RNA id: XM_036957982.1


Basic Information

Item Value
RNA id XM_036957982.1
length 1586
RNA type mRNA
GC content 0.47
exon number 9
gene id zpd
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86715060 ~ 86719172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGACTGGTGCAATTAGGTTGCTGATAGGCTGGGAAAGATGGGGTGACTTCATTTCTGTGCTTGGCCAATGAGGTTACTCGATGGAAGTTGGGGCGCTCTGAGGGAAATGAAGGTGTGTGACTGGGGGTAGGCTTATTGCTCAGATACAAATAAACAGGTGTTTTACATTCAGGTAATCACCTAGGTCTATGGTAATTACAGCTCCAGGCCTTTCGATCTGTTGAGTATATAAGGctacgttttttttttgtattcttCAGACAGGGCTATGTTACTTTGACCTTCCAGTAATTCAAGTCagtacaaaaataaatatatattttggaaaCAGATTGCAAATAACCAATGGCGCTCAAATTCAACTTGAAGGTATTTTTGGTCCTCGTCATTTTCTGCTGTGACTGTGTCCTTGGAATATGCACTGTCACACACTGCACTGACACAACCAAGTGTTTGCTATCCCTCGACAAAAGCAACTGCAAATGTGCTGTTGGCTACTATGGAGACCTGTGTGACAAAGtTGCTACCATCAATGTCATGTGTGGCAAAGACTACATTACTATCATGGTGAATGAGGACTTTTTCCAGTACTACAAAGTACCTATGGAATCTCTGCACTTGAAGAATGAGTCTTGTCGTGCCCAAAAGGAGGTTATGTCTGATGTCCCATACTACATTGTGCGGATATCAAAGGATCAGTACGTTTCCTGTGGCGGTAAACCACTGGAGAAAAACATCACTCACATTGCATACGCCTTAACTCTCATGTCGGCCCCTCAAGTCTATGGAAATATAATAAGAGACCCAATGATAAAAATTGAGTACACGTGTATCTACCCATACATCCGCACTGTCAGTTTGCCGTACCCCATCATCCCCTTCTCTAGTGAGACTGTGATGCGGATGGGTGAGTTGGATGCCAAGGTGGAGATGGCCCTCTTCACAGATCACACCTACACAGAGGCGTTCCAAAGCTCACCGCTGATCCACCTCCGGGACAGGGTGTATGTGGAGATCAAGGTCGTGGAGCTGGAGGACGTCTTCCACTTGAGGGTGAATGAATGCTGGGCCACACAGTCCCCCAAACCCAACCAGACAGACAGCGCTGTTCACACCCTGCTGCGCAATGGgtGTGTGAATGACGACACTGTCACCTTTCTCAATACGACAATGGGCGCCAATGGAGAGGCCTCAACCATCCGGTACAGCTTTGACATGTTCCGCTTTGTTGTGGAGCCTCATGACCTGTACCTGCACTGCACAGTGCGCTTGTGCTCCCTGGACGATGACGAACCCTGCATTCCTGAGTGCAAATCTATAACCAAGAGGGCAGCAGTGCGTGGAGACCCAACTCAAGGTCTACTGTCATATGGACCAATCAGGATTGACATACCAGACCGACCCCAATCTAATCTGCTGCTGCTGATGATTCCTGTGGCTGGCATCTGGGTCCTGGGCCTCTTCCTCCTCGCCCTAATCACCATCGCTAAGGCAGGAAACCGACGACTGTCACAGCTAGCAAACCGCTGACATCCAACttgaataaaaataataatttctatGACAATTAAATGAGTCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224174 lncRNA downstream 6794 86707485 ~ 86708266 (-) False LOC110498636
TU224173 lncRNA downstream 6827 86707651 ~ 86708233 (-) True LOC110498636
TU224140 lncRNA downstream 60520 86648809 ~ 86654540 (-) True G198007
TU224137 lncRNA downstream 67072 86647681 ~ 86647988 (-) True G198005
TU224104 lncRNA downstream 103796 86607931 ~ 86611264 (-) True G197974
TU224175 lncRNA upstream 539 86719711 ~ 86720152 (-) True G198032
TU224177 lncRNA upstream 9331 86728503 ~ 86732160 (-) False G198034
TU224178 lncRNA upstream 9331 86728503 ~ 86732160 (-) False G198034
TU224179 lncRNA upstream 9331 86728503 ~ 86732160 (-) False G198034
TU224180 lncRNA upstream 9331 86728503 ~ 86732160 (-) True G198034
XM_036934371.1 mRNA downstream 64 86707476 ~ 86714996 (-) False LOC110498636
XR_005038618.1 mRNA downstream 13809 86699341 ~ 86701251 (-) True LOC118942936
XM_036934741.1 mRNA downstream 19858 86684087 ~ 86695202 (-) True LOC118937297
XM_036957952.1 mRNA downstream 38810 86658014 ~ 86676250 (-) True LOC110498617
XM_036957963.1 mRNA downstream 38837 86658014 ~ 86676223 (-) False LOC110498617
XR_002475056.2 mRNA upstream 24760 86743932 ~ 86747131 (-) False LOC110533876
XR_002475057.2 mRNA upstream 24760 86743932 ~ 86747314 (-) True LOC110533876
XM_036958037.1 mRNA upstream 165991 86885163 ~ 86887171 (-) False LOC118942938
XM_036958026.1 mRNA upstream 165991 86885163 ~ 86887339 (-) True LOC118942938
XM_021575350.2 mRNA upstream 219123 86938295 ~ 86967493 (-) False LOC110498693
TU223618 other downstream 751395 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 871567 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 871567 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 871567 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2075304 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 183864 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 602967 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2887665 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3658385 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4870040 91589212 ~ 91591049 (-) True G203915

Expression Profile