RNA id: XM_021575151.2


Basic Information

Item Value
RNA id XM_021575151.2
length 8332
RNA type mRNA
GC content 0.53
exon number 48
gene id LOC110498438
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86481275 ~ 86520602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTGACGCGAGCCCGGGCTCGAGCACTAAAGTGAAAACTGCACTGTGTGCGCGCGGGGATGATAGTCGccattttattttgaaaaatcaAACCGAACTGGAAGGAGAGCAACCAAAAAGGAATGAATATCACAAATACATTTTGGGAACCATGATTCTGAACTTGATGTTGCACTGAGGGACTTTACCTTGTATCAAGATCCACTGATAGAAGTAGCTTGCTGTAAAACATTTtcacacctgggggggggggggggggggcgggggcggGGGCAGAAGTATCCTATCACTGAAGTGACTTAAGGGGAATAATGGTGATTTTGCGCCGGGCACGGCCGCCTGCTTCCGCCCCAACCAGCAATGAATCTTGACTCGCTCTCGCTGGCTTTGTCTCAAATCAGCTACTTGGTGGACAATTTAACTAAGAAAAACTACAGAGCCAGCCAGCAGGATATACAACATATAGTGAATCGTCACGGCCCTGAGGCAGACAGGCATTTGTTACGCTGTCTTTTCTCCCATGTGGATTTCAGTGGCGATGGTAAAAGCAGTGGCAAAGATTTCCATCAGACACAGTTTCTGATCCAGGAGTGTGTTTCACTGATTTCAAAGCCAAATTTTATTTCAACACTCTGCTACACAATCGACAATCCCTTGCACTACCAGAAGAGTTTGAAGCCTTCCACCCACTTGTTTACTCAGTTGAGTAAAGTTCTCAAGTTAAGCAAGGTTCAAGAAGTTATATTTGGCCTTGCTTTGCTGAATTCGTGCAACGCAGACCTTCGTGGTTTTGCCGCGCAGTTCGTCAAACAAAGGCTCCCGGACCTCCTCCGCTCGTACGTGGACGCGGACCTTGGAGGAAACCAGGAAGGTGGCTTCCAAGATATTGCCATAGAGGTCCTGCACCTgctcctctctcatcttcttttTGGACAGAAGGGAGCCAGCGGGGTCGGACAAGAGCAGATTGACGCGTTCCTCAAGACACTGTGCAGAGATTTCCCGCAGGAGCGCTGCCCTGTGGTGCTCGCACCACTTCTATACCCTGAAAAACGGGACATTCTGATGGACAGGATTCTGCCAGACTCGGGAGAGTTAGCCAAGACCATGATGGAGAGTTCTCTCGCAGAGTTCATGCAGGAAGTTGGCTATGGCTTTTGTGCAAGCCTCGATGAATGCCGCAACATAATCCTACAGTATGGGGTGCGAGAGGTTACTGCCAGCCAGGTGGCCAGGGTCCTGGGGATGATGGCTCGCACCCACTCTGGCTTGTCTGATGGAATCCCCCTACAGTCCATCTCGGCTCCGGGCAGTGGCATTTGGAGCGATGGAAAGGACAAAAGTGATGGCTCTCAGGCGCACACCTGGAATGTAGAAGTTCTAATTGATGTGGTCAAAGAAGTTAACCCCAATCTGAACTTTAAAGAGGTGACCTATGAGCTTGACCACCCTGGCTTCATAATCCGGGACAGCAAGGGACTGCAGATGGTGGTGTATGGGATCCAGAGGGGCCTGGGCATGGAGGTGTTCCCGGTCGACCTAATCTACCGGCCCTGGAAGCATGCTGAAGGACAGCTGTCATTCATCCAGCACTCCCTCATGAGCCCAGATGTGTTCTGCTTTGCTGACTACCCCTGCCACACCGTAGCAATTGACATACTGAAGGCCCCACCTGAGGACGATAATCGAGAGATAGCCACCTGGAAGAGCCTGGACCTGGTGGAAAGCCTCCTGCGCCTCTCTGAGGTGGGCCAGTACGAGCAGGTAAAGCAGCTCTTCAGCTTCCCCATCAAGCACTGTCCTGACATGCTGGTGCTGGCGCTGCTGCAGATAAGCACCTCCTGGCACACCCTGCGCCACGAGCTCATCTCCACCCTCATGCCAATCTTCCTGGGCAACCACCCCAACTCTGCTATCATCTTACACTACGCCTGGCATGGACAGGGCCAGTCCCCCTCTATCCGTCAGCTGATCATGCACTCTATGGCTGAGTGGTACATGAGAGGGGAGCAGTACGACCAGGCAAAGCTGTCCCGCATCCTGGATGTGGCCCAGGActtgaagtctctatcTATGCTGCTTAATGGTACTCCATTTGCCTTCGTTATCGACCTTGCTGCACTTGCCTCTCGCCGTGAATACCTCAAACTTGACAAATGGCTGACTGACAAAATCCGAGAGCATGGGGTGAGTGGTGAGCCCTTCATCCAGGCGTGTGTTACGTTCCTGAAGAGACGTTGTCCCTCTATCATTGGTGGTCTGGCCCTAGAAAAAGACCAACCCAAAAGCGCCCTCCTTCCCCCTGAAACGATGGCTACCATGCTGGGTTGTCTGCAGTCCTGTGCAGGGAGCGTCACTCAAGAGCTCTCCGAGACGATCTTGACCATGGCTGCCAACTGTAGCAACGTCATGAACAAAGCCCGCCAGCCGCCACCAGGAGTCATGCCAAAGGGCCGTGCTCCCAGCACCAGCAGCCTAGATGCAATTTCCCCTGTGCAAGTGTCGGTGTCTCCTCTCCAGATGGATCCCCTGACAGCCATGGGCTCCCTCAACCTGGGCAGCTCTGCCACCTCTCACACACAGAGTATGCAGGGCTTTCCCACCCCGCTGGGCTCTGCTTTCAGCAACCCCCAGTCCCCAGCTAAGGCCTTCCCTCCACTGTCCAACCCCAGCACACCATTTGGGGGGATTGGAAGTCTCTCTTCACAGCTAGGTAACCCAGGTCCGCTGGGATCAGGCATTGGCTCTGGTATTGGTTCTGGTCTTGGAATGCCAGCGGTGAGCAGTGATCCGTTTGGGACGAGGAAGATGAGCACACCAGGCCTGAATCCGCCCACCTTTCAGCAGAGTAAGATGGCCTCTGACCTATCTCAGGTGTGGCCAGAGGCTAACCAGCACTTTAGTAAGGAGATTGACGATGAGGCTAACAGCTACTTCCAGCGCATCTACAACCACCCCCCACACCCCACCATGTCTGTGGATGAGGTACTGGAGATGCTGCAGAGGTTCAAGGACTCCACCATCAAGCGAGAGCGTGAGGTCTTTAACTGTATGTTGAGGAACTTGTTTGAGGAGTACCGCTTCTTCCCCCAGTACCCTGACAAGGAGCTACACATCACCGCCTGCCTGTTCGGGGGGATCATTGAGAAAGGCCTTGTCACCTACATGGCCCTCGGACTGGCCCTTCGATATGTACTCGAAGCCTTGAGGAAGCCATTTGGGTCCAAAATGTATTACTTTGGGATCGCTGCTCTAGATAGATTCAAAAATAGACTGAAGGACTATCCCCAATATTGTCAGCACTTGGCCTCAATCGGCCACTTTCTGCAATTCCCCCATCATTTACAAGAGTGCGTGCAGTATATCGAGTATGGCCAACAGTCACGGGACCCTCCGGTGAAGATGCAGGGATCCATCACCACCCCAGGAAGCCTGGCGTTGGCTCAAGCTCAGGCCTTGTCTCAGCCTCCCAAAGCCCCCCAGCCTGGACAGCCGCCCAGCACCCTGGTCACCAcagctaccaccaccaccactgtcgCCAAAACCACTACCATCACCCGGCCTACCCCTGGCAGCTTCAAGAAGGATGTGCCGCCCTCCATCAACACTACAAACATCGACACACTTCTAGTAGCAACAGACCAAACCGAGGGGATTGTGGAACCCCCAGAAAATGTTCAAGAGAAAATTGCTTTCATCTTCAATAACCTGTCACAATCCAACATGACACAGAAGGTTGAGGAGTTAAAGGAGACTGTCAAAGAGGAGTTCATGCCCTGGGTCTCTCAGTATCTGGTCATGAAGAGGGTCAGCATTGAGCCCAACTTCCACAGCCTGTATTCCAACTTCTTGGACACCCTGAAGAACCCAGAGTTTGTCAAAATGGCCCTGAATGAAACTTACAGAAACATCAAGGTTCTCCTTACCTCTGATAAGGCAGCTGCAAACTTCTCTGATCGATCCCTACTGAAGAATTTGGGTCACTGGCTTGGTATGATCACTCTGGCTAAAAACAAGCCCATCCTGTACACAGATTTGGAGGTGAAATCCCTGTTGTTGGAAGCGTATGTCAAGGGGCAGCAGGAGCTACTCTATGTGGTCCCGTTTGTGGCCAAAGTCCTGGAATCCAGTTTACGTAGCGTGATTTTCCGACCCCAGAATCCCTGGACGATGGCCATCATGAATGTTCTGGCTGAGCTGCATACGGAGCATGATCTCAAGCTGAATTTGAAGTTTGAGATTGAAGTGCTGTGTAAGAACTTATCATTGGACATCAATGACCTGAAGCCTGGCACCCTTCTGAAGGACAAAGACCAGTTGAAGAGACTGGAGGAACAGCTCTCTGCACCAAAGAAAGAGGCCAAGCCCCCTGAAGAAATGCTCCCTGTTGTTAGCACAGGTATCCAGCACTTTCAAATTGGGATGCCCATTGTCGGAGACTTTCTTCCATTTGCAGCTGCGCCATCCACTCCTGCCGCAACCACCACTTGCTCAGCTACTGGTCCCCCTACCCCACAGTTTAGCTATCATGACATCAATGTGTACGCGCTTGCAGGGCTAGCCCCTCACATCAATATCAACATCAATATCCCCTTGCTCCAAGCCCACCCTCAGCTGAAGCAGTGTGTGAGACAGTCCATTGAGCGGGCCGTGCAGGAGCTCGTCCACCCTGTGGTGGACCGTTCCATCAAGATCGCCATGACTACCTGCGAGCAGATTGTCAGGAAGGACTTTGCCCTGGACTCCGAGGAGTCGCGCATGCGTGTGGCTGCCCATCACATGATGCGTAACCTGACCGCCGGCATGGCCATGATCACCTGCCGGGAGCCCCTGCTCATGAGTATCGCTACCAACCTGAAGAACAGCTTTGCCGCAGCCCTCAGGGCCCCCACCCCCCAGcagagagagatgatggaggaGGCTGCTGCTAGGGTTGCCCAGGACAACTGTGAGCTGGCCTGCTGCTTCATCCAGaagactgcagtggagaaggctGGCCCAGAGATGGACAAGAGACTAGCCACGGAGTTTGAGCTGAGGAAGCACGCCCGTCAGGAGGGTCGTCGCTACTGCGACCCTGTGGTGCTGACCTACCAGGCAGAGCGCATGCCAGAGCAGATCAGACTCAAGGTTGGAGGAGTAGACCCCAAACAGCTGGCGGTGTACGAGGAGTTTGCCAGGAATGTTCCAGGCTTCCTACCCAGCAACGACCTGTCTCAGCCCACTGGATTCCTTGCCCAGCCCATGAAGcaacaagCATGGGCCACAGACGATGTGGCTCAGATTTATGACAAGTGCATGGCTGACCTGGAGCAGCACCTCCATGCCATCCCCCCAGCGCTGGCCATGAACCCCCAGACTCAAGCCCTGCGCAGTCTGCTGGAGGCAGTGGCCCTGGCCAGGAACTCCCGGGATGGCATTGCTGCTCTGGGCCTGCTGCAGAAGGCTGTGGAGGGTCTGCTCGATGCCACCAGTGGTGCCGATGCTGACCTGCTCCTGCGGTACAGAGAGTGTCACCTGCTGGTGCTAAAAGCCCTCCAGGACGGCCGGGCATACGGACCACAATGGtgcaacaaacagattaccagGTGCCTGATTGAGTGCCGTGATGAGTACAAGTACAATGTGGAGGCTGTGGAGCTGCTGATCAGAAACCACCTGGTCAACATGCAGCAGTACGACCTGCACCTGGCACAGTCTATGGAGAACGGTCTGCACTACATGGCAGTGGCATTTGCCATGCAGCTGGTAAAGCTGCTGCTGGTGGATGAGCGCAGTGTGAGCCACATCACAGAGGCCGATCTGTTCCATACCATCGAGACTCTGATGAGAACCAGCGCACACTCCAGGGCCAATGCACCCGAGGGGCTTCCTCAGCTGATGGATGTGGTCCGCTCTAACTACGAGGCCATGATCGACCGGGCCCATGGAGGACCCAACTTTATGATGCACTCTGGCATCTCCCAAGCGTCTGAGTACGACGACCCGCCGGGCCTGAGGGAGAAGGCGGAGTACTTGCTAAGGGAATGGGTCAACCTGTACCACTCTGCAGCCGCCGGCCGGGACAGCACCAAGGCCTTTTCTGCTTTTGTGGGCCAGATGCACCAGCAGGGCATTCTGAAGACCGATGACCTGATCACGCGTTTCTTCCGGCTGTGCACAGAGATGTGTGTGGAGATCAGCTACCGCGCCCAGGCCGAGCAGCAGCACAATCCTGCGGCCAGTGCCGCCATCATCAGAGCCAAGTGCTACCACAACCTGGATGCCTTTGTTCGCCTCATCGCTCTGCTGGTCAAGCACTCTGGAGAGGCCACCAACACAGTCACCAAGATCAACCTGCTCAACAAGGTTCTAGGTATTGTGGTTGGAGTGCTGATCCAGGACCATGATGTAAGACAGACAGAGTTTCAGCAGTTGCCTTACCACCGCATCTTCATCATGCTGCTGCTTGAGCTCAATGCCCCCGAGCATGTGCTGGAGACCATCAACTTCCAGACCCTCACCGCCTTCTGCAACACTTTCCACATCCTGAGGCCTACCAAAGCTCCTGGCTTTGTCTACGCTTGGCTGGAGTTGATCTCTCACCGGATCTTCATCGCCAGGATGCTGGCACACACCCCACAGCAGAAGGGTTGGCCCATGTATGCCCAGCTGCTCATTGATCTTTTCAAATACCTAGCGCCCTTCCTGAGGAATGTTGAGCTCAACAAACCTATGCAAATCCTCTACAAGGGTACCCTGCGTGTCCTgcttgtcttgctgcatgacttCCCAGAGTTCCTGTGTGACTACCACTATGGCTTCTGTGATGTCATCCCGCCCAACTGCATCCAGCTCCGCAACCTGATCCTGAGTGCCTTCCCACGCAATATGAGACTTCCAGACCCCTTCACTCCCAATCTGAAGGTTGACATGCTCAGCGAGATCAACATTGCTCCACGCATCCTCACTAACTTTACCGGAGTGATGCCCTCTCAGTTCAAGAAGGATCTGGACTCGTACCTGAAGACGCGCTCCCCTGTCACCTTCCTCTCTGAGCTCCGCAGCAATCTGCAGGTGTCAAATGAGCCAGGCAATCGTTACAACATCCAGCTGATCAATGCACTGGTGCTGTATGTGGGGACCCAGGCCATCGCACACATCCACAACAAGGGCAGCACTCCCTCCATGAGCACCATCACTCACTCAGCCCACATGGACATCTTCCAGAACCTGGCTGTGGACCTGGACACTgaggGGCGCTATCTCTTCCTGAATGCGATTGCTAATCAGCTGCGCTACCCAAACAGCCACACCCATTACTTTAGCTGCACCATGCTCTACCTGTTTGCTGAGGCCAACACGGAGGCAATCCAGGAGCAGATCACCAGGGTTCTTCTGGAGAGGCTTATTGTGAACAGGCCTCACCCCTGGGGACTGCTCATCACGTTCATCGAGCTCATCAAGAACCCTGCCTTCAAGTTCTGGAGCCACGACTTTGTGCACTGTGCCCCAGAGATCGAAAAgttgtTCCAGTCAGTGGCTCAGTGCTGCATGGGGCAAAAGCAGGCTCAGCAGGTGATGGAGGGCACTGGTGCCAGTTAGTCAGCCTGCAGGAGAGATGCTAGGGCCAAACCCTCCATCCCTGGACCCACCCCACAgatgccccccccacccccctcccccacattACTGTTAGCACTGGATGAACTGGAAACGCTGATTTGAAGTTTAAGGACTGCTGCTCatggatcttttttttttttttttggcctgGATATGGCCTGGAGTTGAATGCTGTTTAATATAATTTTGATGTAAATATTAAAAGGGAGAGAGCTCCATGTCTGAAAGGAGTGTCCAACAAATTATCTAACATGTAAAGATGACGTGTacagacacacattcactcaCTACCAAAGCCCTGTTTTGTCTCCCTCCTACATTGTTTTACATATTTCTTGACTGATTTATTTGCGTTGAGGCTTAATGGATAGTGGATTTAATAAAAAGCAGCCTAATTTGATTTGAGTGGGAAGAAAGGTTCTCCTGGGTTCACTCCTTTATCTGCTTGGGGTGTGGTGGGGGTCAATGGTCTTTCCATTTTAAAGTGGGTTAGGTTCTCCCCGGCACTTGGAAAATTTGAGATGACTAATTGAACCTTAATTTGTACAAAGATCCAAATTGTGGACCAATACAGCCCATTTTGTAAGGATTTTGAATGTTTTGTAAATGTATTGGTCCGTGTGTATTTTGTAATTCTTTTAGTTCTTGCTACTTATTTCCTGTATGTATGCATACTGTAGTTAACTCATTAAACAATTCAACTGCATTTGTTTCCCTCAGTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223257 lncRNA upstream 163296 86317641 ~ 86317979 (+) True G197244
