RNA id: LOC110497962


Basic Information

Item Value
RNA id LOC110497962
length 1343
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110497962
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83814200 ~ 83818689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaagagtgtgcaaagctgtcaaggcaaggagtggctactttgaagaacctcaaatGTGATGGTGTTGTGGCTCCATACAATGGGGATGAGGAGTGGAACCCTTGGGAGGCTGAGCAGGCTGATGATATCTCTGCTCTTCTCAATTGGAGGGAGGCTTTCAGACAATATACCAGGAGCTCATTGACAAGAACAGGCCCAAGAGATACAAAGTTCAAATCAGGGGGAAAGCTGCCATAGtttctacacaGGCCCAGCGGTGATCCAGGGCCACGTTCCTTtggacacagacagtgtggttcTGGTGCTGAATGGCCAGGAGCAACAGAAGATCCCCTGCGCTACCCGGTGGTTGCAGCACATCCAGACCCTCATGTGGGTTGATGCTGTAAACTGTTTAGCTGTGGTACTGCTAGGCAGCAAGCGCTGCACAAAGGACTGGATCAACATCTACCTGAGGAGGCATGGGGTCTTCGTGGACCTGCTCTTCCTGGTCTATGGAAGCCCCTGGGTCAATGACAAGGATGTCTTCCAGTGGCCCGTTGGAGTAGCCACGTGGCTTCCTCAGGAGACAGCAAAGAGTCTGAGACGGTACCAGACAGCCCTGGCCCAAAGCGAGCTCACCCTCTGCTCCGTGGAAATCTACATGGAGTGCTACCGCATCTACGAGGCTGTGCCTATGGTTCGGTGCCCGTGGTGGAGGACATTGTGACTCCAGGTGGGTGCTCTGCTGCACACAGCTCCCCACTGCGTCTCCTCAAAGCTGCAGGAGCCCTCTTCATCTTTCTCAAGGACTGTAAGGAGCTGCCAGGCCtcctggagaaggagaaggggatgagccaggaggagaggactgagaggaggaggagactgctGGAGTGGTATAGCAGTTTCCACCTGCAGATGAAGGACAGGTTCACCGAGGTCTTAGAGGTCAACCGCAATGCTCTCCGGAGGGTgatgcggtctgcacaacgcatcaccaggggcaaactacctgccgtccaggacacctacagcacccgatgtcaggggaaggccaaaaagatcatcaaggacaacaaccacccgagccactgcctgttcacccagctaccatccagaaggtgaggtcatttcaggtgtatcaaagctgggagcatgagactgaaaaacagcttctgtctcaaggccatcagactgctaaacagcaatcattaTCTCATAGTGGCTGCTGCCTACAGAgactcactagtcactttaaacaatggcactttaataatgtttacatatcttacattactcatctcatatgtatatactgtatcttataccatctattgcatcttgcctatgccgcttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220411 lncRNA upstream 41130 83772822 ~ 83773070 (+) True G194611
TU220410 lncRNA upstream 42014 83771971 ~ 83772186 (+) True G194610
TU220403 lncRNA upstream 49433 83764473 ~ 83764767 (+) True G194603
TU220395 lncRNA upstream 63358 83750537 ~ 83750842 (+) True G194595
TU220394 lncRNA upstream 63943 83750016 ~ 83750257 (+) True G194594
TU220587 lncRNA downstream 100681 83919370 ~ 83925243 (+) True G194777
TU220603 lncRNA downstream 129382 83948071 ~ 83949452 (+) False G194788
TU220604 lncRNA downstream 130407 83949096 ~ 83949452 (+) True G194788
TU220620 lncRNA downstream 212040 84030729 ~ 84032440 (+) True G194804
TU220622 lncRNA downstream 259599 84078288 ~ 84142920 (+) True G194806
XM_021574407.2 mRNA upstream 131791 83661951 ~ 83682409 (+) True LOC110497928
XM_036934304.1 mRNA upstream 202904 83498149 ~ 83611296 (+) True LOC110502224
XM_021574379.2 mRNA upstream 342417 83433218 ~ 83471783 (+) False LOC110497903
XM_036957193.1 mRNA downstream 4894 83823583 ~ 83978085 (+) False LOC110497968
XM_036957189.1 mRNA downstream 4894 83823583 ~ 83979825 (+) False LOC110497968
XM_036957190.1 mRNA downstream 4894 83823583 ~ 83979825 (+) False LOC110497968
XM_036957191.1 mRNA downstream 4895 83823584 ~ 83979825 (+) False LOC110497968
XM_036957192.1 mRNA downstream 4895 83823584 ~ 83979825 (+) True LOC110497968
TU220190 other upstream 254602 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 689235 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 1159770 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 1392018 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1410365 82401113 ~ 82403835 (+) True G193170
TU220995 other downstream 777721 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1191775 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2316927 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3218822 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 3331513 87150202 ~ 87150490 (+) True G198575

Expression Profile