RNA id: XM_021574842.2


Basic Information

Item Value
RNA id XM_021574842.2
length 8029
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC110498211
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85845868 ~ 85900894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATACTTTAATTTGAGTATAATTACATGTAAACAAATAGGTTGATGGGTACCATAAATGCTTAGTCACTAAGCATTTATGATACCCAGGATTTTGTATATTTAAATACACGGCGTAAGTAGCTAACTGAACACCCCTCCTCGAGCCACGCTGGTAGCGCCACCCCATCTGTTCAGCGCTTGTGAAATTCTGATTGAAACAGATTGTAGCAAGCGCTCTCCGACCTGGGTTGCAATGGCAACTGACTGGATGGAACATCAACAGCAACTTTTGTCCTATTTTTTAAGGAATTAACGAGATTTTACACTGATACCTTGAGGAAATTATTTCTAATGTGAGAAACAAAGTTATACAATTTAAGGTCCGAAAATGTTCCAGGGATGTACAATTTCTGTGGAAGAGATCCAGTCTTGGTGGGAAGTCCCCGCCATAGCTCATTTCTGTTCGCTGTTCAGGACGGCATTCAACCTACCAGACTTTGAAATTGAGgAGCTGGAAGAGGCACTACAGAAGCAGGACATAGACTTTCTGGCTGACCTCCTCGTCTCACTGCTGCAAGGATGCTACCAGCGCACAGACATCACCCCCCAGGCATTCAGCGATTACCTGGACGACATCATCAACTACCGCTGGGAGTTGGAGGAGGGGAAGCCTAACCCACTGCGCCAGGGGCCCTTTGAGGAGCTGGCCCCACGCACGCAGGTGGAACTGCTGCACAGGCTGTGTGACTACCGCCTGGACGCTGCCGATGTCTTCGACCTGCTCAAGGGCTTGGATGCGGACAGCCTGCGCGTGGAGCCGTTGGGTCAAGATGGGAACGGTACCCTCTACTGGTACTTCTATGGTACCCGCATGTACAAAGAGGACCCGGTCAAGAGGAAAGCAGAGCAGCTCCGtGAAGCCCTTGTGATCAAACCAGCAGAGAAGAGGAAAAGAGGAAGACCACCAAAGAAGAAAGTGGAGGAGATCCAGCTAAGTGAGGTGGAGAGCGAAGTGAAGAAGGAGAATGGACTGGAAGGTCTGCACTCAGGCACAGACCGCGAGCGTGGCGCCTGGTCCCTGGTGTGTGACACAGAGGAGCAGTGGGCCAGTCTGGCTGAGAGCATCAAGGACAAAACGTCCCCCCAGGACCGCCACCTCTACCGCATCATCAGCCAGAACTTCCTCCCTGAGATCAGCAGCATGATCGAGCTCAAGGAGAATGAGCAGAAGCAGAGGCTGCTGGACCCCACCCCAGTACGCAGCTCTTACCGGCTCTCTGAGAAACGCATGAGccaagaggaggagGACACGCTGCAAGCCATAGCTGACGTGGAGCAGCAGAAACAGAGGGATGTGGACATGGACAGGCAGGCCCTGCTGGCAGAGCAGAAACGAGAGGAGGAGATGCTGCTTCAGGAGGAGCgtcagagagaggagcaggagagagtcAAAGCTGTGGAGGAGCGAGCGCGGCGGCGGAAGCTGCGTGAGGAGAAGGCCTGGTTGATATCCCAGGGGAAGGACCTGCCCCCCGAACTGCTGCACCTGGAGCCCCACTCACCCATCCAACGTGCCCGCAGGACGAAAGCGTTCTATGAAATTGATGATGATTATACAGCGTTGTACAAAGTGTTGGAGGCCCTGAAAGCCCACAAAGACTCCTGGCCTTTCTTGGAGCCTGTGGATGAATCCTATGCCCCCAACTATAATGAGATCATTCAGACTCCGATGGACCTGTCCACCATCGAGAGGAAGCTGAATGAAGGGGAGTACATCGCCAAGGAGGAGTTTGTGTCTGACGTGAAGCTCATGTTTGAGAATTGCATGGAGTACAATGGGGAAGACAGTGAGTACAGCATCATGGCGGAGTCCCTGGAGCGCTGTTTCAGCCGAGCCCTGCTCAAGCACTTGCCTTCGGAGGACGGTGACACGGACGAAGAGTTCCACGTGTGTGGTGAGGACCGTGAGAAAGACCGCAAGGAGAAGAGGCGGAGCAAAGGCCCCAAACAGGCGGGGCCAGAGCGCTTGGGCCGAGCCACTGAGCATGCCTCGCGCAAACGGACACATCCAGGGGGCAAGGGCAGCACCGCCATGGAGGAGGGGAACAAGGTGGCCCAGCCTCCCCCTCCCACCCACTGGGCCAACAGACACCCACACCCCCACAGCATgccacatggacaaccccaccCTGGGAATCTATACCACCCAGCACAGCAGCAGCTCCAGCACCCCCCTGGTCCACACATGTATGGTCAGAGGATGGCCATGGACCCCCGCTACGCCTACCCTCACCCTGGACAGGGACACATGCCCCGGCCTGGAGACCCCAATGCTCACCACATGCCTCAACATTACAACATGCAGCCACACCTGGGGGATGGTCACCACATTGGCCCTAGATACCAGGTGGGGCCTGATGGCCGGCCTCTCCATCCCCAGCACCACCAGCAGCAGCACCCCTACATGGGTCCCACCCACGGCCCCTCACTGGGCCCCCGCCCTGTGGCCCTCCAGTCTGGGGGCCTCTGCACCCCCACGCCCGAAGGCAACATGTACCCGTCCCGCCAACGCACCGACGGCCACCCCATGCACCCCGGTGGGAACCGTTACCCTGGGCCTGACGTCCCACTACAACACAACTACCCTGCCTTTCGTCCAGGCATGGGCGTGCCTCCTAGCATGTGGTCAGGGATGAACCACCAAGGCCAGCAGAGGCCCAGTGGACCTGGGATGCAGGAGCAGAATATGGCTAACCATCCGCAGCACCCCTATTTTCATGGGGGTCCACGTCCCATGGGCCCCAAACCCTGGCCAGAGCAGCCTGGTGGCCCTGGAGggtaccccccacccccaaatAGCCAGTACAGGATGCCCTGTGGCATCAGCACCTCCCCGGGGCCCATGGCCCTGCGGCCTCCCATGCCTCATCAGGACTCACGGCAGCGTCTGGCCTCCATGCTGGAGAGCCCAGAGATGATTGCCCTGCAGCAGCTGTCTGCTTCCTCCACCGGACTCCCTGCTGGCTCCTCGCGCCAGCTCATGGGCAACCTTCAGCAGCAACCCCCACAGGGAGTTGGCAGCGCACCAACTCAAGCTCAGCCCTCGCAGCACCCACCTCCCCCTGAAATTCAGCTGCTGCGTCCTGCCAGAGACGATGGCCCAGATAGCCAGCCTGCCCATCACGCAGACATGCAGCCCAAAGAGTTCACATCAGATCACAAAACGACCAACAACAACCATGCAGGAACGCGGATAACCCCCGTCCAGTCTGATCAGGATCGTTCCACAGAGCCTCCCAGTCACCCCACTGGGGGTATGCAGAGCCCCTCGGCTCCAAACTTGGGCAGATCACAGGAGAGGGGTAGCGGGACCGGGGAGCAGGCTGCGTCCCGGCCGGGACACCCACAGAGCTCAGAGACAACCGGCAaccaggagggggagagaagaggacagtctGTCTGCCAGACTCCCACTCAACAGAACAACCCTTCCATTGTTCCTCCTCCACGCCCCCACAATTCACCTCCCTCCCAGAACTCTCCGCACTCCCAGAATGCTCTACAGCATATAACCCAGATCCCCACTCGGCAAATCCCAGAAAATGCCCCTCACCCTAAGAACGCCCATCAACACATGATCCAGAATGCACAGCAACAAAACATCCTTCAACATATCAGTCAGAAAACCCCACAGCAAGGATCCCAAAACCCTCAGAACACACCTCCACATGTGGCTCAGAATCCCCTTCAACGTGGTCCACAGCCAAGCCCCATGCATGGAATGCCAAAATGCGCCCCCCAAGGGGCCCAGCCTGGCCCTGGTCCACCACAGCCAGCCCCTTTCACCTCCCTGCCCCCCAGCCACCCTGTGTCCCAGCTGcctccccagcccagcccagccgaCCATGGAGACCAGAGGCCCAGCGAGCCCACTAGCAGAAGGgattctggaggcagctctggtAACCCCAGCATAATGAAGTCTGGACCTCCCAACAGCATCTATAAACAACAGTCGTTCAGTCCCAATGTGCAACAGACTCAGTTGGGTAACCAGGGCAGTCTGGGGCCAAGGGGACCAGCACCTGGTCACATCCCAGCCATGCCTCCCCACTCTCCGGGCCAGGTTGCTGGAGCCATGGGCAGCCAAACACATCCACACTATGGTCAACCTATGGGCAGGCCCATGCCCCCTTCAAATCGGCAGCCTTACCCAAACCAAGCTATGCCCCAGACCATGAACCCAAACCATAACCCTGCCGGCTACCCCACCTACCACCAGCATGGAGCTTCCTATCCATACCACATGGCCCAGCAGCAGCATCTCCAGGGCCACACCAACATGTACCCCCAGTACCAGCAGCAACACTTATACCCCCAGCCCCAGGGCAACAGCCGGGGGGGCTACCCACCTGAGGAGTGGCATAGGCAGCAGCAATACCAGCCTCGCCACCCCATGCCCTCCAACACCTACCTGCCTGCAGCCAGTGCCAAGGTCAATGGGTGCCTGAAGGAGGGCAGCAGCATGGGCTCCCCCCTGGGCTCTGAGGGCTCCGGGGTCAGCTTGATGTCCCCAAGTCTCCTGCCCGAGGGCCTCCATGGAGGCTCTGCAGGGAAGGAGAGCAGGGAGGCTGGCAGCCCAATGAAGCCTCAGCATGCTCGGGTGGAGGAGACCTCAGAGCGGCCAGAGAGCCCTAAAGAGATCCTGGACCTGGACAGCCACAACGCTGCTGCACGCCGCTGGAGTTCCCAGCCCCTGCCTCAAGTGGCCAACTTCCTGTACGACCCCCGAGCAGTGCATCCTGGGATGCAGCAGGGTGGGGCCCCACCCCCCCACATGATTTCTCGGCCTCCATACCCTAGCCAGCCTGGCTTTCCTAGTGGACACTACACTCCCCAAAGACCCCACCCTCACCTCATGGAGGCCCTGCAGCGGCCCCAGCACCTGCCCTTTCACCCGGGACAGACCCACATGGCCATTTACAGACACCCCCAGACTGAAGGCCACTTCCAAGGCATGACGGTCCAGCAGAGAGGCCTGGGACCTGAACACTTCCTTCACCCAGGGCAGCAGATGATGTCTCCCAGTGGTCCCAGCAGTAAACAAGGAGTTTAAGCAACTCTGTGGAAGCAGGGTAAAGGACAAATGCAACAAAACCTTTACACAAATTGGTGCCTGCATATCATCCATGACGACAACCTGTGTGCTTGCCTGTGTCTCTCCTGTCTTAAGACTTTAAATGTGACTGCTGTCGGAACTGATGTTTTCTGCTGCGGAGCGGTTCAAAATGGactctgtcctctgtctgtgtTCGAGGGCACCAGTAAGTAGGGCTCCCTCTGCATCGGACAGGAGATGTGAAGAGTGATACAGGCAATGGAGACACATTTATTGGAGTCTCTTTAGGGAATGAGTTCTTTGCCCCTGGGGATGTTTGTCTGCTTTGTGTGGAACCCTCACTGAGACTGCCTCTGCAGAGACATGGCCCTGTCTGTCTTCATGCCTGTGGACTCCCAGTCAAGTTCAGACTGTACAGCTGGTCCCTCCCTCTAGGCCTGGCCAGCAAGAACATCTGGAGACCCTGCTTCTCTGTCTGCAGGCTGGTTGTCTGTGTAAACGCAGGCTTTAAGGGGTCTATTGACATGGTCTGATTGTGGTGCTCTGTTTGACCTTTTTTACATTATTTTCTCACACACTGGATTTGTCTGGAGAAGGCTCTCCCCTTTGTCTATAGCTCTCTATGGACCTCCAGCCTGGTCTTCTCAGAGCCTCTCCATGGACAAAAGGAGCTGGTGTGGTAAGAGGAGAGCACTGGTGTTACTTTGTGTTTTTTCGTTTTCGTCTCCAAATGTTTTTAGACTCAGGTGTAGAAAAGGAGGTACTTTAAGACTGTAGAGAAGCCGTCATCAGAACCCTgtcgacagacacacacacacacatgccttgCAGTTGCCTTTGTTTCCTTCATGTTGAATGTATGTGTGAATGAGTTCGATATATGTAGATAGATGAACAGCACAGGAGCCCCGCCATGTGACGGGACAGAAGATGATGGAGGATTGCCTTTCGGGAAAAAGGAACCCGTTCTGAAAAGGGGAGCTTTCTGTCCATTTCCACCTCGACTAAAACACAGCTTTTTTTGCTGTTCCGGTGTAATTTTATGCATCCTTCAAGACTGCCTTCACTATgagaatgtattttatttcagaCCTGCAGAGAGCCTTCTCTGCTATGCACTAGGGATAGTCTACAACTACTGGAATTTAGTGGCCTTGGATTCTTTGTTGGTGCTTGTTACCATgtgtatatatgaatatatattaaGTATAACTCTTCACTGTAGGTGTCCTCTGTCACAAAAATTGGGGTCTTTTGTGGGTTGGTTCACCACACTTCCATGTGCCCAGCTGGTTGGcatatgcacatacacacaaagtGAACAAGAGTTAGAATCAACAATTGATGTATTTGTTTTTCTATATTCATGTTGTCACCCTTCCAGCCCAATTCTTTTTTATTTGTTTCAATGTCATGTATTGCATTCCATACATTTTGTTGAAAAATGTCATCTAAAATGGTAATCCTATTGTAGCTCATTTATTTGTggtgtttattttatttggaACGGTAAAGATTGTCCACAATCACACCCATGCGTGATTATTTCTTAACGTTAGTGCTTCCTCCTCCCCAATTCAATGAACTTAATATGTCCTCAGGGTGTACAGTTCTATACGGGTATTTTAATGAATTATTTGAAGAAGAAGCAACGCAAGAAAACATGACTGGAATAGCAAAAAATTAATTAACCTAATTTTGTGACAACTGATAAACCAACATTGTTTTTGCAAGATTCTGTTATTTTTGGTCCTCTTTGTGACAATGGCGGTCTTGCTTACTGTCAACCCATTTGATTTCTGTTTgggttttgtttttcattttaatATTGTAGCTTTTGTCATTGCCACCATGCATCGGCGAGTGATGAGTCTATCAACAATTTATCTGTGTGAATTGAACTCTTCCCCATCTTAAATCCATGTTGCACCTGTGAACCCCACAGGTATAGCGATGACAACAAATGAATCTACCTCATAGCCAGTCCTCTGGCATCCACTAAGTCCCTCTACTCAGTCATTCACTCACTCAGACCCCAGCACATACATGGCCTTGTACTACTTTGCTACAAAAGCTCATGACTATGTATACTTTTCCCTTCCATGAGACCTTTGATTGTAAGGTTACTTGTCACTAGGGGGTGTGGTGAATGATTGGGCATATGTCTGAGGTCGACAGAAAAGGGCTCTTTTTATATATGATCTCGTCTTACCAGCTGTATAGATTGCATGCCTTCCTGCCACAGGTGAGTCTAGACAACCTGAGCCCTGTGCTTCTATTGAATACGTGTTAGACAGCATAGAGCTGGCAGCATAGTCCCCTCATTGATAGACATCTATGGCATTAAAAGGAAATGTGCTCAAGGAGGGATGAATATAGGAAAATACTAGCTGTGAGACAAAATGTGTCCCACTATTCTGTACAAGGATGTATTGCTGTTTTACTTACTAGGGAATTTTCATTTTTAGTATTAGCTAGATGAGGTCTTCTCGGAGGTAGTGTGTTCACTTGCGCTGTCCATGTATGAAGGACAGTGTAGTTGTAAATGGTCTGTGAGGTTGTGATACTGTTATGCAgctttgttgtctctgattgtgtTGACTGCACAAGACATGGAAGTCTGTATGCCTCTACTCTGCTGTCATCCAGTTTGTCTGCACTAGTAAAATGTCTAGATTGGATTAAATGTGAATCATATTTATTTGCTCTTTTACATTTTGTACATGTTTTAACTTGTTTTTAATATACATGTGATGTCTGGTTGTTTTAAGCAGTAGACATTTACCTCCGTAGCATGGCGGCATCAAAAAGGCCCCGTATGTTCCAGTTTTATGTTCACAAGTTTTTAAGACATAGATTATTTTGGAAATAGATAACGTATTTTCTATACTGTACATTTCTTAGAATAAATAACTTTTCCTGATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222974 lncRNA upstream 2610 85842017 ~ 85843259 (+) True G196990
