RNA id: XM_021574443.2


Basic Information

Item Value
RNA id XM_021574443.2
length 1150
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110497954
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83809205 ~ 83812698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACTTTTTGGAATTAATCTACGTGAAGCATCTTTTTATTACGAAATAAGTCACCTATTTTATATTTTGATAATTAATGCGACTATTGAGGCATAATGGTAGCTAAATACTAAATAAATTGCTAACAGTATCCTAAAATATACGTCAGGATTTTACGCAGGCCGATCGACCTGCCAATAAATGGAGGAACTCACGGGTCTTTTCAAAGGTCGGTGTGTCCCTCAACCGAGTTAAATTACTGGTTCGGATAAAGATGCTGTCCTTAGCCGCTCGTTCTGGGGCTTTGTTCCCGTACTTGCAGGCGACCAATGTAGCTGTGAATGGATCCCTCAAAGCACTGCTCCCTGGAGCGGTGAAGGGAGATTCACTGCTGAAATCCAGCTCACAGAAGACGCCCGCTATTTCAGCTTGCGTTAGTGCCCCTGGTGGAATTCGCATGGCCCACACAGACATCAAGGTCCCAGACTTCTCTGACTACCGTCGTCCTGAGTTGCTGGACCCCAAGAAGTCCTCCCAGGAGAGCAGCGAGTCCAGGAAGACCTTCTCCTACCTGGTCACTGGGGCCACAGCTGTGGTGGGCGTCTACACAGCCAAGACGGTGGCCACCCAGTTCATCTCCTCTATGAGCGCCTCAGCCGACGTGCTGGCCATGTCCAAGATTGAGGTGAAGCTGGGAGAGATCCCAGAGGGCAAGAACATGACCTTCAAGTGGAGGGGCAAGCCTCTCTTCATCCGCCACCGAACTGAGAAGGAGATCGCCACCGAGGAAGCTGTGGATATGGCCATGCTACGTGACCCCCAACACGACAAGGACCGCGTAGCCAACCCGAAGTGGATCATCGTGATCGGTGTCTGCACCCACCTGGGCTGTGTGCCCATCGCCAATGCCGGAGACTACGGAGGATACTACTGTCCCTGCCACGGCTCCCACTACGACGCCTCGGGGAGAATTCGGAAGGGACCCGCACCTCTCAACCTAGAGGTGCCCTATTACGAATTCCCAGACGACGACACCGTTGTTGTGGGATAATGTTTGCGCTCCATTACTTCCCTCGCTagtatatttatttgttttttcaAATGGTTAAATCTGAGAACTTAGGTTAAAGAAAGGTTACTAATAAAGGGGCATTTTAAAATAACCTGAAA

Function

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221237 lncRNA downstream 843 83807593 ~ 83808362 (-) True G195375
TU221240 lncRNA downstream 3796 83805099 ~ 83805409 (-) True G195378
TU221239 lncRNA downstream 4193 83804810 ~ 83805012 (-) True G195377
TU220497 lncRNA downstream 42336 83766655 ~ 83766869 (-) True G194690
TU220491 lncRNA downstream 51046 83757917 ~ 83758159 (-) True G194684
TU221308 lncRNA upstream 101665 83914363 ~ 83915156 (-) True G195445
TU221313 lncRNA upstream 112680 83925378 ~ 83926069 (-) True G195450
TU221321 lncRNA upstream 127288 83939986 ~ 83940416 (-) True G195458
TU221325 lncRNA upstream 132575 83945273 ~ 83945489 (-) True G195462
TU221341 lncRNA upstream 151438 83964136 ~ 83965047 (-) True G195476
XR_005038542.1 mRNA downstream 8608 83798504 ~ 83800597 (-) True LOC118942895
XM_021574433.2 mRNA downstream 17380 83779372 ~ 83791825 (-) True LOC110497945
XM_021574419.2 mRNA downstream 31869 83735711 ~ 83777336 (-) True LOC110497937
XR_005039459.1 mRNA downstream 59534 83749617 ~ 83749671 (-) True LOC118944150
XM_036956986.1 mRNA downstream 570089 83224373 ~ 83239116 (-) False LOC110497857
XM_021574506.2 mRNA upstream 218018 84030716 ~ 84169587 (-) False tbxas1
XM_021574487.2 mRNA upstream 218018 84030716 ~ 84175730 (-) False tbxas1
XM_021574496.2 mRNA upstream 218018 84030716 ~ 84175738 (-) True tbxas1
XM_021580083.1 mRNA upstream 743768 84556466 ~ 84585407 (-) True LOC110502226
XM_021574564.2 mRNA upstream 784235 84596933 ~ 84733387 (-) False LOC110498022
TU220290 other downstream 193171 83615566 ~ 83616034 (-) True G194491
TU219891 other downstream 586061 83220022 ~ 83223144 (-) True LOC110502187
TU219446 other downstream 801229 83005830 ~ 83007976 (-) True G193755
TU219436 other downstream 896701 82901640 ~ 82912504 (-) True G193745
TU217319 other downstream 2615360 81192528 ~ 81193845 (-) True cart2
TU221290 other upstream 68842 83881540 ~ 83904451 (-) True G195427
TU221355 other upstream 165267 83977965 ~ 83982167 (-) True G195486
TU221798 other upstream 797036 84609734 ~ 84639756 (-) True LOC110498022
TU223542 other upstream 2023601 85836299 ~ 85843493 (-) False G197498
TU223547 other upstream 2023601 85836299 ~ 85843493 (-) False G197498

Expression Profile