RNA id: XM_021574712.2


Basic Information

Item Value
RNA id XM_021574712.2
length 1731
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110498116
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85538383 ~ 85545472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTCAGGGTAATACAATAAAGTGAAACTGTCCTGGCCaggtactgtaggctatataaaGTAATCGCCTCAAGTGATTATCACTGAAGTGAAAGAAGATAGTCATACAGAAACACTACTAGACAAGCACACAATCAGCTATGTCGCCAAACAACAAGTGGATAGGGAGGGGCCTGCATGCCAGCCTGTTGTACCTGGTTTTATTTGTGTGCCTGGTGCGCACCGCTACTCTGGACGAAGAAGATATTGAGattgatgatgaggaggaggaagacctggAGTATgaatacagtataaaacaagacAGACACACCTGTGGAAGCGGTCAAACTGGTCAGTATCCATTCTGTAAGGACAAGGACCAGGTCATTCACCACTACGTCGACACAAGGGATGAGTGTGGAGAGACAGACTTCAAGAGAGTGCGGGGGGAAATGCAGCTGATGATCCAGGACCGACGAAAGAAGATGAAGGAGATCGTACACTCTGCAAAACTCATCGAGAAAAatgtggagagggagaaagaggacacTTTGCTGTTCCTGACTGAAGTGACACGGCTCATTCAGAAGACCTATGTAGATGTCATTGAGGAGATCGAAAAGAAGCAGAAAGCAGCAACAACCATGGCTATAGAGCACATTCTAGAGCTAACACAGGAAATCTCTAAACTACAGGAGAGAAGCTCTGAActggagcagctctcacacaTTGAGGACCACCTTCACCTTCTCCAGATGTTCCCGTCCCTGTGTACCCCACCGGCCACCATTGACTGGTCTGAGGTCAGCATTCACAGTGATCCAAGTGTGGGGTCTATGAGGAGAGCTGTGAACAAGCTGAGAGAAGCACTCAATAGTGAAGAGAGCAGGCTGTCTGCAGCTGAGTTGGGAAGGATTAAGAAGTGTGCAGTGAATGTGACTCTGGACCCTGACACAGCACATCCGTACCTCATTGTCTCTGAAGACGGGAAACAAGTGAGAATTGGAGATCTCCGGCAAAATGTCACAGATGGCCCTGAAAGGTTTAATTCAGTCGTTAATGTCCTAGCAAAGGAGGGCTTCTCCTCAGGGAGATTCTACTATGAGGTGCAGGTGAAAGGTAAGACTAGGTTGGATTTAGGAGTGGCCATAGAGTCCATAAACAGGAAGAGTGGGGGCACCCTGAGCCCTGGCCATGGATACCTGGCTATATGTCTGAGGGATGGGGATAGGTATGTAGCTGCTGAAAGCCCTGCTATCCTCATCGCTCTTAGCCAGAAGCCCCAGAAGATAGGGGTTTATGTTGATTATGAACAAGGCCAGGTCTCCTTCTATGATGTGGATAACAGGTCTCATATCTACTCCTTCACTGATTATTCTTTCAATAAGAAACTCTATCCCTTCTTTAGCACTGGCACCGACGACGATGGTGAAAACTCAGCCCCATTAGTCATTACCCCAGTCAATCAACAACTGAGTATTCATTTCTTCACTTTTGAAAAAGCCTGAAAATTGATAAAATACAACTTACaatgtgtatatacactgagtatacaaaatattagcaacaccttcctaatattgagttgcagccaacacttttgccctcagaacagcctaaattcatCATAGACTCTACAAAGTGTGGAAAGCGTTcaacagggatgttggcccatgttgactccaatgattcccacagttgtgtcaagttggctggatgtcatttgggtagtggaccattcttgataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223358 lncRNA downstream 54758 85483027 ~ 85483625 (-) True G197328
TU222759 lncRNA downstream 86300 85451850 ~ 85452083 (-) True G196784
TU222732 lncRNA downstream 104228 85431738 ~ 85434155 (-) True G196757
TU222725 lncRNA downstream 109735 85428237 ~ 85428648 (-) True G196750
TU222721 lncRNA downstream 111567 85421946 ~ 85426816 (-) True G196746
TU223427 lncRNA upstream 95066 85640538 ~ 85684526 (-) True G197394
TU223460 lncRNA upstream 118701 85664173 ~ 85745404 (-) True G197424
TU223483 lncRNA upstream 206969 85752441 ~ 85754218 (-) True G197441
TU223543 lncRNA upstream 285767 85831239 ~ 85836687 (-) False G197498
TU223613 lncRNA upstream 481418 86026890 ~ 86043305 (-) True G197552
XM_036957475.1 mRNA downstream 50587 85470939 ~ 85487796 (-) True LOC110502232
XM_021574603.2 mRNA downstream 435598 85058747 ~ 85102785 (-) True LOC110498041
XM_021574594.2 mRNA downstream 440329 85058747 ~ 85098054 (-) False LOC110498041
XM_021574569.2 mRNA downstream 627505 84596933 ~ 84910878 (-) False LOC110498022
XM_021574564.2 mRNA downstream 804996 84596933 ~ 84733387 (-) False LOC110498022
XM_036934325.1 mRNA upstream 151948 85697420 ~ 85699798 (-) True LOC118936851
XR_005038562.1 mRNA upstream 166067 85711539 ~ 85726478 (-) False LOC110502240
XR_005038565.1 mRNA upstream 166067 85711539 ~ 85726478 (-) False LOC110502240
XR_005038566.1 mRNA upstream 166067 85711539 ~ 85726478 (-) True LOC110502240
XM_021574752.2 mRNA upstream 188787 85734259 ~ 85748399 (-) True dennd11
TU221798 other downstream 898627 84609734 ~ 84639756 (-) True LOC110498022
TU221355 other downstream 1556216 83977965 ~ 83982167 (-) True G195486
TU221290 other downstream 1633932 83881540 ~ 83904451 (-) True G195427
TU220290 other downstream 1922349 83615566 ~ 83616034 (-) True G194491
TU219891 other downstream 2315239 83220022 ~ 83223144 (-) True LOC110502187
TU223542 other upstream 290827 85836299 ~ 85843493 (-) False G197498
TU223547 other upstream 290827 85836299 ~ 85843493 (-) False G197498
TU223549 other upstream 290827 85836299 ~ 85843493 (-) True G197498
TU223618 other upstream 414373 85959845 ~ 85963665 (-) True G197554
TU224521 other upstream 1357564 86903036 ~ 86903956 (-) True G198342

Expression Profile