TU223231 lncRNA upstream 204583 86276210 ~ 86276692 (+) True G197218
TU223229 lncRNA upstream 209783 86270822 ~ 86271492 (+) True G197216
TU223219 lncRNA upstream 223909 86257120 ~ 86257366 (+) True G197207
TU223218 lncRNA upstream 224331 86256566 ~ 86256944 (+) True G197206
TU223328 lncRNA downstream 6585 86527187 ~ 86527409 (+) True G197303
TU223329 lncRNA downstream 6912 86527514 ~ 86527789 (+) True G197304
TU223330 lncRNA downstream 9740 86530342 ~ 86530709 (+) True G197305
TU223332 lncRNA downstream 11687 86532289 ~ 86532489 (+) True G197307
TU223339 lncRNA downstream 29866 86550468 ~ 86550873 (+) True G197314
XM_021575039.2 mRNA upstream 3437 86423717 ~ 86477838 (+) False LOC110498407
XM_021575025.2 mRNA upstream 3437 86423720 ~ 86477838 (+) False LOC110498407
XM_021575031.2 mRNA upstream 3437 86423722 ~ 86477838 (+) True LOC110498407
XM_021575047.2 mRNA upstream 10608 86423710 ~ 86470667 (+) False LOC110498407
XM_021574985.2 mRNA upstream 349808 86125340 ~ 86131467 (+) True LOC110498357
XM_021575240.2 mRNA downstream 34873 86555475 ~ 86564249 (+) True LOC110498585
XM_021575248.2 mRNA downstream 52967 86573569 ~ 86624542 (+) False LOC110498595
XM_021575254.2 mRNA downstream 90427 86611029 ~ 86624542 (+) True LOC110498595
trnag-gcc-2 mRNA downstream 199014 86719616 ~ 86719686 (+) True trnag-gcc-2
trnag-gcc-3 mRNA downstream 199767 86720369 ~ 86720439 (+) True trnag-gcc-3
TU223067 other upstream 344667 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1461241 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1880951 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2921677 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3356310 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 516909 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 629600 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 973021 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1015334 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1346275 87866877 ~ 87867967 (+) True G199223

Expression Profile