RNA id: XM_021575047.2


Basic Information

Item Value
RNA id XM_021575047.2
length 2440
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110498407
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86423710 ~ 86477838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGACGTTCTAGACTGAGTGGTCATTTTTTTGTCTTCTGAAACGTTTCCGTAATTTATCGTTTCGCATTCGGCTTTTTGAGTGTGTGGTGGACATAGTCCCCGCCCAACTTTCTGCCTGCGTTGTTTGGGGACACTATGAAGATGGCGGCAGCCTCGCTGTATTGTGTCTGCCAGCAGTCGTATGATGTTAGCCGGTTTATGATTGAATGCGACATTTGTAAGGACTGGTTTCATGGCAGCTGTGTCCAAGTGGAAGAGCACCATGCCGTCGACATTGATGTTTACCACTGTCCCAACTGTGATGTCCAACACGGACCATGCTTGATGAAAAAGCGTATCAACTGGCACCGGCACGACTACACAGAGCCTGACGATGGCAGCAGGCTGGTGCAGGCGGGGACCTCTGTGTTTGTACGAGAGCTGCAGAACAGGCCCTTTCCCAGTGCGGCTGAGATCCTGGTGCAGATGCAGGGGCATCAGGTAACACAGAAGTACCTGGAGAAGCAGGGCTTCAGCTACCCCATCGCCGTTCCCCAACTAGGCGGACTGGGTCTCAAGCTGCCCCCCTCCAGCTTCTCTGTCAGGGATGTGGAGGAGTATGTTGGTGGTGACAAAATCGTGGATGTCATTGATGTtgccagacaggcagacagcaaaATGAAGCTTCGAGAGTTTGTCAAGTATTACTACAAACCTCATCGGCCAAAGGTGCTGAACGTGATCAGTCTGGAGTTTTCAGACACCAAGATGGCAGAGCTGGTGGTGGTGCCTGATATTGCTCAGAAGATGTCCTGGGTGGAGAACTACTGGCCAGAGGACTCCTTCTTCCCCAAGCCCTTTGTTCAGAAGTACTGCCTGATGGGGGTGAAGGACAGCTACACAGACTTCCACATAGACTTTGGAGGCACATCTGTGTGGTACCATGTACTCTGGGGAGAGAAGATTTTCTACTTGATCAAACCGACCCAGGATAATCTTACACTATACGAGGTGTGGAGTTCGTCCCCCAACCAGAGCGAGGTGTTCTTCGGGGACAAGGTGGACCAGTGCTACAAGTGTGTGGTGCCGCAGGGAACCACCGTCCTCATCCCCACAGGATGGATCCATGCTGTTCTCACCTCTCAAGATTGCATGGCGTTCGGTGGGAACTTTCTCCACAACCTCAACATAGGCATGCAGCTCAGGTGTTATGAAATGGAGTGGCGGTTAAAGACTCCGGACCTCTTCAAATTCCCTTACTTTGAGGCAATCTGCTGGTACGTGGCCAATAATCTACTGGAGACTCTAAAAGAGTTACGAGAGGATAACTGCCAGCCCCCAGTCTACCTAACAGATGGAGTGAAAGCCTTGATTAATGCACTGAAAAACTGGCTGAAACGAGAGgTCACAGAGCAGGCCAGCGATGTCCCGGACCATATCAGACCCAACCATCTGATTAAAGAACTCACAAAGGAAATCCGCTACCTGGAGgaggaggaggagcagagtggAGGTAGCAAGCCAGTGAAATCTCAGGGATGTGGACCGTGCCCACTGACGCGGTCAACTCTTGACAAGGCTGGACATCATGCTCGCAGGACAGCCAGACGGCTACGGcacaaccaccaccatcatcaccatcatcaccatgcgCCCAAGACCCCCTCCAACCTGGAGATCCTGGAGCTGCACACACGACAAGTGCTCATGAGGCTGGAGGTGGGACCCTTTGAGGAGGATGTTCCATTCAGCTCCACGGTGATGGCGAAGTTCAACAAGATGTCCATGGCGTCTGCTGCAGCGGTGGAGAGGAGCCTGGACAACAACCTCCTTCTGGTGATGTGCAATGGCAGGATTATTAGaGATGAGCGTCGTCACACAAGTGTGAAGAGTAGTCCGGTGCGGGACGGTAAAAGGACTGGCGGCCACCAGAGGGAAAGGGTCCTGGTGAAGACCGAGCTCAATGACAGCAAGCTGGAACAGCACCAAGAccacgagagagaggagaaaccCAGCCCCCTCAGCAGTGAGTCTAACTGGTCAAGTCACCAGCTGTCAATCAACGGTTTAGACTTTTTCGAAAGAGTGAATTCCGATCTCAGGAAAGGAGCCGTAGTGTACTCCGACATTTCAGACTCTGAGTCCGAAGAACGTTGCTCTTTGCAGAAAAAGGACTCCTCGGGGGAAGATTCGGGGAGCtccgaggaggaggagaaaagagaggataAGGAGCATTGCAGGATGGCGCGAGGCAGTGTGAAGGACCTACACCAGGCCAGCCAGGCCCTTCACCACTTTCACGAACCACTCAAAGGGTACAGGAAGCATGGATGAATGGACCAAGTGGCGTTCTTGTTCTAAGCATTCTACAACGCCCTACCTCTCCAACCACAGAAGAGGAGGCTATTGAGGGCATGCTGTCCATGGCAGGGCTGCTTTATCCACAGCGACCAGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223257 lncRNA upstream 105731 86317641 ~ 86317979 (+) True G197244
TU223231 lncRNA upstream 147018 86276210 ~ 86276692 (+) True G197218
TU223229 lncRNA upstream 152218 86270822 ~ 86271492 (+) True G197216
TU223219 lncRNA upstream 166344 86257120 ~ 86257366 (+) True G197207
TU223218 lncRNA upstream 166766 86256566 ~ 86256944 (+) True G197206
TU223328 lncRNA downstream 56520 86527187 ~ 86527409 (+) True G197303
TU223329 lncRNA downstream 56847 86527514 ~ 86527789 (+) True G197304
TU223330 lncRNA downstream 59675 86530342 ~ 86530709 (+) True G197305
TU223332 lncRNA downstream 61622 86532289 ~ 86532489 (+) True G197307
TU223339 lncRNA downstream 79801 86550468 ~ 86550873 (+) True G197314
XM_021574985.2 mRNA upstream 292243 86125340 ~ 86131467 (+) True LOC110498357
XM_021574980.2 mRNA upstream 292250 86124758 ~ 86131460 (+) False LOC110498357
XM_021574974.2 mRNA upstream 302572 86114641 ~ 86121138 (+) False LOC110498346
XM_036957762.1 mRNA upstream 303084 86114625 ~ 86120626 (+) False LOC110498346
XM_036957747.1 mRNA upstream 312483 86042800 ~ 86111227 (+) False LOC110498335
XM_021575058.2 mRNA downstream 10608 86481275 ~ 86520602 (+) False LOC110498438
XM_021575066.2 mRNA downstream 10608 86481275 ~ 86520602 (+) False LOC110498438
XM_021575072.2 mRNA downstream 10608 86481275 ~ 86520602 (+) False LOC110498438
XM_021575078.2 mRNA downstream 10608 86481275 ~ 86520602 (+) False LOC110498438
XM_021575085.2 mRNA downstream 10608 86481275 ~ 86520602 (+) False LOC110498438
TU223067 other upstream 287102 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1403676 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1823386 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2864112 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3298745 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 566844 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 679535 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1022956 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1065269 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1396210 87866877 ~ 87867967 (+) True G199223

Expression Profile