTTTGGGCCGAGCACTTAGGCAAATGGACAGCGCTGGAACCCCAGAAATTGTGAAAAGGAGATTTTCATAGGGCTGAAGTAAAGCTGACTCATCACAGCAATAGTGGGACTATATCGCTGAGATGCAgtgaggaatgtgtgtgtgtgtgtgtgtgtgtctggaatcATTCGTAAAGCCCCGGCCAACATTACTTCGCTCCTTGACATTAGTCTCCAGACTGCAGTCAGACCTGCCATTACTCCACGTGTCTACTGGGCAGAATCATTGTTGGTACTTTTCTCAGCATGGTTCTGCAATCCTACATAGCTTTATAGTCTATTTATAACTGGGCCTAGCCAAACTTAACATAAGAGCAGACCTGAGTTCAATATTATTTGAAATAAAATACTTTTAGCATTTGCTCTAGTCTGCCCGGGGTGTCAGATTGGTGCAGTTTGCACTTTtgtgactattctattggttccattgtgccaggcaagctcaatcacgCCTAGATAAAGTATTTaacatgatttcaaatagtatttgaaccctggTCTACTACATGTAAGAGTGATATGtggatatactgtatgtcatgtGGTAGTATGTTTTAAGGGAGTCATGCAAAGGAGAGAGGTATTGGGAAATTCTTCAAGCTACGTTTGGGAAAGCAGAAAACACATTTCCTTCCTTCATCCGCTGTTAGAACTGTGTAAATATTGTGAATAAAACACAGAGCTTTGGCTCCTCTTGTAAGTTAATGTATATATCCTACAGATGTTTCTTCTTCTCATGCGTCTACTCATTGGATATGGCTTTATAAAATGTTGTTCTTTTCAATGTGTTATCGTTCTGTATGTTTCAAGTTGCATGTCATGAGAATGACTGTTTTGCTTGTGTTCAGTTTGGTTTAAGAGTGGCATGAGACTTTAAGAGAGGAAGCAGGAACGGTATTGAGGAGCGATATTGTCAGCATGTGTCTCTAAATGTGTAGACGTGTACTGGTGTCTTCATTTCAGGAGTGAACGGTTATGGGCCTGTATTCAAAAAGCGTCTCTGagtgggagtgctgatctagaatcaggtccccCTGTCTATAATcacattcattatgatctaaaaggataAAACTGATCCAGCACGCCTACACTGAGACACTTTATGGATAGAGGCCTAGTTCAAAAGATGATCAGGGTCTATCCTAAACCGGAGAAGCGTCATCTGTTGTGTTTTCCAGACATTGTGAAACTACATGTAAATGTGTGACTTAATATCCGTTTCCTCCATAAAGATTAATATAAAGAATGATATGAATCCTCCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219664 lncRNA upstream 23723 83217122 ~ 83217546 (+) True G193954
TU219637 lncRNA upstream 53846 83187193 ~ 83187423 (+) True G193930
TU219630 lncRNA upstream 60920 83180018 ~ 83180349 (+) True G193923
TU219623 lncRNA upstream 73962 83167098 ~ 83167307 (+) True G193916
TU219619 lncRNA upstream 76401 83164540 ~ 83164868 (+) True G193912
TU219981 lncRNA downstream 5265 83349917 ~ 83357420 (+) True G194224
TU219986 lncRNA downstream 21379 83366031 ~ 83368104 (+) False G194228
TU219987 lncRNA downstream 23097 83367749 ~ 83368104 (+) True G194228
TU220006 lncRNA downstream 51130 83395782 ~ 83397649 (+) True G194241
TU220012 lncRNA downstream 64284 83408936 ~ 83410202 (+) False LOC110497890
XM_021574284.2 mRNA upstream 25021 83214229 ~ 83216248 (+) True LOC110497849
XM_036934286.1 mRNA upstream 36468 83203362 ~ 83204801 (+) True LOC110502176
XM_021574264.2 mRNA upstream 117473 83119221 ~ 83123796 (+) False LOC110497837
XM_021574253.2 mRNA upstream 122669 83116088 ~ 83118600 (+) True LOC110497829
XM_021574195.2 mRNA upstream 238400 82978247 ~ 83002869 (+) True si:dkey-103i16.6
XM_036957040.1 mRNA downstream 32995 83377647 ~ 83395033 (+) False LOC110502210
XM_036957023.1 mRNA downstream 33010 83377662 ~ 83395033 (+) False LOC110502210
XM_036957032.1 mRNA downstream 33225 83377877 ~ 83395033 (+) False LOC110502210
XM_036957047.1 mRNA downstream 38802 83383454 ~ 83395033 (+) True LOC110502210
XM_021574333.2 mRNA downstream 56307 83400959 ~ 83408768 (+) True LOC110497881
TU219583 other upstream 116304 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 586839 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 819087 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 837434 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 852748 82366285 ~ 82388521 (+) True LOC110497665
TU220190 other downstream 214268 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1251758 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1665812 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2790964 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3692859 87037511 ~ 87039236 (+) True G198417

Expression Profile