RNA id: XM_021574876.2


Basic Information

Item Value
RNA id XM_021574876.2
length 2467
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110498230
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85908697 ~ 85915458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCCAGTCGGACATTTTCGAGTTTCCTATTTCCGATTAATACATGAACGCGGCATTACACTTTCAGGCTacggattttgttgttgtttttgtaacAGTTGTTGTTATAGTATAGAGCAGTATAGGAGTACCCATTCATCACTTCACTTTCACGGACAGGTTTGTTCAGTGCCTATCTATTCGGTGTTGACCAACATTGATTAGCCACACCTTCCCCATGTTGCACTGGCCAGAGAGCCACCAGGTGGCTATGGTGTCAGTCCTACTGTGCTGGTTGACCCTGTGCTGGTGCAGCCCTGACCCTAGGCTCAGAGAGTCTCTGATGCACCAGGAGGCCTCCCGGCAGACAGGGGGCAGACTGCTGCTGACAGAGGCAGAGCTGCGGCTCAGTGCACTGCTGCACAAACTGAAGGAGCAGGAGATGAAGAGCTCGGACTTCCCTCCTGCCTTGCACTTCTTCAAGGCAAAGCCACTCATCCAGCGCAGCCTCATCTACAGCCTACTGCAGAGGATGCCCAAAGGAGCAGCACTTCATGTCCATGACTTCTCCATGGTGGGAGTGGAGTGGCTGGTAAGGAATGTGACGTACCGGCCACATTGCTACATGTGCATTACAGAGGACCAGTCAGTTCGATTACTCTTCTCCTCTGGTCAGCCCAAACCAAAACCTCAGTGCTCTTCTTGGATGTTGCTGGAGACCCTGAGGGCCAAAACAGGCAATACCACTGACCTTGACAATAGCCTCATCCGCAACCTCACACTTTTCACTGAGGACCCAGAGGCTGCCTATCCCAGCCAAGATGTCGTTTGGAAAAGGTTTGAGCAGGCGTTCACTTCGGCTTGGGGACTAGTCACCTACGCTCCTGTATTCAAGGACTATTACTATGAGGGCCTGAGGCAGTTCTACATGGATAGTATCATGTATCTGGAGCTGAGGGCTTTGCTTCCAGAGACATACGAGCTGGATGGGAGCACACATGACAGTGCCTGGGGCCTCAAGACCTATCAGGACGTGACCAGGCAGTTTGTGTCAGAGCACCCAGACTTCCTGGGAGCTCGTGTCATCTTCACTGTGCACAGGCGGCTGAATGCGTCAATGGCATGGAAGGCAGTGGAGGAGGCTATGAACCTACAGAAAGTCTTTCCAGAGATCATGGCTGGATTTGACCTAGTGGGTCGGGAAGATAGTGGAAGACCCCTCTGGTACTTCAAGGAGGCCTTGTCTCTGCCAGGCGAGAGAGGAGTCAACCTTCCATTCTTCTTCCacgcaggagagactgATGAAGAGGGCACTGATGTGGATGGGAACCTACTGGATGCTTTACTGTTCAACACGTCTCGCATCGGCCATGGCTTTGCCCTGCTGCGCCACCCCGTGGCCAAGGCCCTCTCTAGGAGGAAAGGGGTGGCTGTAGAGGTGTGCCCCATCTCCAACCAGGTACTGAAACTGGTCTCAGACCTGCGGAATCACCCAGCAGCTGTTCTGATGTCAGAGGGCCATCCCCTGGTGATCAGTTCAGACGACCCTGCCATGTTTGGAGCTTCTGGCCTCTCCCATGATTTTTACGAGGCGTTTGTGGGTTTAGGTGGAATGAACTCTCACATAGGAACTCTCAAGGAACTGGCCATGAACTCCATCAGGTACAGCTCTCTGTCGCCACAGCTGAAGGAGAAAGCATTAGATTTGTGGCAGAGAAAATGGGACAAGTTTGTCTCAGAGAACTCACAATAGAGTCCTGCTGGAGCAGAGGAGTGGTCATTCGGATGCTAACTGTGACAGTGGGATCACCCCAGTCTGTGAGCCTGTTACTTGTGCCCCATAGGAAGGGAATGATATTTGGAAATGTTGTTCAAAATTCAGACAAGGGAAAGGATGTAGGTGTTATTGAAACATCATTTTTGGTATTTCCCTTTGCCTATGATGCTGTAGACAGTTTGGCAAATTAGGGTTGAGAAGGAAAAAGAGAACAAGTTCATATCGCCCTCACGTGGATAGGGTGTGTATAACACTCCTGTAAGAAATCAATCAGGAGACCACACTGCTGTCACCTCCTACAAAATGGAGGCCCCTGACAGAAGTTGAGTTCACTAGTCAAGGAGTCATGAAGGAAgcgtttttttttacacaaaggCATTTGATCATTATTATTTCAGTTGCAGAGAATTGTATTTGCACTGTAATTGTGAATTCAAGGAGACTCTACATGGTAATAGAGCACAGTGAGAAAAATATTACACCGAATGAACTGACCAGCTAGTCTTTAATAGCATTTTATGCTGGTAATGTGATTTTAATGGAGAACATGTGCATTTGTACAGATTTAATTAATTATACGGACACGTTATGACAAATGCATGCAGAACAGTAGGCAATGCCTTATTCATAGACACACTTTTCTATGAATACTTTTTTGATTGTATTTTTTTAGTTGTGAAATAGTTTTGAATTAAGGGAAGGAAAACATCA

