RNA id: XR_005038553.1


Basic Information

Item Value
RNA id XR_005038553.1
length 6017
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC110497999
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84178072 ~ 84295747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCTGTTCTCATTGCAACTTTTGCAGGGTCTCTACAGTCATGTTATACTCTAGCTCAAGTCAACCTGCAATTTGGCTCAACATTTGAGCTAAAAACAATTCACAATCCGCGGGGTTGTGTTGCAGAAATCTTCCTTTATAATTTTCCCGTGGACTGAGCACGAATTTGGAACCCTGGATGGGATTTTAGACATGTTTTCTCACTAATAAACTGGGCTAgtaatgcaggagacagagactCTGTCAGTGGCTCAAGATGGCAGATTTTTATTGAGTTCTGAACAGATATCTTGCTTTATTTTCTGCCATGAATAACAGAAGTCCTTGCACCGATGGCCCCTGTGTACGAAGgtATGGCCTCGCAAGTGCAAGTCTTGTCCCCTCAATCTCTCCAGTCAAGTGCCTTCTTTAGCGTGAAGAAGCTGAAGGTGGAGCAGAGTTCATACTGGGATATGACAGGGTACGGCACACACAGCAAAGTCGTCTACAACCAGAACAGCAAGCAGCAATTGTCCCAAGCCACCTCTCTGGGAATCAATTCCTCTCTGCCCTACGAGCAGCCTGCGCTCATCTTCCCGGCGAGTGCAGGGAAAATTGTGGTTGCCTCGGCCAGCAGTACCTCAGGCACTGCAGGGCCTCTGGGGCCTCTGTTGAGCTTGGGCGGTAGCGGTAGCGGCGGTGGAAGCAGTAGCAGTAGCGGAGGAGGAAGCGGTGGAGCAGTCCACAACTTGACCCGTCGCAGCACCGTCAGCCTGCTGGACACCTACCAGCGATGCGGGCTTAAGCGCAAGAGTGAGGAGCTCgacaacagcaacagcagcgtGACGATCATCGAGGAACACGGCGGCAGCACAACGATGATCCAGAACGCAGCCAGCGGGGCCACAGTGGCTATCGCCACGGCAACGGCCACATCGACAGCCACTTCCAAGAACAGTGGTTCCAACAATGAAGGGGACTACCAGTTGGTGCAGCACGAGGTGGTCTGCTCCATGACCAACACCTACGAGGTGCTAGAGTTCTTGGGCAGAGGCACCTTTGGCCAAGTGGTCAAGTGCTGGAAGAGGGGCACCAACGAGATTGTGGCCATCAAGATCCTGAAGAACCACCCATCGTACGCGCGCCAGGGCCAGATCGAGGTGAGCATCCTGGCCCGGTTGAGCACAGAGAGTGCAGACGACTTCAACTTTGTGCGTGCCTACGAGTGCTTCCAGCACAAGAACCACACGTGCCTGGTGTTCGAGATGCTGGAGCAGAACCTGTACGACTTCCTCAAGCAGAACAAGTTCAGTCCACTGCCGTTGAAGTACATTAGGCCAGTCTTACAGCAGGTGGCCACAGCCCTGATGAAACTCAAGAGCCTGGGCCTGATCCACGCTGACCTGAAGCCAGAGAACATCATGTTGGTGGACCCCTCCAGGCAGCCCTACCGAGTCAAGGTCATTGACTTTGGCTCGGCCAGCCACGTGTCCAAAGCCGTGTGCTCCACCTACCTGCAGTCCAGATACTACAGagctCCGGAGATCATCCTGGGCCTGCCCTTCTGTGAGGCCATCGACATGTGGTCCCTGGGCTGTGTCATCGCTGAGCTCTTCCTAGGCTGGCCCCTCTACCCAGGGGCCTCCGAGTATGACCAGATCCGATACATCTCTCAGACACAGGGGCTGCCTGCGGAGTACCTCCTGAGTGCAGGGACTAAGACTACCAGATTCTTCAACAGAGACACAGACTCCACCAACTACCCCCTGTGGAGGCTGAAGACACCAGAGGACCATGAGGGAGAGACGGTGATCAAGTCCAAGGAGGCCCGGAAGTACATCTTTAACTGCCTGGATGATATGGCTCAGGTTCAGAGCACTGTGAATATGACATCAGATTTGGAGGGCAGTGACATGCTGGCGGAGAAGGCAGACCGTAGAGAGTTCATCGACTTGTTGACCAAGATGCTTACGATCGACGCGGACAAACGGATCACCCCCATCGAGACCCTCAATCACCCATTCGTAACCATGACCCACCTCCTTGACTTCCCCCACAGCACACATGTCAAGTCCTGCTTCCAGAACATGGACATCTGTAAGCGTCGTGTGGGCATGTATGACACAGTCAACCAGAGCAAGACCCCTTTCATCACCCACGTGGCCCCCAGCACCTCTACCAACCTTACCATGACCTTCAACAACCAGCTCAACACTGTGCACAACCAGGCCACCAACCTGGCTCCCTCCACCACCAGTACCACCCTTTCCCTTGGCAACCCCGATGTCTCCATATTAAACTACCGATCTGCACTCTACCAGCCCTCAGCGGCCTCCATGGCTGCCGTGGCACAGAGGAGCATGCCCCTACATCCTGTGGCCCCTCAGCTCTGTGCTGCCCGGCCTGACCCCTTCCAGCAGGCCCTCATCGTCTGCCAACCTGGCTTCCAAGGTATGCAGGCTTCCCCGTCCAAACACACGGGCTACTCTGTGCGGATGGATAACGCCGTTCCCATAGTGACGCAGGCCCCCGGCACCCAGCCCCTGCAGATCCAGCCAGGCCTGTTGACACAGCAGGCCTGGCCCAATGGCACCCAGCAGATCCTCCTCCCCCCCGCCTGGCAGCAGCTCACCCACACCTCAGTCCAGCACGCCACCGTCATCCCTGACTCCATGACGGCCTCCCAGCCCCTGGCTAACTGGAGGAATTCTCACCCACACGGCGGCCATTACAATCCCATCATGCAACAGCCGGCGCTGCTGGCTGGCCACGTCACCCTCCCATCCAACCACAACCAGCCTCTCAATGTGGGCGTGGCCCATGTGATGAGGCAACCGTCAACCAATAACAACAACTCCTCTTCCAAAAAGAACAAGCAGCATCATATGACTGCCAGGAACGTGTCTGCGTACGAGGTGTCCTCCTCCCAGGCGGTACAATCACCACAGCGCTCCAAGCGGCTGAAGGAGAACACCCCTCCACGTTGTGCTGTGCTTCAGAACAACGGCCCTTCCTCCAGCTCCAGCTGCGGACCCCCCCTGGGCTGTGGAGGGTGGGGACGGGGCGAGGCAGAGCAGGCCTCTAGCACCACCAGGGATCATCATCAGCACCACAACAGGCAGCGTCAGACCATCATCATCCCTGATACGCCCAGCCCTGCCGTCAGCATCATCACCATCAGCAGTGACACGGACGAGGAGGATGATCACAAGAATAGCAACACCAACCATACTAGGTACAGCTCATTCAGGCAGAGGAAGAACGTCATCAGCTGTGTCACAGTACACGACTCCCCCGACTCTGACTCATCCAGTAACAACAGTCCCTATGCAGTAGAGTCCAGGCAGCCCAACAACAACGGCTACCATGACTCCAAGACCACCCTGCTGGACAACTACAGCAACGGAAACAACCTTCGCTCCATCATCATCCCCCCTCTGAAGAGCCAGTCCAGCGAGGTGCTGAGCGAGTGTGAGCGCCTGATGCCAGGTACCTACACAGATATCTACACAGATGCAATGAATCATCAGAATTCGGCATACAAGTTCAAAACCTCCAACGGTGCGGGCATGGTGTCTGGCAACAACCACCTGTCAGGGGGCGTGGCTTACCGACAGCAGCGCTCGGGGCCAAACCCcttccagcagcagcagcctctcaATCTCAGCCAGGTATGGAGAGAGAGCCAAGCCCAGCATCACATGGTAACTGAGCGCAACGGAGGCCACCGGCACCAGCAGGCTTACATCACCCCAACCATCGCAGCCCAGGCCCCCTACTCCTTCCAGCACCACAACAGCCCCTCTCACACTGCCAACGTCCACACCCACCTGTCTGCCACCCACCTGGCTGCCACCCACCTGCCCGGCCAGCCCCACCTCTACACCTACACTGCCACGCCCGCAGCACTGGGCTCCACGGGCACTGTGGCCCACCTGGTGGCAACCCCGGGCTCTGCCCGCCACACGGTCCAGCACACCACATACCACACACCGGGCATTGTTCACCAGGTACCCGTCAGCATGGGGCACCACGTGCTGCCCTCACCCACCCTGCACCACAGCCAGTACCAGGCTCAGTTTGCTCACCAGACGTACATCAGCGCCTCGCCTGCCTCCACTGTCTACACTGGATACCCACTGAGCCCCACCAAGGTGAACCAGTACCCTTACCTCTAGAGCCAAGCCAACACACTGGAGACCCAGACCCCCAGATCCAGATCCCAGcaatgctgctgctgctcactccatgtcctccctccccatccccactccacagacagagagatagagagagagagacatgcaatCTTCATAAAACTGTCACGTTTACTTGAAGACATAATGACCGAGAGGAAAAGCAAGGTCTTCATAACGGGCctttgggagaggtggaggctTTTTGTTCTCCTAAAACagctttttgtttgtttttgttttcccgTCTTGAATTGGAAAGGGACTGTTTTAACAAGGGGTCCCTCTCTGAATGTTGGAATTCCCCTCATAAGAATTCCCAAGAATTCCCGTGAGGATTTGGGAATGAAGGTGAAATACGGAAACCTGCTGCTCTTCAAAGAATACAACAAATAATGATGGCCTTGAACTGTCTTAAACATTTCCAAATCATTCAatgtgtgggggagagagaacgaAGCATCCCTCCACATCCCACACCCATCCTTTTCCAAAAGACAACTGGAGTCCGGAGTCTTCTGGAAATATAATCAacaaaagacaacaaaaaaaaagaaggttTGTTTTTTAGTTCTCACCTTTTTGAGGAGACTTATGTTTTAGCTATAGGAGTTGTAGCTGAGCCCTGTTTTTAGAATGTAGCAGTCTGCACCCAGATTATTTTATGAATAACTTTTTCTGATACCAATAGAATTGCTTTGTTCCTCTTCTTTCATTGTGATTGCACAAAGTGGTTATAATAACATAGGCATGTACAACGTgattgtctgtgtgtgcgtgtgctacTGTCAGCCATGTGTGTGTAGTCCACCTCTTGCACCTTTGTGCTATAATACTTGGAATCCTCCGTAGTCTTAGGTTTGACCATTGTTCCCTCGTAGTGCCTTACAGATATAACCACACAGTTTACTTCGCTGGAACCTTGAGAACCAACAGACTAGCTGGAACTGGTTCCTTTCTTTGACGTCTTATTGCCGGGGCAGATTTGATTTCTCTTCCAGGTGTAGGCTTAGCCCCTAGCTCTGTGTCCTATCCTTATGACATTATACTACAGCCATAAGAGGTTAGAGTTCATATTTAACTGACCTTTGGCTTTTTTGTAAAGTGTACATGAGTTTAACTTGCCTGGGGTACTGAACCAAAGTCGTTAGATCAATCCTCTTTACATTGTGTGCTGGATATACATTTTAATTTGTGTACAGTATAACTGTAAGTCACCATGGCTCACATACATACAATGGCTTTAGTTTGAGATGTGTTACTTTTATATCACACAAGGGAGTCGGTGCCCAGGAATAATAGAACAGAGAAGTATCAGCACAAGGATCCAATTAGGGGTAATGGAAAAAGCAAAAATACAAGAAAGTGACTGTCAAAAACATTTATGTGGTGAGTTCATTTGACACATCAATAGTCCAGAGTTCGAGAAAAAATAGGAATCTGAGGTTAAACGCTAAGCCAGTAGAAAGGCCTGATGGGAAGTGGTGGTTGCTATGGCGGCAATTTTCAGAAGGCCACCGAGAGAGAACCTGGTTGTTTGCAGTAGGGAAGCAGAGTATTGAGGACTGTTGAGAGGGGTTGCTCGGTAGGAgtaagacctgggttcaaatactatttgaaatcttttaaATAATTCTAACGTTTGCTTTAGAATGCCTGCAGTGCCAGATGGGCGGCGCTTGCAGTTTTTCAACTATTGCATTGCACCAGGCAAActcaatcaagcccagctaaagtatttgaaattattttaaatagtatttcaacccaggtctggcagaagtgagtgagtgagtgagtgagtgaatgaccgaccgagtgagtgagtgagtgagtgagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220622 lncRNA upstream 35152 84078288 ~ 84142920 (+) True G194806
TU220620 lncRNA upstream 145632 84030729 ~ 84032440 (+) True G194804
TU220603 lncRNA upstream 228620 83948071 ~ 83949452 (+) False G194788
TU220604 lncRNA upstream 228620 83949096 ~ 83949452 (+) True G194788
TU220587 lncRNA upstream 252829 83919370 ~ 83925243 (+) True G194777
TU220999 lncRNA downstream 312820 84603952 ~ 84681822 (+) False G195158
TU220998 lncRNA downstream 390263 84681395 ~ 84685605 (+) True G195158
TU221102 lncRNA downstream 435554 84726686 ~ 84727394 (+) True G195247
TU221158 lncRNA downstream 501435 84792567 ~ 84800126 (+) True G195296
TU221159 lncRNA downstream 506104 84797236 ~ 84804707 (+) True G195297
XM_021574474.2 mRNA upstream 152582 84001080 ~ 84025490 (+) True LOC110497974
XM_036957189.1 mRNA upstream 198247 83823583 ~ 83979825 (+) False LOC110497968
XM_036957291.1 mRNA downstream 5424 84296556 ~ 84382755 (+) False LOC110498007
XM_036957284.1 mRNA downstream 5425 84296557 ~ 84382755 (+) False LOC110498007
XM_036957270.1 mRNA downstream 5427 84296559 ~ 84382755 (+) False LOC110498007
XM_036957279.1 mRNA downstream 5428 84296560 ~ 84382755 (+) True LOC110498007
XR_005038559.1 mRNA downstream 133239 84424371 ~ 84538912 (+) False LOC110498015
TU220190 other upstream 618474 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 1053107 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 1523642 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 1755890 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1774237 82401113 ~ 82403835 (+) True G193170
TU220995 other downstream 305278 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 719332 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 1844484 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 2746379 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 2859070 87150202 ~ 87150490 (+) True G198575

Expression Profile