RNA id: XM_036957747.1


Basic Information

Item Value
RNA id XM_036957747.1
length 3782
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110498335
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86042800 ~ 86111227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTCTCTCCTCGCTCCATAGTATCCCTGAACGTCACAGCAGAGTCCCAAGTTCCTAAAAGTTGGGCAACGACTGAACATCAAGAATAGTGGACAAGTTGCTGCATAGATTTACGGGAGTTTTGTAGAAAAGGTTCTCTTCTTTCAGATCCAGAATGCTGAAGCCAGGATGGATCCTACAGGTCATCTGAGACGGTCCGCGTGTTCTCCCTGTTCTCCGTCTGCGACGGCCCCCTCATCCCCGAGCCTCGTCCCTCGGGGCCCCATCTGGCTCTCCGTCTTCCGGCAGCAGCCCCCAGTTGCGGAGTAGCAGTGGAAAGGCGACCCTGTAAATATGTCTGGATGGAGGTCTCAATGGCGTCTCGTCCTGCTGAACTCCCTGACCTGCGGCCTGGAGATTTGCGTGGCAGCTGGGATCACGTACGTTCCCCCCCTGTTGCTGGAGGCTGGGGTAGAGGAACAGTACATGACTATGGTACTAGGTATCGGCCCAGTGTTAGGTCTCATCTTCATCCCTCTGATTGGCTCAGCCAGTGACCACTGCAACAGCAGCTACGGCCGCCGCCGGCCCTTCATCTGGCTGCTGTCCCTGGGAGTCCTCTTAGCCCTCCTCATCATCCCCCATGCCGACCTGCTGGCTGCCTACTTCACCTGGGGCGGATGCGCCCTGCAGGTAGCCTTCCTCATCCTCGGTGTGGGCCTGCTCGACTTCTGTGGCCAGGTGTGCTTCACTCCGCTGGAGGCGCTCCTGTCTGACCTGTACCGCAATGAGGAGGACTGCAACCAGGCCTTTGCCATGTTCTCCTTTATGGTCAGCCTGGGAGGCTGTGTGGGCTACCTGCTGCCTGCGCTGGACTGGAGCCGGGGCCTGCTGTCAGTCTACCTGGGTGGCCAGGCAGAGTGCCTCTTCTTCATGCTCATCCTCATCTTCGTGACCAGCGTGCTGATCACCATGAGGGTGTCGGAGGAGCCGCCGTGCACCGCGGCCCTGGAGCCTGGTCCTCTCTTGGAGGCAGGTCGCTGTGGTGTGCCGCGCTCCTGCTGCTACCTGCTCAAGTCGATTCCGCTACTGTGCCTGCTGAGGACGTGCTGGTCCATGACTCCGGCCATCTACCGCAGCTACTGCCACGTGCCCCGGGTGATGAGGCAGCTGTGCATGGCCCAGCTCTGCAGCTGGATGGCCGTCATGTCCTTCATGCTCTTTTACACAGATTTTATGGGGGAGGGGCTGTACGAAGGCATGCCCAGCGCCGCCCCCGGGACCGCCTCCAGGCAGCGCTACGAGGATGGCATCCGTATGGGCAGCCTGGGCCTGTTCTTTCAGTGTGCTACCTCAACCGTCTTCTCCCTGCTCATGAGCCGACTGGTTCGCCATTTTGGCTCGCGCCAGGTCTACCTGAGCAGCATGGTGAGCTTCACCATCtctgccctggtcatatgtatGTCCAAGAGTGTGGTCCTGGTCAGCCTGATGTCAGCTCTGACAGGCTTTGCCTATGCCACGCTGCAGACGCTGCCCTACACCCTCACATGTCACTACCACAAGGAAATGGAGGTTTACATGCCAAATAAGAAAACCAAAAACATGCTTAAGAACGGGATTGCGGTCAAGCGGGACTCGATCACTCATTTGACAGCCATGGACGAGGAGGGGGGCCTGACCCACAAACTGGGGGACACCAAAGGGCATGCCATCTTCAGCCAGGAAGACTCAGACTACTACCCCCCTCCCCACGGCCAGAATGGATCGTCCCTCAGCGCCACAGCCCCCGAGCAGGAGGAACCGGAGGGCTACGAGAAGCGCGGTGTAGGGTTGGACTTTGCCATCCTGGACAgcaccttcctcctctctcagGTCTTTCCCACTCTTTTCATGGGCATGATTGTTCAATTCACAAAGTCCGTCACTGCCTATATGGCCTCCTCCGCCATCTTCGGCATCATCGCCATTTATCTGGCCAACCAGATCATCTTTGACCAAAAGGACCTCAATAGCTGAAAGATTCAGTAACCAGGAGTGAAGGAATGCACGACTGCTTCCAGCATGCAACACTCCAGTGTCATCGCTGGCCGTTGCTATGGCTTTACCAACACATTGCAATGAGGCAGCCTGTCTGTacgtttgtatgtatgtgtgctgCAGAATTAAAAGAAAATGTAAACCCGTGACAATTGTTACCTCCAGAGATTACTGCAGGCAGTTACTATGGCTACAAGAGAGAGACTGGCTGGCATTAGCTGGTctgttgacactgtctgtgtACTTAAGAGCGTTTCTCACCTTGTTCCCCTCAGTCACATAGAAGACCGCTCAGATAGGTACCTTCACCTTCTCCTCAGGTACAACTAGCTACACAGCTTGATCAGACTCCATCAGACCTTAGACAACTGAAATTATGTATTACCATTTTACTCTCATCTATGTGTGAAGTGGTGGAGTTTGTCAATGCTATATCTTTAAAATAGTCTGCTATTAGTCGAAGTCAACAGGAGATTATTGGTCAGTTCTCATGCAGACTGGCCGAGGAAGATAGGAACAAGTTAATCTGGAGAGCCCATTACCTGCTTGGGAAAGAatttctgtctgtttgttgttATCAGCCAGGTTGAAATATTGGGAATGTTAAGTGTCACTGGCCCCTAGTGTTGGATGTTTTTTGGGAATTAACAGGTTTAtcatatatattttgtatatgaATACAGTACATATATGTATATCCCTATGGGAATGTATTATGCGACCTGTTTGGTAGAGGTCATCTATGAGGTAATCTGTGTAACTGCATTGTTGTTAGGATGAAGTGGTTCAAAGCTTTCATTGGaatttctttctccctcttttcaAGAAATATCAGACAGTGCCATTTAGTGCCATTCATTACATAATCTCTACTGCCATTATCATCCCATGTTCAACCTCATGACAATCTAGGAAAGTAAATGAGGTGAATTATCCAACACTTTAAAAATCCAGGTACACTTATTTTCGGAACTCCATTAATATTCCCATGAGCAAAATACCAAAAAGTCATACTAGCAACACTGCAGTGATACTGTGAACTGGGTTCCTGAAAACAGTTTTGGTATGATGACagttctctgtgttctgttaaaTTTTTTATACTTTGCTCTGTGTaccataagtgtgtgtgtgtgtgtgtgtgtgcatgtgcgtgtgtgtgtgcgtgcgtgcgagagagagagaaaatttcAAAGTGCAAGTGTGAGTGCCGTGAAGAGAGCAGGGCAACATGGTATGACTTTGGATAAGTGCATTCTCTCCTCACCTAAGAGAATACTGCAGTCTTTCTATATCTCATCTGTTACTGTATATTTAAATAATAGTTTgcattttagcagacactcttacccaGAGTGACTTAAAGTAAGTAGTGAGTGAGTGCCTACATTTTCATTATCAAAATATAATAACCACACATCATTGCATAAATGGACTATTAAATTATGAGGTTGCTAAATACAGTTGGCACTattggatatacagtgcattcggaaagtattcagacccttgactttttccacattttgttacgttacatccttattctaaaattgattgaattgttTTTTCCTCTCATCAACGTAACAcgtaataccccataatgacaaagaaaaaacgtTTTTTTCGAAATTTTGAAAACGTATTAAgaatattttttacaaatgtaaatatcacattaacataagtattcagccccttaactcagtactttgttgaagcatatttggcagtgattacagccttgagtcttcttgggtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223038 lncRNA upstream 73577 85968813 ~ 85969223 (+) True G197043
TU223030 lncRNA upstream 79203 85959802 ~ 85963597 (+) False G197037
TU223032 lncRNA upstream 79203 85960286 ~ 85963597 (+) True G197037
TU223028 lncRNA upstream 81325 85958166 ~ 85961475 (+) True G197036
TU223027 lncRNA upstream 84235 85958166 ~ 85958565 (+) False G197036
TU223070 lncRNA downstream 1773 86113000 ~ 86113167 (+) True G197072
TU223069 lncRNA downstream 3978 86115205 ~ 86120676 (+) True LOC110498346
TU223068 lncRNA downstream 23874 86135101 ~ 86135427 (+) True G197070
TU223063 lncRNA downstream 30233 86141460 ~ 86146225 (+) True G197065
TU223166 lncRNA downstream 53982 86165209 ~ 86181488 (+) True G197156
XM_021574933.2 mRNA upstream 6029 86016897 ~ 86036771 (+) False LOC110498298
XM_036957703.1 mRNA upstream 7949 86016887 ~ 86034851 (+) False LOC110498298
XM_036957697.1 mRNA upstream 7951 86024844 ~ 86034849 (+) True LOC110498298
XM_036957691.1 mRNA upstream 7952 86016901 ~ 86034848 (+) False LOC110498298
XM_036957686.1 mRNA upstream 7953 86016897 ~ 86034847 (+) False LOC110498298
XM_036957762.1 mRNA downstream 3398 86114625 ~ 86120626 (+) False LOC110498346
XM_021574974.2 mRNA downstream 3414 86114641 ~ 86121138 (+) False LOC110498346
XM_021574980.2 mRNA downstream 13531 86124758 ~ 86131460 (+) False LOC110498357
XM_021574985.2 mRNA downstream 14113 86125340 ~ 86131467 (+) True LOC110498357
XM_021575047.2 mRNA downstream 312483 86423710 ~ 86470667 (+) False LOC110498407
TU222039 other upstream 1022766 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1442476 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2483202 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2917835 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 3388370 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 24389 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 926284 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1038975 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1382396 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1424709 87535936 ~ 87536928 (+) True G198811

Expression Profile