RNA id: XM_021575232.2


Basic Information

Item Value
RNA id XM_021575232.2
length 2250
RNA type mRNA
GC content 0.47
exon number 9
gene id setd6
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86520022 ~ 86526770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGACATGACGTCAAAGATGCGACACACGTGGTTTGCGGAAATGAACACATACCAATAGCACAGAGGGCAGCGACCCTCTCCAGAGCTTCCTACAGTGGTGTGAAGGAGTGGGGCTGAAACTCAACAACAAGGTGTACATCAGCAATGAGGGCACAGTGGCAGAGTATGGCATGCTGGCTAAGGAGGACATAGATGAAGGAGAGTTGCTCTTTACTATACCCAGAATGGCTCTTCTGCACCAAGGCACCACCAAGGTCCTGGCTGTGCTGGAGGAGGGTAAAGCATCTTTGGAGAACACGTCTGGATGGGTGCCCCTCCTCCTGGCACTGATGTATGAGTACACATCTCCCCAGTCCCACTGGAGGCCTTACCTATCCCTCTGGTCTGACTTCACAGCTCTGGATCACCCCATGTTCTGGTCAAAGGATGAGCGGGACAGACTCCTGAAGGGGACAGGGATCCCAGAGGCGGTGGATACTGACCTCACCAACATCCAGAAAGAGTACAAAGACATCGTCCTACCTTTCATTACGTTACACCCTGACCTGTGGGACCCAGAGAGACATACACTGGACCTCTACAGAAGCCTGGTGGCTTTTGTCATGGCTTACAGTTTCCAGGAGCCCctggatgaggaggatgaggatgagaaGGACCCCAATCCTCCCATGATGGTGCCCATTGCGGACATGTTGAACCATGTGTCAAATCACAACGCCAATCTGGAATACACACCCGAGTGTTTGAAGATGGTGTCAGTGCGAAGTATCCGGAAAGGAGAGGAAGTGTTCAACACATATGGTCAGATGGCCAACTGGCAGCTCCTACACATGTATGGCTTTGCCGAGCCATATCAAAGTAATAGCAACGACACGGCAGACATACCCATGTCCAATGTATACAAAGCAGCTGTGCAAGTGACTCGGTCTGAAGCCGAACAGCGCCTCCTTGTGgagaagtggagtcttttgtgtGAGATGGAGATGGTTGGAGACAAGGGAGTGTTTATCTTTGGAAAGTCAGGGTCCCTCACTGACACAGAGATGTACACAACACTCAAGATCCTGTGCATGTCAGTAGAGGAGTTTGAGGACTTCAGAGAGAACGAAGGCTGGGAGGAGGCAGATGATGACGAGGAGAAAATGTTGCAGGCACTCTCCAACGAAGGCCTGCCTAGTCTGCCCCCTCTCTGGAGGCATCTGGTGCACGCTGCAGCCCGCTTCACACTGGCCTCTTATGGGGAGGATATGCTGAGAGACAAGGTGCTGCTGGAGGATAAAGATGGCTATGCAAAACTGAGCAGCCGGCAGAGGAGAGCACTCCAGGTCCGCTACGGACAGAAGACTATCCTGCATCAGCTTCTGGAGCTCACCAAACCATAAGTTCCCACAAAAAGCACGCCAATTTATGATCTCCACTCAAAACAAGCCTAAAGGGTTAGAGCCAGTGGCCAGCTTTAGGCCTATTTTAACTGTATATTCTTGTGAATTTGTATGTGACTGATGAGCAATGGCTTCTTTGAGACTGTTGGAAGTACTTCATGGGTCATAAGTTACCCAAACCGGCAATGGACCTTAGGTGGCCGCAGCTGTCGAGTGAACTGCTTGTTAAACATATCGTAATGTACACTATCATGTTTTGCATAATAAAACAGCAGTTTCCATTTGTTATCACTGAGGGAAACAAATGCAGTTGAATTGTTTAATGAGTTAACTACAGTATGCATACATACAGGAAATAAGTAGCAAGAACTAAAAGAATTACAAAATACACACGGACCAATACATTTACAAAACATTCAAAATCCTTACAAAATGGGCTGTATTGGTCCACAATTTGGATCTTTGTACAAATTAAGGTTCAATTAGTCATCTCAAATTTTCCAAGTGCCGGGGAGAACCTAACCCACTTTAAAATGGAAAGACCATTGACCCCCACCACACCCCAAGCAGATAAAGGAGTGAACCCAGGAGAACCTTTCTTCCCACTCAAATCAAATTAGGCTGCTTTTTATTAAATCCACTATCCATTAAGCCTCAACGCAAATAAATCAGTCAAGAAATATGTAAAACAATGTAGGAGGGAGACAAAACAGGGCTTTGGTAGtgagtgaatgtgtgtctgtACACGTCATCTTTACATGTTAGATAATTTGTTGGACACTCCTTTCAGACATGGAGCTCTCTCCCTTTTAATATTTACATCAAAATTATATTAAACAGCATTCAACTCCAGGCCATATCcaggc

Function

GO:

id name namespace
GO:0032088 negative regulation of NF-kappaB transcription factor activity biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0005634 nucleus cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K05302 SETD6; N-lysine methyltransferase SETD6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223920 lncRNA downstream 15053 86504492 ~ 86504969 (-) True G197824
TU223904 lncRNA downstream 36052 86483681 ~ 86483970 (-) True G197808
TU223734 lncRNA downstream 61054 86412664 ~ 86458968 (-) True G197655
TU223739 lncRNA downstream 159331 86357692 ~ 86360691 (-) True G197660
TU223852 lncRNA downstream 165038 86347892 ~ 86354984 (-) True G197768
TU223931 lncRNA upstream 3772 86530542 ~ 86530878 (-) True G197835
TU223932 lncRNA upstream 7189 86533959 ~ 86534243 (-) True G197836
TU223933 lncRNA upstream 7591 86534361 ~ 86534589 (-) True G197837
TU223940 lncRNA upstream 24668 86551438 ~ 86551751 (-) True G197844
TU223970 lncRNA upstream 43931 86570701 ~ 86571080 (-) True G197864
XM_036957791.1 mRNA downstream 99438 86141721 ~ 86420584 (-) True ccnd2a
XM_036934360.1 mRNA downstream 115867 86401369 ~ 86404155 (-) True LOC118936857
XM_036957794.1 mRNA downstream 327914 86141721 ~ 86192108 (-) False ccnd2a
XM_036957787.1 mRNA downstream 346042 86141721 ~ 86173980 (-) False ccnd2a
XM_036957797.1 mRNA downstream 352559 86141721 ~ 86167463 (-) False ccnd2a
XM_036957969.1 mRNA upstream 131244 86658014 ~ 86676222 (-) False LOC110498617
XM_036957942.1 mRNA upstream 131244 86658014 ~ 86676223 (-) False LOC110498617
XM_036957947.1 mRNA upstream 131244 86658014 ~ 86676223 (-) False LOC110498617
XM_036957957.1 mRNA upstream 131244 86658014 ~ 86676223 (-) False LOC110498617
XM_036957958.1 mRNA upstream 131244 86658014 ~ 86676223 (-) False LOC110498617
TU223618 other downstream 556357 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 676529 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 676529 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 676529 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 1880266 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 376266 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 795369 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 3080067 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3850787 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 5062442 91589212 ~ 91591049 (-) True G203915

Expression Profile