RNA id: XM_036957189.1


Basic Information

Item Value
RNA id XM_036957189.1
length 5332
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110497968
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83823583 ~ 83979825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGTCTGTTTTGTCTGGGAAAACGAAGCAAATGGGAAGTGTGGGACCGGGGAAACTAGAGAGCACCAAAAGAACGATATATATAAGACACGTGACGTACAGTTGCCGTGTACTACCTTGGTGCGGCGTGCAATAAAACCGCGCGCCTCTCACCACATTGAACATTTCTATTTATCGGATTATTAAAGGTTATGCAGTTGCATCGACGCGACATCTCCACTCTGCCTGACATTGCCAGCAGTTATCAGTGATTTCATTGATTGATATCAGGATTTCGTGTTGGCCTCCTTTTCTAGGACTACTCGTGTATAAGGAGAACAATGGACTAAACCTTTTCTTGAATAGCTACTTTACAAGGGAATACATCTAATTTGAAAGTTGGCGCCGAGTTTTCGTGGCTACAAATTGTTGTTTGGTAGGGGAAAACTACTCAATCTGTGTGATGCTTCGGGTGTTATAGGCGTGCAGCAAGACGAGCCTTTTAATAGTTGAATTTCCTAACTACTCTGAATCGACCCGAACATGTCTAATACAAAGTTCAAAAAGGATAAAGAAATCATTGCTGATTACGAGAGTCAAGTTAAAGAGATCCGTGCCCAGCTGGTGGAGCAGCAGAAATGCCTGGACCAGCAGACAGAGATGAGGGTGCAGCTCCTCCAGGACCTGCAGGACTTCTTCAGGAAGAAGTCCGAGATTGAGATGGAGTACTCCAGGAACCTGGAGAAACTGGCAGAGAGGTTCATGGCTAAGACTCGGAGCACCAAGGACCACCAGCAGTACAAGAAGGACCAGAACCTGCTGTCCCCGGTTAACTGCTGGTACCTGTTGCTGAaccaggtgaggagggagagcaAGGACCACGCCACCCTCAGTGACATCTACCTGAACAACGTCATCATGCGCTTCATGCAGATCAGCGAGGACTCCACACGCCTGCTCAAGAAGaGTAAGGAGATAACGTTTCAGCTTCAGGAAGACTTGATGAAGGTCCTCAACGAGCTTTACACTGTGATGAAGACTTACCACATGTACCACACGGAGAGCATTAGTGCAGAGAGCAAGCTGAAGGAGGCGGAGAAGCAGGAGGAGAAGCAGATCGGCCGGGCCGAGCCCGTCTTCAGCTATCGCCTGGAAGACAAGCACCAGAGACGCAGCTCCGTCAAGAAGATTGAGAAGATGAAGGAAAAGCGCCAGGCCAAGTACTCGGAGAACAAGCTGAAGTCAATCAAAGCACGGAACGAGTACCTGCTGACACTGGAGGCGACAAATTCCTCCGTCTTCAAGTACTACATCCACGACTTGTCTGACTTAATTGACTGCTGTGATCTGGGCTACCACGCCAGCCTGAACCGTGCCCTGAGGACCTACCTATCGGCTGAGTACAACCTGGAGACAAGTCGCCACGAGGGCCTAGACATCATCGAGAACGCCGTGGACAGTCTGGACCCCCGCAGCGACCGCCAGCGCTTCATGGAGTTGTACCCCACAGCCTTCTGCCCGCCCATCAAGTTCCAGTTCCAGCCCCACATGGGCGATGAGGTGTGCCAGATCGCGATGCAGCCGCCGGTGAGCGGAGAGCTGATGTTGAGGTTCCAGCAACTACAGTCCCGCCTGGCCACTCTGAACATCGAGAACGAGGAGATCAAGAAGACGTCAGAGGCCACCCTGACGACCATCCAGGACATGGTGACCATCGAGGACTACGACGTATCCGAGTGTTTCCACCACAGCCGCTCCACCGAGTCGGTGAAGTCCACCGTGTCTGAGACCTACCTCAGCAAGCCCAGCATCGCCAAACGGAGGGCCAACCAGCAGGAGACAGAGCAATTCTACTTCATGAAATTCCGGGAGTTTCTGGAGGGCAGCAATCTCATCTCCAAACTGCAGGCCAAGCACGACCTACTGAAGAGGACTCTGGGAGAAGGTCACCAAGGGGACTATATGACCACAAGGCCTCCCAATGTGCCGCCCAAACCTCACAGTGGCACAAATAGGAGGGCTAGGCCCCGCTCGGTCTTTAACGTTAAGTTGTTTAATGGCAATCTGGAGTCCTTTGTCAAGGACTCTGGACAAGCTATTCCCCGTGTGGTGGAGAGCTGTGTTCGATTCATCAATCTCTATGGCCTTCAGCATCAAGGGATATTCCGTGTGTCCGGGTCTCAGATGGAAATCAATGACATCAAGAACTCATTCGAGAGAGGTAAGGACCCATTGACAGATGAAGAGAACAACCACGACATCAACTCGGTTGCCGGGGTTCTTAAACTCTACTTCCGGGGCCTGGAGAAATCCCTCTTGCCCAAGGAAAGATTTAATGACCTCCTCTCCTGCGTCAGAATAGAGAACCTGTATGAGCGGTCCCTTTACATCCGTAAGATTCTCCTGACCGCCGTGCCCAGATCCATCCTCATCGTGATGCGCTACCTTTTTGCCTTTCTCAATCACCTGTCCCAGTACAGCGATGAGAACATGATGGACCCCTATAACCTGGCCATCTGCTTCGGGCCCACCCTCATGCCCACACCCAACATCGAGGACCAGGTGTTGTGCCAGGCACACGTCAACGAGATCATCAAGACCATCATCATCCACCACGAAACCATCTTCCCCGACACCAAGGAGCTGGACGGGCCCGTCTATGAGAAATGCATGGCCGGGGAAGACTACTGTGAGAGTCCCTACAGTGAGCATGGGGCCATAGAGGAGGTGGACAATGAGGGAGGCACTGAGACGCATACCAGTGAGGATGAGGGCGAGCCCATCGAAGCAATTGCCAAGTTTGACTACGTGGGGCGTTCTGCCCGAGAGCTGTGCTTCAAGAAGGGTGCCTCCCTGCTGCTGTACCAGCGGGCATCGGACGACTGGTGGGAGGGACGGCACAACGGCATTGACGGCTTGGTACCTCACCAGTACATCGTGGTGCAGGACATggatGATAATTTCTCAGACACGCTTAGTCAGAAGGCTGACAGTGAGGCCAGCAGCGGCCATGGAGCTGAGGACAAGTGTTCAGGAAAAGACATTAGCTCTCCTACCGACACCAGGATCACTGACGCCTACATTGGCAGCAGGCATAAGAAGAGGACGGAGCCCCCCTCCCGCCGCCCCCCGGCGCGCCCCAATGATGTCAACTGCATGGTGCACCCCTCCCAGCAGACCCACGGTGGCCAGGCTCACACGCCTGAGATGGGCTCCCCAGTTCTGGGTCACTCCTTCAGCCCCCGGGACCTGCTGCGGGGCCGTAACCACGGCCAGCTTCCCATGGACAGCCCCGAGCACCGGCGCCGAACAGGCCACGGTAGCCTGACCAACATCAGCCGCCACGAGTCACTGAAGAAGATGGAGAGCCCGCCCATTCGACGCTCCACAAGCTCGGGCCAGTACACAGCCGTGTTCCAGGACCCCCACCCGCATGGTGGTGGCAAGCCCCTGGATCCGGAGACCATTGCACAGgACATAGAGGAGACGATGAACACGGCGCTGAACGAGCTGCGTGAGCTGGAGAGGCAGAGTTCGGCCAAGCACGCTCCCGATGTTGTGCTGGACACCCTGGAGCAGAGGCAGTCGACCGGGGGTCCCACCCCAGCCAGCTCCAGCGAGTCCCTCAGCCCCCTCCACAACATCCTTCTGAGGGCTCAGACCGGCGAGGCCGGGGGGCCCCCGATGCGCCGCAGCACCAGCTCTTCCAGCGACACCATGAGCACCTTCAAGCCGGTAGTGGTACCCCGTATGGGGGTGCAGCTTAAGCCGCCTGCCCTGAGGCCCAAGCCCCTGGTGCTGCCCAAGACGGGCCCGGCTCACCCTCCCCCTGTACACCCTCCCCAAGACCCCCTAGACAAGTCGTGCACCATGTGAACTTTGAACTCTGGGATGGGAACATGGACCAACAGGAAACTGGGAGAGGGTCTCTGACTACATATAGTAGCAATATGTTATCATTGTCTATAAATGATAATAATAGTAACAATATTGTATAAGACAGTATAAGAACAGTCCATTGCCTGGACATTGATGATTCTGTTGTAATTTGCTTTGTGAGAAAGATGTGTTTTCTTGTGTCGAAGTTAACCAGTGTCCAGTAAGTTAACCACATTTATTAACAATGAAAACAGGAACATTCTCAGGTCTGCTAGACAGACTGAACTACCACAAGGAAAGGAGCATGTTTCAGTGTGACTAACTATCCATGTGGAAAATACTGTAGAATCTGCTGAAATGCCTAGCATTGCTAGATAAGTCAACTTTTTCTTCTTGATCATTACTGTATACAGAACAACAATTCACAAGGCTTCCTTTGAGGTTAGAGAAACTTGACTGGTAGTTTACAAAAACTAGAGAACTACAAAAGAATGAACGCTAAAGAAACAAAATAGTGCACGTTGCAATTCTGTTTTGCTTACTACTCAGCCAGGGGAACTATGGGAAATGTAGTCCGTGTCAGTTGAACCTGACTAAGGTTTGCTTCTCACTTAGATGGACAATGCTTAGATTTAGAGTACCACTCAGAAATATAAGCTGTCAATAGTGAAATTTCAAACCACCATTTGAAAGCTGTTGGAAGTTTGGATGTAGCTAATGTTTATAGCTGAGACTGAAGCAGGGAGGGCAAGAGTCCAGATATGTGTGTGATCATAAGGATGCACTCTCACATACAGTTTTGGCCAAATATATTAGCACCCTtgcacttttcttaaataattccCTATTTCTTCTCAAATAAATTGCAATTGGAAAAAACCTTTGTTATTGAATTTTCAACATTGCagaacatattttatttttataaactTTATTTTCTAAATTAAATTTGTAAACTTAAGACAAATGGCCTGGGAAAAATGATTGGCACCCAGGAGCTAGTACTTGTGCAGTagggttgctttgctgcctctgGTACTGGGGCCTTGAATGTGTGCAAGACATCATGAATCATGAAATCAGCAGATTATCAAGGTATTTTGGAGTTCAATGTTCAACCCAGTGTCCAAAAATGGTGTCTTTCTTTAAGGTTgtgggtcttccagcaggacaacattTCAAAACACACGTCAAAAGCACCCTGAAATGGTTCAAGAAGAATCGCTGAACTGTTCTGGAGTGGCCAGCGAAGAGTTCAGATCAGAATCACATCCATAACCTATGGAGGAATCTGAAAGCAGCAGTTGGTGGAGGGCTCCCTCAAACATTGAACAATTATAGCAGTTTGCTGCAGAAGAGTGGGCCAAATTGCAAGTTGAAAGGTACAGCAAGCTCACTGATGGCTCCAAGAAGCATTTATCTGAAGTTATCTTGGCCAAAGGCCATGTAACCAACTTCAAGCTCCAACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220411 lncRNA upstream 50513 83772822 ~ 83773070 (+) True G194611
TU220410 lncRNA upstream 51397 83771971 ~ 83772186 (+) True G194610
TU220403 lncRNA upstream 58816 83764473 ~ 83764767 (+) True G194603
TU220395 lncRNA upstream 72741 83750537 ~ 83750842 (+) True G194595
TU220394 lncRNA upstream 73326 83750016 ~ 83750257 (+) True G194594
TU220620 lncRNA downstream 50904 84030729 ~ 84032440 (+) True G194804
TU220622 lncRNA downstream 98463 84078288 ~ 84142920 (+) True G194806
TU220783 lncRNA downstream 201505 84181330 ~ 84183318 (+) True G194947
TU220764 lncRNA downstream 309787 84289612 ~ 84295747 (+) False LOC110497999
TU220765 lncRNA downstream 309787 84289612 ~ 84295747 (+) False LOC110497999
LOC110497962 mRNA upstream 4894 83814200 ~ 83818689 (+) True LOC110497962
XM_021574407.2 mRNA upstream 141174 83661951 ~ 83682409 (+) True LOC110497928
XM_036934304.1 mRNA upstream 212287 83498149 ~ 83611296 (+) True LOC110502224
XM_021574395.2 mRNA upstream 351800 83433218 ~ 83471783 (+) False LOC110497903
XM_021574474.2 mRNA downstream 21255 84001080 ~ 84025490 (+) True LOC110497974
XM_036957209.1 mRNA downstream 198247 84178072 ~ 84291132 (+) False LOC110497999
XM_036957212.1 mRNA downstream 198247 84178072 ~ 84291132 (+) False LOC110497999
XM_036957214.1 mRNA downstream 198247 84178072 ~ 84291132 (+) False LOC110497999
XM_036957221.1 mRNA downstream 198247 84178072 ~ 84291132 (+) False LOC110497999
TU220190 other upstream 263985 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 698618 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 1169153 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 1401401 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1419748 82401113 ~ 82403835 (+) True G193170
TU220995 other downstream 616585 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1030639 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2155791 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3057686 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 3170377 87150202 ~ 87150490 (+) True G198575

Expression Profile