RNA id: XM_021574894.2


Basic Information

Item Value
RNA id XM_021574894.2
length 2710
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110498255
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85942497 ~ 85948458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCCCTCAGCAATTATCAATGATGTTCTACATCACATATCTGGTCTtaacatgtgtgtttgtgtaatcaTGCTTGTGTTTGTAGGCCTATATGATGTAGCCTAATTGTTTATGAATGTATGTTATCCATTCATGCTTTTGTATATGTACTATTGATATTTGTAAATCAAACAATGAAATCAAACCACAgccggccatgattacagacatctctgtgtcctttgacactatataaactagtgacccgcagtgtttgtcattataacCTGATGAAGACAGCGTGGCTGTTGAAATCTTGGTATTAAATTATTGTGCCTTTTCTTTGTAATGTGTTATGTTAACAGTTGATCTACCTTGTCAACTCTCCATAACTGTTAAGTGAATCAATGGTGATTTGCTTTCTTTTTTTATAGGCACATGTATTCTTTGTTGATTAGATAAGAAGTATTTTATGGCATTACATGGAGGGAGTTGTAACGTCTTTAGAGGGCATAGTTACTGAATCAATGTATATGACAAAGGGACATAACCAGGCTGGTTGTCGACAGGTAGCAATGAAGCTCAACGTCCTGCGAGGAGTGGGAATCACGTTTGGAGCCATTATTCCACTCATGTATATTGTCTATATGAAACAGGCAGTGAGTTCCACTTCCAATACAAAAAGGCTTCACGAAAAAGAGACTGCCAAGACTGTGCTGATGACGAGACTGGAGAGAATTGAAAAGAACCTCAACAAACTATCCGAATTAATAGAATCTAAATATCAGAAAGACCCCCCAACAAGGGAAGAAGTTGTGGTAACAGAGGCAAAGAAGATGGTGGTGCCCATGTTGTATCCCAACTCCTACCTGTTTACAAAGTGGGGTGATGACCTctcagaggaggagcagagagaggccGAGGCCCTGTTCCAGAGATATGGATACAACGTCTTCTTGAGTGACCAACTGCCACTCAACAGAGAGCTGCCAGATACACGAGACAACAGATGCTTGCAGAAGAAATACCCCAAGGACCTTCCTAGTATTGCTGTGGTATTGATCTACCTGGACGAGGCCCTGTCTATCATTAAACGGGCCATCCGCAGCATCATCGACCGAACCCCTGAACACCTGCTGAGAGAAATCATTCTGGTGGATGACCACAGCTCCAATGACCTGGGAGAAAAGCTAGCTGCCTACATAGAGCTCATCCACAAGGAAAGGCCGGGCCTTATAAAAAGGGTGAGACACAAGCAGCAGATGGGACTGACTCAAGCCCGCATCTCAGGGTGGGAGCACGCCACCGCTGATACAGTGGCCATTCTGGATGCCCACATTGAAGTCAACGTGGGGTGGGCAGAGCCACTGCTGGCCAGGATCAAAGCAGACAGGACCACTGTGGTGACTCCGGTGTTTGACAAGGTTGGTTTTGATGACCTGCAGGTGGAGCATTACTGGGCCAATGCACACGGTTTTGACTGGCCCCTGTGGTGCATGTACGAGTCCTTCAAACCAGAGTGGAACGAGCTCCATGATGAATCACAACCAGGGAAGAGTCCTTCTGTCATGGGTATTTTTGTGGCACATCGACTTTTCCTTGGAGAGATTGGGGTACTTGATGGTGGAATGAAAATCTATGGAGGAGAGAATGTTGAGCTGGGGATCAGGGTGTGGCTGTGTGGAGGAAGCATAGAGGTAGTGCCTTGTTCTAAGATCGCACACATTGAGAGGGCACACAAACCGTACGCACCTGACCTGAGTTACATCATGAGAAGGAATGCACTGAGGGTAGCTGCGATCTGGATGGATGACTACAAAAGTAATGTGAACATTGCTTGGAATCTTCCGTTGAAGGATCATGGGATTGATATCGGCGAtgtgtcagagaggaagaagctCAGAGAAAAGCTTGAATGTAAGCCCTTCAAGTGGTACCTGGATAACGTGTATCCTACACTGGCCACCTGGGAGGAGCTAGTGGCCTATGGAGGACTGCAGAATGACCTCCTGCAGAGCCATTGTATTGATGAGGGGACTGTCCCTGGGAATATACCCCTTCTTTATGGATGTCATTTCTATCAACCACAGCAATGTTATTACAACACTGATGGGGAGATCTACGTGGGTGGGATTAAGTCTCACAAGTACAACAACAACCGGTGTCTAGTGGATCCTGGCACTGGAAATATACCAACGCTGCATGATTGTAAACTGGCAGCGGAGAGAGGACTACACAAGCACTGGGACTTCCAACAGGGTCAAGCcatcaggaacacacacacaaatagatgTCTTGAGATTGCCCAGGGACAAAATTCATACTATATGCTGGTCATCCAACAATGCACTGGGCAAAACTGGAGAATTCAACATGTCATAAGAGAGTTCTAAAACACCCCCATGAACAAGTTGTTGGGGTCACATTCCTGAAATTCTAGATTTGACATTTGTGTTATCTATCATAACTGTTTCAAACAATATCTTGccaaaagaaaatacaaaattgATTTTATGCAGGGTATTGACAACAAACATCCAATGTAGACAATTGCTTTATTCTCTTTCTCTGAAAAACATGACACAAACAGACAGAATAAAAGATTGCATTGTAAAATAATCTTGTTGATGGTGGTTCTGATTATAAACTTTTAGCTACCAATGTGTACATAATAAACTAACATGTACCATGCACTGTATATtgaatgcatacacacaaaaatattttttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223543 lncRNA downstream 105810 85831239 ~ 85836687 (-) False G197498
TU223483 lncRNA downstream 188279 85752441 ~ 85754218 (-) True G197441
TU223460 lncRNA downstream 197093 85664173 ~ 85745404 (-) True G197424
TU223427 lncRNA downstream 257971 85640538 ~ 85684526 (-) True G197394
TU223358 lncRNA downstream 458872 85483027 ~ 85483625 (-) True G197328
TU223613 lncRNA upstream 78432 86026890 ~ 86043305 (-) True G197552
TU223683 lncRNA upstream 125815 86074273 ~ 86074839 (-) True G197613
TU223706 lncRNA upstream 160605 86109063 ~ 86109468 (-) True G197636
TU223707 lncRNA upstream 161394 86109852 ~ 86110146 (-) True G197637
TU223708 lncRNA upstream 161690 86110148 ~ 86110650 (-) True G197638
XM_021574863.2 mRNA downstream 15665 85920854 ~ 85926832 (-) True LOC110498224
XM_036957634.1 mRNA downstream 15667 85920854 ~ 85926830 (-) False LOC110498224
XM_021574882.2 mRNA downstream 21913 85915311 ~ 85920584 (-) False ribc2
XM_036957655.1 mRNA downstream 21913 85915311 ~ 85920584 (-) True ribc2
XR_005038578.1 mRNA downstream 22029 85915311 ~ 85920468 (-) False ribc2
XM_021574904.2 mRNA upstream 314 85948772 ~ 85952899 (-) True LOC110498273
XM_021574914.2 mRNA upstream 7050 85955508 ~ 85974164 (-) False dyrk4
XM_021574922.2 mRNA upstream 7050 85955508 ~ 85974164 (-) True dyrk4
XM_036957704.1 mRNA upstream 63700 86012158 ~ 86016392 (-) False LOC110498321
XM_036957707.1 mRNA upstream 63700 86012158 ~ 86016427 (-) False LOC110498321
TU223542 other downstream 99004 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 99004 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 99004 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 1302741 84609734 ~ 84639756 (-) True LOC110498022
TU221355 other downstream 1960330 83977965 ~ 83982167 (-) True G195486
TU223618 other upstream 11387 85959845 ~ 85963665 (-) True G197554
TU224521 other upstream 954578 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 1373681 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 3658379 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 4429099 90377557 ~ 90441425 (-) True G202279

Expression Profile