RNA id: XR_005038562.1


Basic Information

Item Value
RNA id XR_005038562.1
length 3470
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110502240
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85711539 ~ 85726478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCAGCAACACCACTTCCCAGGTCTGAGTTGGGGGCTGGTTGCAGTGCTGCTCTACTGGGATGGAAAGCTTTGTGTGGCCAACTCCCTGCGCTCGCTCATCCAGTGCCTCCACTGCAAGACATTCACCTTGGAACTAAGTGAGGAGCTGTTGGCCCTCACCACACATTTCACAGATGAGCTGATGAGCCAGGGCCTGACGACGTGCCTACTGACGCTGGTATCAGAGATCAATGTGATGCGGGAGTTTGAGCGCCTTCAGTAAGAGCGTGGCCTGGGAAACGAGAAACATAGGAAAGAGGTACCTGTATCACAGCAGCACCAATCCAGAGGCGGCCTTCCAGAGCACTAAGATCCTCTGACGCATCGCCCGCTACCCCAACATCTACAACTGGCTGGTGGGAGACTTCACACATGACCAGGCTAGTCACTCCAACTCACCACCACTCCTTTCATTCGCTGCCTGCCAGACTTTCAGCTGGCTAAGAAGGAGGCGAGGATCCGCCACGAGACCCAGATCCTGAACCTTCTGATCACTTCCCTGGAGCTAAAGGCCCCCAACCTGGCCATCTATCTGGTGGGCTACGAGGTCAAGAAGCCCATCTCCTCCACCAACCTGCAGgtgtGCTGAGGTGCCCACAAAGCTGCCTGCATGCCATCCTGAGTCTGCTGCAGAGAGGCAGTGAGATACGCTTGGGTTCCGTGCTCACCATCCAGGCACCACACCTGGCTGAGCACTGTTACCAGGTCATCTACCAGCTGTGTGCGTGCTCGGACACGTCAGGCCCCACCATGCGATACCTGAGGACCAGCCAAGACTTCCTGTTCTCATCTGCAGCACCTGCCCTTCATTCTACCAAGTGAGCTCTTCACTGTCATATCGATACAGTGTGCTCCTATCCTGGTCTTCTCTCCGTCATCTGCAATGATCTGAAAACACAGGATAGGTGGTAGAAATATGGCAGATGCCAACCAGAGCATTTATACTCCTACAAAAACCCAGTCGTCTTTTTTAACAGAGCtgccagagagaaaggaaacTACTCCGGGTGTCAATCTTCTCTCTAAACCGTGTCTCTCCCCCTACGCTCTCATGTGATGAGATCTCCACCCTGTCCCAGATATCCTGGCTTATGAAGACAACGGGCATCGAGCTCAGAGTGACATCACTCAACCGCCAGCACTCACACACCCAGCGCCTCCTCCACCTTCTGCTGGACGACTAGCCTCACACTCGGCACGCAGATAAGACCtactactcactcactcactatgcACCCACACACTATGAAAGTTGGATGCATTGGATGTATTGTCATTCACTGATGTAAATGGGATACGAGGAAATGTGCAAAAAGCAAAACCCTTTACAGTTAGCCTCTTTGATTAGCTGATGAGGAGACGGGCATGGAGGAGGAGTCCAAATCTGTCAGCTGATTCCTGCACTTATGTCTAGTTCTTCAGTCTTCACATATTTGTGAATCATAATGCgttctgtcattctgtctgtaaTAATCCTGGTATGAATCATATGCATTCTGTGACAATAGagcaggggtactcaactctgACCCTTCGAGGTcaggagcctgctggttttctcttctacctgatcattaattgcacacacctagGGTTCCAGGTCTAAATCGGTCCCTGATATTAGAGGGGAATAATGagaaaatgcagtggaactggagttgagtttgagggctacAGAGCCTCTGTATTAGCAGTTGCAAAAGCTAAGAGCCCCTCTCCTGCCCTGACTCAAGACCTGTCCCTGCCCTCGGGCCTGTACTCTCGTGTGCCCAACCTGGGCCTGGTGCTGTTCCTACTGAAGAACATCGCTGCATACTTCTTCCACCAGAGCCAGACAAGCTCTGGGAAAGCTGCAGTGCCTGGAGCAGCCACCCCCTGAGGAGCTCAAAGAGGAAACACACATTCAACCTATTGACAAGGTGATAGTGCCTCAGCCCtaaccctcctctatccctgtctctctgtttggtgTGTAGCTGTGTCTGTGTTTGGTACTGGAGTAGAGAATCTCTTTGGTCCAGAGGAGCCTCCTGGTCCAGCTTATCAACAACAGGGCCAAGCTGCTGGCCTTCTGCTCCTGTATCCTACCATATTAAAATAAACCAGATGAAGTCACACCAGACTTCTGTGCAGGGGTTAGGTAAAGGGACTGATCTAATGGTTTAGGGTTCATCTCAGGGTGGTTTTGATTTTAGGGATTTTGTAGGATGATGATGTGCTGTTGGGTATGTATGATTAATGACGTGCCCTGAGCTGTAGCTAGTTCATGTGAGAATGAGAAATACCTTGACCTAACCACACCTCCGATGTGATTGAGACCTGCCTGTTTGTACTTTGGCGTCACCTGGAGTTCGACCTGTTGTACTGCACCCCCACCGACCCCAAGGACTCCCTGATGCCTGGAGCCAGCGAGGTTCTCCCCAGGCTAACCCTGTCTGGAGATTGAGATCGGACTGGGTTTTGGTAGAAGTCACCCTTAATCACAGATCTAGAATGCGATAACGCTACCCTCTAGCCTAACCTTGATCATGAGGGGAATGAAAAATCTGACCCTGTTTCAGTGGGCATCATCCAACTCCAGATGACTGCAGGAAATGTGATGTTAGTGGTGTTTCTCGAATTCCCCAGACTCATTTGGACGTGCCCTGGGTCTGGCCAGTCAGCCAGCAAGAGCAGTAAGACCCTGTGTCTCCAGCTGCAGAGTGACATGGGGTCCGGCTTTGGGGAGGCTCTACAGAGGAAGCTGCAGAGTGACATGGGGGCAGGCTCTACAGAGGAAGCTGCAGAGTGACATGGGGGCAGGCTCTACAGAGGAAGCTGCAGGAGGTGGAGGGACTGAACAGCCAGGTCCGCTCCCATTCCACCTTCATCCAGGCCCTGGTACGCAGGATACAAGGCCTGTTCCACCAGCCCAAGAGCTGAAACAGTCAACGACCAATACAATGAACAAGACCTAAAACCTGTGGAACAATGTTCACCTAAAGAGTACACCAGGCCAAGGATATGGACATTCCAGAACCAGACACACCTGATCTTGAGAATTCTATTTAAACCAGACTCGACTTCCCCTATTCACTCCAGTCTATTCTACTGGCCTCTACTGTCCTCCGTCTCTCCTAAGACGGGCGCTGTGCAATGTTAGTCTGACTGATGTAGTTTGCCCAATATTTTTTAATTTTCTTCACAAAACACACTTTTTGGTataatggattttttttctataatgtAATGATTTTCCAATGATTTATTGATTTTATTGCAGGGCTATTCAACTCTTCGTGGTCTGGagcctgtttttttgttttgttctccCTGATacttaattgcacccacctggtgtaaATCAGTCCATGATTAGAGGGGAACGATAAAAAAAGTGGTACTGGCTTTGAGGTCAAAGGGTTTGTCTCATCTTTTGTAACAGGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223427 lncRNA downstream 27013 85640538 ~ 85684526 (-) True G197394
TU223358 lncRNA downstream 227914 85483027 ~ 85483625 (-) True G197328
TU222759 lncRNA downstream 259456 85451850 ~ 85452083 (-) True G196784
TU222732 lncRNA downstream 277384 85431738 ~ 85434155 (-) True G196757
TU222725 lncRNA downstream 282891 85428237 ~ 85428648 (-) True G196750
TU223483 lncRNA upstream 25963 85752441 ~ 85754218 (-) True G197441
TU223543 lncRNA upstream 104761 85831239 ~ 85836687 (-) False G197498
TU223613 lncRNA upstream 300412 86026890 ~ 86043305 (-) True G197552
TU223683 lncRNA upstream 347795 86074273 ~ 86074839 (-) True G197613
TU223706 lncRNA upstream 382585 86109063 ~ 86109468 (-) True G197636
XM_036934325.1 mRNA downstream 11741 85697420 ~ 85699798 (-) True LOC118936851
XM_021574712.2 mRNA downstream 166067 85538383 ~ 85545472 (-) True LOC110498116
XM_036957475.1 mRNA downstream 223743 85470939 ~ 85487796 (-) True LOC110502232
XM_021574603.2 mRNA downstream 608754 85058747 ~ 85102785 (-) True LOC110498041
XM_021574594.2 mRNA downstream 613485 85058747 ~ 85098054 (-) False LOC110498041
XM_021574752.2 mRNA upstream 7781 85734259 ~ 85748399 (-) True dennd11
XM_021574785.2 mRNA upstream 39610 85766088 ~ 85802293 (-) False bcl2l13
XM_036957590.1 mRNA upstream 39610 85766088 ~ 85802952 (-) True bcl2l13
LOC110502245 mRNA upstream 77200 85803678 ~ 85804353 (-) True LOC110502245
XR_005034309.1 mRNA upstream 109482 85835960 ~ 85838800 (-) True LOC118936424
TU221798 other downstream 1071783 84609734 ~ 84639756 (-) True LOC110498022
TU221355 other downstream 1729372 83977965 ~ 83982167 (-) True G195486
TU221290 other downstream 1807088 83881540 ~ 83904451 (-) True G195427
TU220290 other downstream 2095505 83615566 ~ 83616034 (-) True G194491
TU219891 other downstream 2488395 83220022 ~ 83223144 (-) True LOC110502187
TU223542 other upstream 109821 85836299 ~ 85843493 (-) False G197498
TU223547 other upstream 109821 85836299 ~ 85843493 (-) False G197498
TU223549 other upstream 109821 85836299 ~ 85843493 (-) True G197498
TU223618 other upstream 233367 85959845 ~ 85963665 (-) True G197554
TU224521 other upstream 1176558 86903036 ~ 86903956 (-) True G198342

Expression Profile