Function

GO: NA

KEGG:

id description
K19572 CECR1, ADA2; adenosine deaminase CECR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222974 lncRNA upstream 65438 85842017 ~ 85843259 (+) True G196990
TU222889 lncRNA upstream 130759 85775488 ~ 85777938 (+) True G196905
TU222859 lncRNA upstream 305207 85602573 ~ 85603490 (+) True G196877
TU222791 lncRNA upstream 406473 85501891 ~ 85502224 (+) True G196816
TU222766 lncRNA upstream 447169 85460837 ~ 85461528 (+) True G196791
TU223016 lncRNA downstream 34961 85950419 ~ 85950944 (+) True G197031
TU223027 lncRNA downstream 42708 85958166 ~ 85958565 (+) False G197036
TU223028 lncRNA downstream 42708 85958166 ~ 85961475 (+) True G197036
TU223030 lncRNA downstream 44344 85959802 ~ 85963597 (+) False G197037
TU223032 lncRNA downstream 44828 85960286 ~ 85963597 (+) True G197037
XM_021574851.2 mRNA upstream 7803 85845868 ~ 85900894 (+) False LOC110498211
XM_021574842.2 mRNA upstream 7803 85845869 ~ 85900894 (+) True LOC110498211
XM_021574820.2 mRNA upstream 72582 85831193 ~ 85836115 (+) True LOC110498193
XM_036957605.1 mRNA upstream 143666 85755625 ~ 85765031 (+) False bida
XM_021574806.2 mRNA upstream 143678 85755640 ~ 85765019 (+) True bida
XM_036957703.1 mRNA downstream 101429 86016887 ~ 86034851 (+) False LOC110498298
XM_036957686.1 mRNA downstream 101439 86016897 ~ 86034847 (+) False LOC110498298
XM_021574933.2 mRNA downstream 101439 86016897 ~ 86036771 (+) False LOC110498298
XM_036957691.1 mRNA downstream 101443 86016901 ~ 86034848 (+) False LOC110498298
XM_036957697.1 mRNA downstream 109386 86024844 ~ 86034849 (+) True LOC110498298
TU222039 other upstream 888663 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1308373 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2349099 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2783732 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 3254267 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 220158 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 1122053 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1234744 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1578165 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1620478 87535936 ~ 87536928 (+) True G198811

Expression Profile