RNA id: XM_021575471.2


Basic Information

Item Value
RNA id XM_021575471.2
length 5738
RNA type mRNA
GC content 0.52
exon number 31
gene id mical2b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87170110 ~ 87259603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGTACCGCCTTTTAAAGATTTTGTCGGGCATTATCAAATAGTCATTGGGCATTATCTACAGCTCCCATTTGAAGGCTACAACTTGAGTACATTTCAGtagtcaacagactgagctagaagTTGGATACCTTGACGTTAATTGCTCGGTGGACATTTGTAACGCCTGGAGGAAAGTGTATTCTGGATAAAGCAAGGCGTCTTTATTTGGACAGCTGTCATTTTAAAGTTAGTTTCAATTCACACACATATAACCCGCTGAGATGGCAGTTGTCATAGTCTAACTAAGCCTGTGAGGGCTGGGGCCGGAGTGAGGGACTGCCCAGACAGTCTCCAAAACGGAAGATGTGTGAAACAGAGGATGAGAGGAGTGCTCAGGCCAGGCAGCTCTTTGAGAACTTTGTCCAGGCGTCCACATTTAAGGGCACTATGCAGGCCTTTAGTATCTTATGCAGGCAGATGGATCTGGACCCACTGGACTACAGGAACTTCTACAGCAACCTCAAAGCCACGGTCACCAACTGGAAGGCCAAGGCCCTCTGGACCAAACTGGACAAGAGAGCCAGCCACAAGGAGTACAAGAAAGCCCAAGCCTGTGAGGGCACAAGGTGTCTGATCATCGGAGGGGGCCCTTGTGGTCTGCGTACGGCCATCGAGCTGGCTCTGCTGGGAGCCAAGGTGGTGGTGATTGAGAAGAGGGACACCTTCTCCAGGAACAACGTGCTGCATCTGTGGCCCTACACCATCCATGACCTCAGGGGCCTCGGGGCCAAGAAGTTCTATGGCAAATTCTGTGCTGGAGCCATAGACCACATCAGTATTCGCCAGCTCCAGCTCATGCTACTGAAGGTCTCCCTCATTGTGGGGGTGGAGGTCCATGTCAACGTGGAGTTTGTCAAACTGTTGGAGCCACCGGAGAACCAGGAGAATGAAGGGCCTGGATGGAGAGCAGAGATCAGACCACAAAACCACCCCCTCGTTGACTTTGACTTTGACGTGGTGATTGGCGCAGATGGACGCAGAAACACGCTAGACGGTTTCAGGAGGAAAGAGTTCCGGGGCAAGCTGGCCATAGCCATCACAGCCAACTTCATTAACAGGAATACCACAGCCGAGGCCAAGGTGGAGGAGATCAGCGGCGTGGCCTTCATCTTCAACCAGAAGTTCTTCCTGGAGCTCAAAGAGGAAACCGGGATTGATCTGGAGAACATTGTGTACTACAGAGACAACACGCACTACTTTGTGATGACCGCAAAGAAGCAGAGTCTGCTGGACAAGGGAGTCATCattcatGATCACCTTGAAACAGAGAAGCTGCTGGGCAGAGACAACGTGAACCAGGAGGCTCTTCTCTCTTACGCCCGGGAGGCGGCCGACTTTGGCACCAACTACCAGTTGCCCTCTCTAGACTACGCCATCAACCACTGCAGCCAGCCCGACGTGGCCATGTTCGACTTCACCTGCATGTACGCCTCGGAGAACGCAGCTCTGGTCAGGGAGAAGTACGGACACCAGCTACTTGTGTCCCTGGTGGGGGACAGTCTActggagCCCTTCTGGCCCATGGGGACTGGCTGTGCTCGAGGCTTCCTGGCTGCCTTTGACACGGTGTGGATGGTGAGGGGCTGGGTGCAGGGCAAGACCCCCCTGGAGATCCTGGCAGAAAGGGAGAGTCTCTACAGGCTATTACCCCAAACAACGACAGAGAACATCTCAAAGAACTTTGAGCAGTACACCATTGACCCGGTAACACGGTACCCAAACCTCAACTCCAGCTGTGTCAAGCCACATCAGgtgTGTCACCTGTTCATAGACGGGCAGCAGAACTCCTATCCTCTGGAATGCTGTGGACCTACACATAGATCTGTCAGTCTCTCCAGACGGGAGTCGGACATCCGGCCAAGCCGCCTCCTCACCTGGTGTCAGAAGCAGACTCTGGGTTATAGAGGCGTGGACGTCACCAACCTCACCTCCTCCTGGAAGAGTGGCCTGGCGCTCTGTGCTCTTATACACCTCATCCGACCTGACCTCATTGACTTTGACTCCCTGAATGAGGAGGACTCAGCCAAGAACAACCAGCTGGCCTTTGACATAGCAGAGCGTGAATTTGGTATCCAGCCTGTGACCACGGGGAAGGAGATGGCTCTGGACCAGGACCCAGACAAGCTGATGATGGTGCTGTACATCTCTAAGGTTTACGAGATGTTCCGCAACTCACCTGCATCCATCACTGGTACAAGAGAAACGGATGAAAACAATGAGGACTATTCGTCCGAGTCTGCAAACTCAGTTTACAACTTAATGAACCAAACACAGCCAAGAAAGAGGATCCCAAAGGATGACAAGAGGCTGGAGGAAGATGACCCAATGAGCAAAAGACGAAGAAAGGGCAACTACTTAGAGGAGTTGTCCTGTCAGAGTGCCCCCCCTGCAGGTGAGGGCGGAGAGCAGAGTAAGGTGCGCTCCATGGCCACCCAGCTGCTGGCCAAGATTGAGGAGAATGCGGCGCCTGGCGGTGCCCTGCGCAATAAGCCTTCTATCTATATGCGACTCTTAGAAAAGCCTGCAGCCGTGGCACAACCCATTCCCCTTCACATTCCAACATGGTCCTGGAGTCCTTCACAGGAGGATCAAACACAGGCATCTCGGCGCACAGAGTTTGTGCAGCAGAGAGTGTGGATTCCACGCACCGAAACCCCAGACGATGTAGATTACCCAGAAGACCCCTCTCCTGACCCCACAGGGATGAGACAGCGCCTAGAGAAGCTGGGGGACAAGATGAACCAGTGTGTTGGAAGGAAGGAGTTTCCTCAGAACCTGGGAGGCAGTGACATGTGTCACTTCTGCTCCAAGCGTGTGTACGTGATGGAGCGTCTCAGCGCTGAGGGCTACTTCTTCCACAGGGAGTGTTTCCGCTGTGACGTCTGCAGCTCCACCTTACGCCTGGGCGGACATGCCTACAACTCCAAACAGGACAAGTTTTATTGCAAGCTTCACTATTCTCAGCGCCGACCCAGGCTTCAAAGTTCAAACAAGTTCCAGAGGAGAACGAAGGACCAGGGACATCTGACCTCTTCGCCGGACGGTAGTGACCCCAACTCAACCACGGGCAGCCTGCAGAGCCAGCCGCCAGGACGTCACTACAGATGCACAGGTCTGATGAATGGACTGTACACCCGCACCGTGCCTGAGGTGGCCATGGGCACAGTGAACCTGGACATGCCTGACTCCAACAGGACTGCTGACTCAAAGAAACGGGCCAACTCCGATACATCTCTCAAACCACAAGATTCTGCACAGGAGAAGAAAGAACATTCCAGTACCAAGTCATCCCTCCCATCTGGGAACAGCAGATGGAAGAGGAAGATACGTGCTACTCTCCCTCTCATCCTGGTGAGGCACTTCTCACGTGAAAAAGCTGCAGAAAAAGAAGAGCCCAACATTGAAGAGGCCAACTCTGATTTTGAGGAGATTGAACCACCGCAGGTCTCCCATGTTGGTCCTAAACCACCTGCAGATTCTCAGAATCAGAGTTCATCGATGGGTAAAGAAGAGTGCCAGGTCACAAAAGTGCCCCAGCTGGAGGAAGCAGTCAGCCGTAAGAAAAGGCTGACACTGTccctgtctgagagagagaaactcctGGACTGGAACCTGGCTACTCGAGAGGAGGCCCAAGGCCCTGGAGGAGGAGATCCTTCGACACATCCCAAACCTGGGGACCAGATCCCCCCGAAAGACCTATTGCCTCGGGTAGAGGCAGAACCAGTCCCAGCTCAGCCCCAGCCAGTTCCGTCCGCATTCCAGGTGTGGGCCAATGCTTTCAGGAGGTCTTTTGGAGTATCAAGGACAACAACAGACTCCAACACGGTTGTCACCAGGAGGAAAAACAACAGTCCCACCAAGCGTAGGCCTCTGTCTGATGGAGCCTTCAGCTTTAGCTCCCTGTTTGGGGATACCGCCCAAAGCCAGGAGGCCCAACCAGTGGAAGTGGGGCCGAAGAGCCAGCCGTCCCCACATCCACTCAAGGCCTCCATGGGTGACAGACCCACAGACCTGCCCACGCTACTGGAACAGGTCTCCCTAGGCAGCAACAAGTCTGTAGGATCCTTCACCACAGACGACATGGCTTCACTGCCGCCCAGGAAGCTCAACTTTTTCTCCTCCCTGAGGCTGAAGAAGAGGGGGGGACCGGAGAGCGTGGGAGTGGGGGGTCAGGAGAAGGACATCAGGACCATCCTGTCCAACATCAGGAAccaagCCTCCAGCAAACAGCAGAAAGATGAGTCCGACTCCTCAAGTGACGATGAGCAGGTCCCAGCCAAACAGAAGTTCCATGGGAGCtcggagagacagaggaggagacgggAGAAGACTGTGATTCAACAGGCCAAGCGAGAGCAGCTGAAGAGGCTCCACAGAGCCCAGATCATCCAGAGGCAGCTGGAGGAAGTgggggagaagcagagagacctggaggagagaggggtgaccaTTGAGAAGGTCCTTCGAGGTGAAACCCCAGacAAAGGTGATGGTCTCTCTGATGAGCACGAGCTCCTCCAAATGTGGTTCAAGCTGGTCCTGGAGAAGAACAAACTGGCACGCTATGAGGAAGAGCTAGTCATATTTGCTCAGGAACTCGagctggaggacagacagagtcAACTACAGATAGATCTACGACGCAGGATGTCAGTAGACGACTCCAGGAAGAGCTCCAGTGAGCTGGCGGAGGAGCAGCAGATGCTGACCGAGATCATGaaggtggtggagaggagagacactcTGGTCAGCCTGCTGGAGGAGCAGCGGCTGCAGGAGAGGGCTGAGGACAGAGACCTGGAGAGCCTGGTGCTGTCTAGGGGCTACCAGTTCCATTGGACCTGAGGAGTTGCATCCCTCTGGGGCAGGGAAAATGATAACAGTACCATGCAGCTCTATGGGTAGAGGCGACAAGTGACTACACTACCGGATTTGGCCTCAGTCGGCATGTTGACCTTTTGAATATGTATATAGGTTTTACTTGTCAATTCCTACTTGAGGATCACGTCTCTTATAGACCTGAGGGTTGTACATCCAGTGTCTGTATGCCTAGTCTCTCTTGGCAGCCTTCTGAGATTACTGTATGCCTAACCAAGAACACCTCATATTCTGTCGTATGAATGGAATAAATGAAATATGATTTAGTTTTTTTGAATTTGTCAGTTGCACTGGAAAGCACTTAGAAACACTACAGAAACCCAAAGATTCATCCTATCAAGTATGTTTTCGCTCTCAaagcaaaatgtattttgtatgtgTAGGTCTCTATTGTAGGTCTCTACTGTTCATGTGTTGTGCTGTTGTGTTGAGAAGCACTGGAAAAACTACTGTATGTTGTATAACTTAATCTGCACTATACCAAGGAACTTAATCCACTAATACACCAAGTTGAGACTGTGTCAGTGGTCATGGTTGTCCATGTTTATCATTTTCCACGGGACTTTTGACTATTATTCCTGCATGTTGTCTATCCTAGTACTCAGTACTGACCACAACCAACAGGATTTTATTCACTTTTTTGAGTCCTCCTTGCCCAACTTTGTTGGTTCAATTGATTTAGTTTGATATGAGTTTAGGGGTGTCTCCATAGCACAATAAATTGAGTTATTAAATCCTAAACTGACAGACTGATCTGTTGCTGtttatttttattctgtaaaAATTTgatgaaataaaatataattaaTAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224760 lncRNA downstream 36874 87133019 ~ 87133236 (-) True G198562
TU224750 lncRNA downstream 47011 87122743 ~ 87123099 (-) True G198552
TU224745 lncRNA downstream 56489 87113422 ~ 87113621 (-) True G198547
TU224741 lncRNA downstream 59330 87110521 ~ 87110780 (-) True G198543
TU224513 lncRNA downstream 232929 86935403 ~ 86937181 (-) True G198334
TU224872 lncRNA upstream 8388 87267989 ~ 87276175 (-) True G198658
TU225155 lncRNA upstream 29411 87289012 ~ 87301865 (-) True G198900
TU225163 lncRNA upstream 42333 87301934 ~ 87302148 (-) True G198908
TU225164 lncRNA upstream 42592 87302193 ~ 87302446 (-) True G198909
TU225178 lncRNA upstream 43199 87302800 ~ 87303618 (-) True G198917
XR_002469870.2 mRNA downstream 20003 87144723 ~ 87150107 (-) True LOC110498811
XR_005038633.1 mRNA downstream 23913 87144723 ~ 87146197 (-) False LOC110498811
XM_021575409.2 mRNA downstream 31341 87043889 ~ 87138769 (-) False LOC110498779
XM_021575564.2 mRNA upstream 104649 87364250 ~ 87366299 (-) True LOC110498882
XM_036958262.1 mRNA upstream 106562 87366163 ~ 87404994 (-) False ppfibp2b
XM_036958240.1 mRNA upstream 106562 87366163 ~ 87492584 (-) False ppfibp2b
XM_036958254.1 mRNA upstream 106562 87366163 ~ 87492584 (-) False ppfibp2b
XM_036958244.1 mRNA upstream 107691 87367292 ~ 87492584 (-) False ppfibp2b
TU224521 other downstream 266154 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1206445 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 1326617 85836299 ~ 85843493 (-) False G197498
TU225173 other upstream 62538 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2347236 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3117956 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4329611 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 4527586 91787187 ~ 91788103 (-) True G204024

Expression Profile