RNA id: XM_021575339.2


Basic Information

Item Value
RNA id XM_021575339.2
length 3369
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110498693
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86938295 ~ 86967505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTAGGTTAGTGGTGCAGCACTGGTCATGACGGAGGGAGAAAGTAGGTCACAGACAGAGTAACGTTACCGTTTTATATCACAGTTCACGTAACATTAGACAGAGGGGTCCATTAGATGGAGATGTCCTAGCTAGTTCATCTCATGTAAGTAGATACATAATATTTTCAGCATGTGTCGTGATGACTAATGGCTAGTTGCATAGCTAGCTATATATCGCGGTTCTAGTTGGCTAACGTCAGCTAACTAACGTTACCTTAGATAACAAGATTAATTTAGGGCTAGCCAAGTTAGGACAATGTAAACTTAACGTTTCGCTGTGGCTAGAAGTGTCTTAGATGAAAGTGTATTTTAGCTGTGGACTAAAATATCCAAGCCTAGTAATGTTAACGTTAGTTAGGGTCTgtagctttttttttttgctggaCAGGGGTATCATCCAACGTTAGTTGGATACGTCATTAGTTGGAGCTAGCTGGGCTCGTTAATAATAGTGTGGAACTGCAGCCCGTAATTCGTTGCGTTCCTGCATGTGAGCGCTCCCCCATGTGGGCGTTCCTGCAATTCGGGGCAATCCTGCATGTGGGCATTGGAGGCaaccatagctgtatggatctgtgcaaAACTGCAACAGTAGCGCACCTATCCCAGTGTCCCAGAGGAGGAATAGAAGCCAGGCCAACCAACCAGgaggtgtttctctctcttcatctcaaaCCACGAGCAGAGCAATTGCAAATGGATGGAAGAAAATTCCAGAAGCTGTAATGAACATTTGTGATTATCTAATGGCAGACCAAAGAATGGACATTACCTCTACGATGAATGAGTTCATGTCCCCCAGCTCCACCGAGCTGATCAGCAGCTCCATCAACACCCAAGGCATGGACTACACCCGCAAGAGGAAGGGCAGCACCTCCGACTACCAAATTGATGGATTTTCTTTTGACGAGAGCAGTATGGATACAGACAAGGATAAGCTTAGGGATTGTGGTGATCATCAGGGGCGGATCAAAAATGCCAGGGAGGCACACAGTCAGATTGAGAAGAGGCGCAGAGACAAGATGAACAGCTTTATAGACGAGCTGGCAGCGCTAGTGCCTACTTGCAACGCTATGTCCCGCAAGCTGGACAAACTCACAGTTCTACGCATGGCTGTTCAGCATATGAAGACATTACGAGGCGCAGCGAACCCATACACAGAGGCGAACTACAAGCCGTCTTTCCTGTCCGATGATGAATTGAAGCACTTAATATTGAGGGCTGCTGATGGCTTTCTGTTCGTCGTCGGATGCGATCGTGGGAAGATCCTCTTCGTCTCTGAGTCTGTTTACAAGATCCTCAACTATAGCCAGaATGACCTAATTGGCCAGAGTCTGTTTGATTACCTGCATCCTAaagacatcgccaaagtcaaggagcAACTGTCGTCATCGGATACAGCACCCCGGGAGCGACTCATCGACGCCAAAACTGGCCTGCCAGTGAAGACTGACATTACCCCTGGGCCGTCTAGACTGTGCTCCGGAGCCAGACGTTCTTTCTTCTGCCGTATGAAATGTAACCGGCCCTACGTCAAAACGGAGGACAAGGACTTCCCCTCCACCTGCTCAAAAAAGAAAGCTGACCGCAAGAGCTTCTGCACGATCCACAGTACTGGCTACCtgaagagctggccgcccagcaaGATGGGTTTGGACGATGACAACGAGCCCGACAACGAGCCCGACAACGAGGGCTGTAACCTCAGCTGCCTGGTGGCCATCGGCCGGCTGCACCCCCACATCATACCCCAGCCCTCCCATGAGGACATCCGCGTCAAACCCACCGAATACGTCTCCCGCCACGCCATCGACGGGAAGTTCGTCTTTGTTGACCAGAGGGCCACAGCCATTCTTGCGTACTTACCCCAGGAGCTTCTAGGCACCTCCTTCTACGAGTATTTTCATCAGGATGATATTGGCCACCTGGCAGAATGTCACAGACAAGTGCTGCAAATGAGAGAAAAGATCAACACAAACTGTTACAAGTTCAAGATTAAAGATGGCTCCTTCATCACGCTGAGAAGCTGCTGGTTTAGTTTCATGAATCCCTGGACAAAAGAGGTGGAGTACATTGTCTCCACAAACACAGTGGTCTCATGCAGTATGCTAGACGGTGCAGACCCCTATCCTCAGTCTGCTGCTTCCCCCACAGCCTCTATGGACAGTGTGCTGACGTCAGAAGGTGGAGGGAGACGGGCTATTCAGACGGTGCCAGGCATCCCTGGCGGAACACGGGCAGGTGCCGGCAAGATCGGCCGTATGATCGCAGAGGAGGTGATGGAGATTCAGAGGACCAGAGGCTCAACACCCTCTAGCTGTGGCTCCAGCCCCCTGAACATCAGCACCCCCCCTCCAGACTGCTCTCCAGGGAGCAAGAGGATTCAAAATGGTGGGACACCAGACCTTCCGTCGGCAGGAACACTACCAGGAGGACCTGACTCCATTGGATACCCATACTCCAACCAGTCCATTATGAGTGACAACTCTCATCTCAGCATTGACATCATGGACGAGCCAGGCTCCAGCAGCCCCAGTAACGATGAGGCAGCCATGGCTGTGATCATGAGTCTCCTGGAGGCTGACGCAGGCCTTGGGGGCCCCGTGGACTTTAGTGACTTACCCTGGCCCTTGTGATGACGGCCCAAGAGGAACGAGGCATAGCAGGACTGTTGGAACTCTTGGGCTAAGTCCCACAGAACTATGTCAAAACCCTGAATTGATGATGCAGTGGCATCATCAGGAACCATGGCACTGTGGGACTTATTGGAGCCGAGACCTCCATGTTGGGACTGAGACAGGTCATTTCAAAGTATACCTGTATGTGCCCTCCTTAGCTTGCTGCTGGACATTCTTCACCACAGGATAATTCAGCATTTTTCAATGGCTATTTTCCTGCATTATCCTACCAGGGATTTCTATTGAAAACCTGTTTGTGTTTGGATGTttttacactacagtacacattgGTTTTCCTTGTTGGATAACCCCATTTGAAAATGTCTTTAAATAGTATAATGTACAAAATACTTTATGCAAAATATATGGTGTGTGTATTGTATCCGCAGTGAAATATTAATTGTATCAGcagttaaatattttttattaaaagtTTGTTTTGTATCTCTTTCCAGAAGACTTTGAGCTATAAACAGAATTTGATGCAGTATGTTATTGACGCTAATGAATAAATTGTATCCATATTTACAATGTTCAAATGTCACTCTCATACTACCAGAAGCATTCTGAACATGAATCCAAGGGTGGGTGAGTGAATCATTCAGGGAATTGCATGTAACGGAAGCAattaaattaatttatttcacaGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224513 lncRNA downstream 1114 86935403 ~ 86937181 (-) True G198334
TU224386 lncRNA downstream 65095 86871246 ~ 86873200 (-) True G198231
TU224385 lncRNA downstream 67660 86870424 ~ 86870635 (-) True G198230
TU224379 lncRNA downstream 75034 86862908 ~ 86863261 (-) True G198224
TU224225 lncRNA downstream 177363 86760709 ~ 86760932 (-) True G198074
TU224741 lncRNA upstream 143024 87110521 ~ 87110780 (-) True G198543
TU224745 lncRNA upstream 145925 87113422 ~ 87113621 (-) True G198547
TU224750 lncRNA upstream 155246 87122743 ~ 87123099 (-) True G198552
TU224760 lncRNA upstream 165522 87133019 ~ 87133236 (-) True G198562
TU224910 lncRNA upstream 254955 87222452 ~ 87223378 (-) True G198676
XM_036958026.1 mRNA downstream 50956 86885163 ~ 86887339 (-) True LOC118942938
XM_036958037.1 mRNA downstream 51124 86885163 ~ 86887171 (-) False LOC118942938
XR_002475057.2 mRNA downstream 190981 86743932 ~ 86747314 (-) True LOC110533876
XR_002475056.2 mRNA downstream 191164 86743932 ~ 86747131 (-) False LOC110533876
XM_036957982.1 mRNA downstream 219123 86715060 ~ 86719172 (-) True zpd
XM_021575393.2 mRNA upstream 69797 87037294 ~ 87039516 (-) True rassf10a
XM_021575401.2 mRNA upstream 76392 87043889 ~ 87138769 (-) False LOC110498779
XM_021575409.2 mRNA upstream 76392 87043889 ~ 87138769 (-) False LOC110498779
XM_021575418.2 mRNA upstream 76392 87043889 ~ 87138769 (-) False LOC110498779
XM_021575425.2 mRNA upstream 76392 87043889 ~ 87138769 (-) True LOC110498779
TU224521 other downstream 34339 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 974630 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 1094802 85836299 ~ 85843493 (-) False G197498
TU225173 other upstream 354642 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2639340 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3410060 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4621715 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 4819690 91787187 ~ 91788103 (-) True G204024

Expression Profile