RNA id: XM_036958026.1


Basic Information

Item Value
RNA id XM_036958026.1
length 1606
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118942938
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86885163 ~ 86887339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAGATGCGCTCTCTCTGAAGTTGAAGAGGTGGGTGGCGGGAGTCTGTCAAGTGTCAGGGCCGGAGAATGACTTGAGAAGGTGTTGGGTTACATGGTTTCAAGAGAGGATACAAGTAACGTTAACAGTTCCCCAACATTGGAGGAACAGAAGGCGTCTTGAATAACTGATGGAGATGGCTGAAAGAGCAGAGACAGAGTACACAGAATCTGACACATTTTGTGATTCACCCAGGAGAGGAAAAACCAAAAAATCAAAGAAAGACAAATGTCTAAAAAAGAACAAAACACACAGGACAGAGTTGAAAGACACTGGTATTGAAGAGAAAAAGAAAACCAAAAAGGCCAAAGGTAAcaggaagaagaaaaagaagggaAAAGTAGCCCTGGGATTACAAGATAGCTATTTTATTTTTGAGGGAAACAGTGCACCAAACTCTCCAATAAAGCCAATTAAGTCTAGGGGGAAGTCCACTGTAAAATTTGCTGTAAAACATTACATTAAGAAACAGGAACCTTTGCCGGTGGTTAGTGACTTAGTGAAGGTACCCAAGAAGAAGGCCCAGAGAAAAAAGAAAGTTGCATTTGATTTATTCCCTGATTACATACAAGCAAAACAGCCAGAAGTAGTCAAGTGTTGCACCTCAACAACCAAAGATACTTTTCCCTGGGAAAGCCCCAAGAGTGACAATGAAAGCAACTTTTCTGGGACTTATCAGTGTAGAGAGGGGCAAGAACAGGGAACAGAGTATGGAAAGGGACAAACCAACTCGCAAAGTACTGCTGAAGATGCCAACAGTGAGGACCTGTTCATAACTCAGAAGAAATTCAGAGTACTAACATCTTCAGATCACTCCAGCAGTGGAGGCACTGGTGAAGCCAACACCACAAAATTGGCCAGGCATACCAAGTCACTCATAGAGCCAAAAGAGGAGCCACTGCTCTGGAAGTCAACATCTGAGACAGCCACTCAAACAGAGAACTTCTTTACCTCAGAGATCTCCACATTCCTCAGGTTTCACCAGTCGTGTGGAGCTACCGAGTGCTCAGAGCAACCTACTGACCTGTCTCTCCCTAACAGGACGAGGGCAGAGATGGGCATACATCCCCCATCTCAAAGAAAAGCCAATGAAGAGGAAACAAGCCCCCCACTTGGCCAAAAGTCAGACACAACGTCAAGTGAGGAGAATGACCCATTCTGGCGGTGCAAGAGTCAAGTTAAGGcagttcagatgagactgaatgaaTCTTTCTTCTTTAAGATGAAGGGCGAGGGACAGTCCCCAAGACCACAATCTCCCTTGATGAAACTTACACAGGCCTGTGGTAGGAAGAAAACAAAAAAGTAACAAGTGAAGTTTAAACCCAAACTTCCCCTCAAGAACTAAAAAAAAGTCAAAAACAATACAATTTTATTAGTGATAGTCATTCAAAAGGATACATTTGCTTTGTGGCGTTCTTTGTCCCAGGTTTCCAAAATAGGTTCATTTTATAGTTTTATATGTTTAAGTTTAATTAAAAACACATTCAATAAAAACATGTATTAATGCACATTTTATGGAAGAAATTGCATGTCACTCATCAAATAAAGTTTCTTAATTTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224386 lncRNA downstream 11963 86871246 ~ 86873200 (-) True G198231
TU224385 lncRNA downstream 14528 86870424 ~ 86870635 (-) True G198230
TU224379 lncRNA downstream 21902 86862908 ~ 86863261 (-) True G198224
TU224225 lncRNA downstream 124231 86760709 ~ 86760932 (-) True G198074
TU224180 lncRNA downstream 153003 86728503 ~ 86732160 (-) True G198034
TU224513 lncRNA upstream 48064 86935403 ~ 86937181 (-) True G198334
TU224741 lncRNA upstream 223182 87110521 ~ 87110780 (-) True G198543
TU224745 lncRNA upstream 226083 87113422 ~ 87113621 (-) True G198547
TU224750 lncRNA upstream 235404 87122743 ~ 87123099 (-) True G198552
TU224760 lncRNA upstream 245680 87133019 ~ 87133236 (-) True G198562
XR_002475057.2 mRNA downstream 137849 86743932 ~ 86747314 (-) True LOC110533876
XR_002475056.2 mRNA downstream 138032 86743932 ~ 86747131 (-) False LOC110533876
XM_036957981.1 mRNA downstream 165991 86715060 ~ 86719172 (-) False zpd
XM_036957982.1 mRNA downstream 165991 86715060 ~ 86719172 (-) True zpd
XM_036934371.1 mRNA downstream 170167 86707476 ~ 86714996 (-) False LOC110498636
XM_021575350.2 mRNA upstream 50956 86938295 ~ 86967493 (-) False LOC110498693
XM_036958066.1 mRNA upstream 50956 86938295 ~ 86967495 (-) False LOC110498693
XM_021575336.2 mRNA upstream 50956 86938295 ~ 86967497 (-) False LOC110498693
XM_021575339.2 mRNA upstream 50956 86938295 ~ 86967497 (-) False LOC110498693
XM_021575334.2 mRNA upstream 50956 86938295 ~ 86967498 (-) False LOC110498693
TU223618 other downstream 921498 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 1041670 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 1041670 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 1041670 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2245407 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 15697 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 434800 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2719498 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3490218 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4701873 91589212 ~ 91591049 (-) True G203915

Expression Profile