RNA id: XM_036934371.1


Basic Information

Item Value
RNA id XM_036934371.1
length 3585
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110498636
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86707476 ~ 86714996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGTAGTTCAATGTGGCTGTGGGTTACAAACAAGTTCAAACATGAGTTACTGGTTTAAATCATAACTGGTCTCATCAAAAACCAACTCCTATTATAGTGTCACTCGATTTGATCAAATGGTGTAGTGATTCTTAGCTATCAGCAGATGGCAATAGGAGCCAACTGAGGGGTCAGTCTATAATTCATCCCCAGGGGGAGGGGAGTTTATTTTCAAGAGAAATTGCTTTGTCTAATAGACTTCCCACAGTATCTAGGCTACATTAACTTTCCTCCCGATTTTCTCTAGCAGAGTCACTGTTCTGTTTGTATTCTCAGACGGCAGTGAGTTTATTGGACTATCAATGTAATCCAGGATGGCATGCGGCGGTTTAACTAAAATCTAACAGACCTTCTGGATACTTGGAAGTAACTTGTAAGACAATTGTATTTTGTTTGAGGGTATCCTCCACAATTACGTTCTGAGTATAGTACGGCTACATCTTACCAAGAACAAAACATGACGCTTGACACCTTTTCTCTCTACTCTTCCCTCGTCGTGCAGGAAAGCTATTGACTGAAGGGGAAGTAGGTAACACACTAACGTGTCAGAAATGCTGTTCTTACCTTTAGCTCGTGTGGGCCATTAGGAACTGGGCATAAATGGACAACTGACTCAGGCTTTAAATAACCCATGATCACATATTTGGGGATAATTTCTACCAGTTCTAACCCGAGCTGTTTCGCAAACGATCCGATTTCAGCGCGCCACGACCCAATGCCCAGTGGTTGAACTGCAGAGAGAACTTGAACACAAACTGGATTTTGAACTCAACCAAAGAGTTTGACTATGCAGTCACATAGCAGATCACTCATCACTTGACGGCAATTTTCAATCACATCTGAATGACAGTCCATTGCACGGGCGAACGAGGCTGCATAAAAATGGCATCTCTGGAGAAGCGCTTCTCCGGGGCTGTGGAAACAAATAATGGCCTCAATCGTCTTGCTCTTGTGCAACAGGCTTGTTACCAATGCGGACGAAGGCCATTTCAACGCAGAGTGGTGGTTGCGGAGGTTTGGCTACCTGTCTCAAGCCAGCAGACAGATGTCAACCATGCAGTCCTCTCAAATTCTGCCCAATGCCGTCAGTGACATGCAGCGCTTCTATGGCCTAGAGCTCACTGGAGAGATGGACCCTGCCACACTGAAGGCCATGAGAAGGCCTCGCTGTGGAGTCCCAGACAAATCTGTTGAGCAGGCTGAGAATGGTGTGAGGCGGAAACGCTACGCTCTCACTGGCCAGAAGTGGGACAAGAACCTTCTGACTTACAGCATTATGAACACCACCCCAAAGGTTGGTGAGGTTTGGACACTGGAGGCCATCCGCAGAGCTTTCGAGGTGTGGGAGCGCGTGACTCCACTGAGCTTTGAAGATGTTGCTTTCCAAGACATCACTAACAGCAGCCAGGACACGCTAGATATCATGCTGTTGTTTGCATCTGGTTTCCATGGAGACATGTCTCTGTTTGAGGGCGAGTGGGGGTCTCCAGCTCATGCCTACTACCCAGGGTCTGGGATGGGCGGAGACACGCACTTTGACGCTGATGGACCCTTGACAACCACGATCCATCAGTTTCGCACCGGTGACAGCGACTACCGGAAACCTGTCTCCAGGTGGGGCAAGGTCCCATCCTCTCCTAAAGGAGCCTTCCTCAGCGATGATGGCGCTTACACATACTTCTACAAGGGCTCCAAGTACTGGAGGTTTGATAACCAGAAGATGAAGGATGACCCAGACTACCCCATATCCAGCGTGGACCCAGATACAGATGACACAGTTACAGGCCGCAAGTGGCCAACAGTGGACCAGCCAAAACCACAACCATCAGTTGGCTCAGTCCCGGATgaggtggacagagagaccaATTAGGATTACACCAACGATGTGGATTATGAACCTGATGCGAAGGACAAAGGGGTGGATGTGGTGGTGAGGATGGCTGAGAACGAGGCCAAGGTTATCACCCTGATCATAGTGACCGTGCCCCTGGTCCTGGTGCTGTTCATCCTCTATATCTATGCTATTATCAACACCCTGCAGAAGAAAGAGGCGCCCAGACTTTTGGTCCACTGCAAACGATCCCTGCAGGAGTGGGTTTGATCTGCTCCAGAAATGGattcacacacacgcaaacacatacacacaccatacatagGCACATTCCATTTGAACACATATGTACACACAAGCATTACATAACAATACAAGCACACAGTTTCCCTATCTTTCCTCCATGGTGCTTTACCCGATCTTGATTTAAGCCTGTTTATAACAAACAATATGCACTTTTAACGTCCTGTGTTTAGATTTTTGTTAGTTGCGGTTGTAGTTTAAAGCGTGTTTAGCTACAGATTTCCGTGAATGTCCTTATAAAACAGAGTGGTGGTGCGTGAATGTCTAACAGTTGTGTGTTCTGTAAACACAAGACCACCGTCTCCCACTGTGTCTTTCCTCTAGTCTACCCACTCGACCACAACAGCCCAGACTTTATCCACAAAGGGGAAACATTTGATAGACTCCCTCGGGCGAGATTAAATGCAGGGGTTATTATCATATACATCGTGCACATATTTAGGAAGGGTTAAAGCCTGCTAGAACAGAGCTGGGTCTGGGTTACATTTCCCAGGGAGGGGTTAGGAGGCATGCCAGCATTTCCTTTGCCCAAGTTAGAGTTCTCTTTTCTTAGGAGGGAGGCAAGGGGAGACGAGGAGGGAAGGAGGTGGGAcgaaggggtgggagggaggtggCACGAAGGGAAGGGTCGGAGCTCCATTGGCATTGTGCTTCATGAACTAGATTAACGAGTCACACTCCTATTTTTTCATACTTTTTTCCAAAGCGGTTTGGCTGTAGATATCTTCCTGTGGGACTCCCCCTCTCCCATGCTGTCATGTTTCACTGTAGACATACTCCATCTGCAGTCTCTCTTTATCTGGGAGTCTGCTCTCCACTGTCTGCCTAGGAGAGGCTTTAATGCTAATCTGTGATGATATGTCACATGGGTTTGTGATGAGAACAGTTTGTATTCATTTTGAACTTAACCATAAGTGATGTCCTACAAATCTTCTTGTCATTTAAAGAAATGGAAATGCCCCTCTTTGCACCCTCTCCCTTTGTTACCAACTCTTTGTGTGCCAACTTCTCTCATTCAGAGGCCAAATACTTTTTATATAACACCCAGAGTGCAATTGTTGTATTGTGCAATTGACAGATGAAGACCAATAGTTAAAGGTTTCTCCTCAGCAAAGACACTATCACATGTAAAAAACAATGGTCGAATATACTTCAGGTTTGTGGTCAATTTTGTATCAACAGTGTTCTGTCATTTATTGTTTGTGTTTTGTATTGGTTGGCTGTTGGAGAGGAAGGAATACTTAAAATTGTAGTTGtacaaaaatgtttttattcCAGTTTTTAACATTTGTACATTTGTAATGTGCTCTCTGTCCGTTAGCAGAGTTCAATGATGCATGCAGGACATGCTCTGTAAAGCTTTTacacaaatatataaatattttgcaATAAAACATGAATTAAGGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224140 lncRNA downstream 52936 86648809 ~ 86654540 (-) True G198007
TU224137 lncRNA downstream 59488 86647681 ~ 86647988 (-) True G198005
TU224104 lncRNA downstream 96212 86607931 ~ 86611264 (-) True G197974
TU223970 lncRNA downstream 136396 86570701 ~ 86571080 (-) True G197864
TU223940 lncRNA downstream 155725 86551438 ~ 86551751 (-) True G197844
TU224175 lncRNA upstream 4715 86719711 ~ 86720152 (-) True G198032
TU224177 lncRNA upstream 13507 86728503 ~ 86732160 (-) False G198034
TU224178 lncRNA upstream 13507 86728503 ~ 86732160 (-) False G198034
TU224179 lncRNA upstream 13507 86728503 ~ 86732160 (-) False G198034
TU224180 lncRNA upstream 13507 86728503 ~ 86732160 (-) True G198034
XR_005038618.1 mRNA downstream 6225 86699341 ~ 86701251 (-) True LOC118942936
XM_036934741.1 mRNA downstream 12274 86684087 ~ 86695202 (-) True LOC118937297
XM_036957952.1 mRNA downstream 31226 86658014 ~ 86676250 (-) True LOC110498617
XM_036957957.1 mRNA downstream 31253 86658014 ~ 86676223 (-) False LOC110498617
XM_036957981.1 mRNA upstream 64 86715060 ~ 86719172 (-) False zpd
XM_036957982.1 mRNA upstream 64 86715060 ~ 86719172 (-) True zpd
XR_002475056.2 mRNA upstream 28936 86743932 ~ 86747131 (-) False LOC110533876
XR_002475057.2 mRNA upstream 28936 86743932 ~ 86747314 (-) True LOC110533876
XM_036958037.1 mRNA upstream 170167 86885163 ~ 86887171 (-) False LOC118942938
TU223618 other downstream 743811 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 863983 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 863983 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 863983 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2067720 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 188040 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 607143 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2891841 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3662561 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4874216 91589212 ~ 91591049 (-) True G203915

Expression Profile