TU222889 lncRNA upstream 67931 85775488 ~ 85777938 (+) True G196905
TU222859 lncRNA upstream 242379 85602573 ~ 85603490 (+) True G196877
TU222791 lncRNA upstream 343645 85501891 ~ 85502224 (+) True G196816
TU222766 lncRNA upstream 384341 85460837 ~ 85461528 (+) True G196791
TU223016 lncRNA downstream 49525 85950419 ~ 85950944 (+) True G197031
TU223027 lncRNA downstream 57272 85958166 ~ 85958565 (+) False G197036
TU223028 lncRNA downstream 57272 85958166 ~ 85961475 (+) True G197036
TU223030 lncRNA downstream 58908 85959802 ~ 85963597 (+) False G197037
TU223032 lncRNA downstream 59392 85960286 ~ 85963597 (+) True G197037
XM_021574820.2 mRNA upstream 9754 85831193 ~ 85836115 (+) True LOC110498193
XM_036957605.1 mRNA upstream 80838 85755625 ~ 85765031 (+) False bida
XM_021574806.2 mRNA upstream 80850 85755640 ~ 85765019 (+) True bida
XM_021574777.2 mRNA upstream 91658 85748761 ~ 85754211 (+) False wee2
XM_021574876.2 mRNA downstream 7803 85908697 ~ 85915458 (+) True LOC110498230
XM_036957703.1 mRNA downstream 115993 86016887 ~ 86034851 (+) False LOC110498298
XM_036957686.1 mRNA downstream 116003 86016897 ~ 86034847 (+) False LOC110498298
XM_021574933.2 mRNA downstream 116003 86016897 ~ 86036771 (+) False LOC110498298
XM_036957691.1 mRNA downstream 116007 86016901 ~ 86034848 (+) False LOC110498298
TU222039 other upstream 825835 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1245545 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2286271 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2720904 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 3191439 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 234722 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 1136617 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1249308 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1592729 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1635042 87535936 ~ 87536928 (+) True G198811

Expression Profile