RNA id: XM_021574349.2


Basic Information

Item Value
RNA id XM_021574349.2
length 2984
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC110497890
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83408936 ~ 83422350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacccttgaatgagaaggtgttctaaaacattttaccggtagtgtatatatgtcACAGCAGCCATAATACTGACCACTTAGTGCTTCATTGCACAAATAGAACACCACAACATTGTTGTAGGTCATGATAACATTCTATCTATTGCCTACATTTTCCAGGAAGCTTCAAAACTTTTGTGGAATTTGCTTTTGTGGCTTGTTCCTTGGTCACTTGAATTTCTTTAACTTTTGATATGTTATGGCTCAAAGTTTAGCTGTTCATAATATTGAAAAAACCATTCCattaaaattatatttttggaaGTTGGAAGGTTTTACTCTGAGGTAAAAAGGAAAACTGTGTGCACTAATCAGAGCTCAAGTCTGTTAATATTGATCAGTTGGAGCTTTTCTCTCAAAAGAAAGGAAAAAACGTTGATTATAATAGAACAGACTATCCTAAAGTTATAATCCCTCACAAAAGCCAATGAGATTCTTACATTATCGTTTTTATTTCTTTGTTATTAAAGTAGATATGATATTCAATATATTTTCTTCTGAGAGCTTCCTCTATATGTGAATTGTAGTCAGTAAACTTCAACAAAAATCTATATTGGCTGTTGACACTTTATGCACACCCATGCATAGGCCTACATATGCACAACAGTATAGTCTACATTGATTTATATTCCAGCTTGTCTCTTCATGTCTAGGTTATGTAACATTGCATGTGAAGTATTGATGTTGCTCATGTTAGACAGTAAATACTAGAGCCTGCCACACCtaccataaaatatattttctttgttTCTTTGCAGAAATGTTCAGAAAAAAGCCGAAGCAATTTTATTGAACTATTTCAAGATATGCTGTTTCTTTCTCCCAAACATGTTGGACAAGTTTGTGCAGTGTATCCTGGTATTGTGTATATTATGTCTGTTCCTCAGGCCTACACACaacttttcaagtctctccaaCCAACCTTGGCACTGTGGGAGGAATGTCTGTACCCTTGTGGACTCCTCAATGCACATGTCCCAGCAAGCCCTGAATACACTacactgtaggctacacctcaACATGGCCAATGCAGAAAGACATATAAAGGAGCAGCAACATCAAACAGGCCTGTAAAGATTTAACTTACACACAGTCATACTTGTATTCTGTCCTGGGTTTGACTTGTATACAATTGATATTCTGATCTTCCAGGTTATAAAGTTATCTAATAATAGGGTGCTTTCTTGAATCTATATTCTACTCTGCAGACATGTGAAAATGACAAACTTGTCACCGTTTATTTGTCCAAACAAAACTCATACAACATTAATCAGCAGTTATATATATTGTGCACACAGCAGTGGATGTGTTGTCACACCACGCTTCATAAGACGCGGGAGTGGCTGTGCTCTGGTTGACCACTGCAGGCGGCGCCTAGTTGCGCGTTACGAGAATTTCAAGAACTCATAGGTAGGTCAATGGGTGTGTAAACGAAACTGGGAAATCACCTCTTGGGACACATCGTGAATTTGTTAAAAAGTGGTCAAATAAGATGTCGAGCCGGACCAGACCTGGCTACTGTCGCCAGGACGTGAACAAAACCACCTGGGAGGTACCGGAGCAGTACCGGGAGCTGAAACAGGTGGGGACGGGGGCTTACGGTACAGTCTGCTCTGCGGTGGACTTCAGGACAGGGACCAAGGTGGCCATTAAGAAGCTCCACAGGCCCTTCCAGTCTGAGCTCTTTGCTAAGAGGGCCTATCGGGAGCTGAGGCTGCTCAAACACATGAAACATGAAAATGTTATTGGCCTTGTCTATGTATTCACTGCAGACCTCTCCTTGGACAGATTCCATGACTTctaTCTGGTGATGCCCTTCAtgggaacagatctggggaagttgATGAAGTTACAGAATCTCTCGGAGGACAAAGTACAGTTCCTGGTGTATCAGATGCTGAAGGGACTCAAGTATATCCATTCTGCTGGCATCATTCATAGGGACCTCAAACCTGGGAATCTGGCTGTTAACCAGGAATGTGAGCTCAAgATCCTGGACTTTGGGTTGGCGCGGCAGGCTGACAGTGAGATGACTGGCTACGTAGTGACTCGCTGGTACAGAGCCCCAGAGGTCATCCTCAGCTGGATGCACTACACCCAGACTGTGGACATCTGGTCAGTGGGCTGCATCATGGCAGAGATGCTGTCGGGAAAAACACTGTTCAAAGGCAATGACCACCTGGATCAGCTGACTGAGATCATGAAAATCACCGGGACGCCCACTCAGGACTTCATCACCAAACTGCAGTCTCAGGATGCAAAAAACTATGTCAAAAGCCTTCCCAAAGTGCAAAAGAAAGACCTTCAGGAACTCTTTTCCAAAGTCAACCCACAGGGTCACACGTTCACAGAGATCTTGTCTTTCCAGCCCCAAGTGGTTGAGTCCAGGGAAACCGCACTGTAAGGTGAAGCGTCATGGTAACCAACCCCCACCCACCATTTGTTTTTACAAGTGTCCTCCTCTGTTAATCCAACATTCTCAGACTGTAATGTTTGTATGGGTTTACTCCTCACGTGTGTATATTTTCAGCTATTTTCATACCACTCTTGTTGGCTCCTGGATCAAGCGCTTGTCAAGACAACGATTTTTGTCATTTAGGATAAGACGTTGTTTGTCCTTTGACTAGAATTCTAGGACGTTTccgtgtgtgtgtagctgtgtagtCTAAACATGTCTGTGACCCCTACTGATGTTTCCTTAATATTGTCATTTCCTTTTATCACCTTAATGAACAATGGTACAGGTCCAAACATCTGAAACCATTTACTAAAGTGTGAGCACAGCAGCAGTTATTTGATGACACAGTTTGCAGACACATAAAAACCATTGGTGGTCTGCAAAACGTTGCACATTTTttaaacttaaaaaaaaatatataagccATTTACTGTAATTTTGCTTACAttggatatttatttttttattaaaacacCATTGTTTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220012 lncRNA upstream 11 83408936 ~ 83410202 (+) False LOC110497890
TU220006 lncRNA upstream 12564 83395782 ~ 83397649 (+) True G194241
TU219986 lncRNA upstream 42109 83366031 ~ 83368104 (+) False G194228
TU219987 lncRNA upstream 42109 83367749 ~ 83368104 (+) True G194228
TU219981 lncRNA upstream 52793 83349917 ~ 83357420 (+) True G194224
TU220043 lncRNA downstream 7318 83429668 ~ 83429868 (+) True G194263
TU220046 lncRNA downstream 9556 83431906 ~ 83432137 (+) True G194266
TU220047 lncRNA downstream 9847 83432197 ~ 83432434 (+) True G194267
TU220161 lncRNA downstream 76091 83498441 ~ 83498677 (+) True G194366
TU220163 lncRNA downstream 77479 83499829 ~ 83500238 (+) True G194368
XM_021574333.2 mRNA upstream 1445 83400959 ~ 83408768 (+) True LOC110497881
XM_036957040.1 mRNA upstream 15180 83377647 ~ 83395033 (+) False LOC110502210
XM_036957023.1 mRNA upstream 15180 83377662 ~ 83395033 (+) False LOC110502210
XM_036957032.1 mRNA upstream 15180 83377877 ~ 83395033 (+) False LOC110502210
XM_036957047.1 mRNA upstream 15180 83383454 ~ 83395033 (+) True LOC110502210
XM_021574361.2 mRNA downstream 10868 83433218 ~ 83471783 (+) False LOC110497903
XM_021574370.2 mRNA downstream 10868 83433218 ~ 83471783 (+) False LOC110497903
XM_021574379.2 mRNA downstream 10868 83433218 ~ 83471783 (+) False LOC110497903
XM_021574386.2 mRNA downstream 10868 83433218 ~ 83471783 (+) False LOC110497903
XM_021574395.2 mRNA downstream 10868 83433218 ~ 83471783 (+) False LOC110497903
TU219583 other upstream 285248 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 755783 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 988031 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1006378 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 1021692 82366285 ~ 82388521 (+) True LOC110497665
TU220190 other downstream 136570 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1174060 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1588114 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2713266 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3615161 87037511 ~ 87039236 (+) True G198417

Expression Profile