RNA id: XM_036958262.1


Basic Information

Item Value
RNA id XM_036958262.1
length 2974
RNA type mRNA
GC content 0.53
exon number 26
gene id ppfibp2b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87366163 ~ 87492584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTGACTCACCTCGATTGCACAAAGTTTGTCACTCAGCAGATGGAGGGATAGCTTTCAAAGTTCACTATCTTTCGATCTTACAAGCTGACTGACGCCATGGCATTATAAGAGCAGAGATATTTAAGATAGTGGCCTCCACTAATAGCAGACTGCATAATCTTACATTTTGAGAAGACTTtctgtagctgtgtgttccaGGACAGGCTGCTAAGCATGCTTTGGATCAAAAGTGGAGCGGTCTTGTCTCTGCCTTATACACCAGAGCTGCTGAGCCGGAACTCATTGGAGACCCAGAAACTAGATCTGATGGATGAGGTTTCCTACCTGAAACTGAAGCTGGTCGGCATGGACGAGAAACAGAACCACAACGACAGCAGCAAGGACCAGCAGAACAAAGCTGAGtgtGTGGTAAATCTGATAAGCGAGCTCCAGGAGCAGATGTGTAGGTTTCAGGAAGAGATCCACACCCGCATCATGGAGAAACGGGCCATGGAGGCCCAGGGGGAGAGTGGTGCCCGCGAGGCCCACGACCAGAGCCCTGACGTGGGCTTGGGTGGCACTGACATGGAGGAGTTTTGCTGTCGCTGTGGAGGACAGAATGGCTTACTGCAAGAACTCAGGCTCCTCAAGAGTAAAGTGGATGTGCTGGAGGGGGAGAAATTGCAGTATGAGAGAAAACTAAAGGCCAcgaagGTGGAGATAGCAGACTTACAGCAGATACTGGCTTCCAAAGACTCTGAGATCGAGGGCCTTCAGAGCCAGCTGGTCTCCAGAGGCCCAATGACCAATGAGAATCCAGAGAGAGTGGAGGTCTTTAGGAGACTGCTGACAGACCAATACCAAGAATTCCAAAGGTTGAAAATGGGGATGGAGTCGTTGTTAGCGGCAAATGATGAGAAAGACCGTCACATAGAGGAGCTCACTGTTCTCCTGAGACAGTACAGGAAGATGAAGGAGGTGATGGCCCTCGCACAAGTGACCAGTGAGAAGCTCCTTGTGGGGAGCAGTGAGGAGGAACTGAGCGGGAGTCTGAAGATGAGAGCTCTCACACATAAAGCTCATTCAGACATCATCCGTTCAGAGATGTCTTCCAggtgctcctctcctctgttaaGGTCTTCCTCATCCTTCCAGAAAGAGCTGAACTCTAGTATCCAGACCTCCCTGGAGACGTCCATGGTGATGGTCTCCCCGAGCGATGCTGGCTGCTTCCACAACGGACAATGGTCCCAACCACAGATGCTTTCAAGCAGCCTGGAGGAGTTACAAAGCAGATCGTTACCAAAGCATGTAGTGGGTCAACCAGTTGAAGCGGTTTCAGAGAATCGGCACATGGAAATGAACAAATATCAGACCCTACCAGGGAAGCTATCTCGACCTGACATGAATGGGGATCAAGAGCAGTATGCCGCACCAGTCCAGCTGTCCCCTGACGATAGCGAGGACAGTGAGTTGAACCTAAGAAAGTCGGAGAGACTGGATGAGTCCACGCAGTCGGACCTGTCCCCCCTGTCGTCTGGAGTGGACTCAGGAAAGCAgtctcctgtctccccagagAACAAGAAGAACCACCTGGGCATCAAGAAACTCTGGGGGAAGATTCGGAGGACCCAGTCTGGCACCCTGCAGAGAGAGGACCTTGAGCCTGGAGAGTTTAAGAGGGGGGGACTGAGAGCCACCGCCAGCCCTCGTCTGGCCCGGACTGGAGAGACATTGACCTCTGTGTGgGATTTGAAGACACCCTTCTCCAAGTGGACTCCGGAGCAGGTCTGTTGCTGGCTAGAGGAGAGTGGGCTGGACCAGTATGTGATTCTGGCCCAACATTGGGCCAATAGTGGGCAGACCCTCCTCTCCGCCTCACCACAGGACTTAGAGAAGGAAATGGGTATTAAGAATCCACTGCACAGGAAGAAGTTGCAGTTGGCCCTCAAGTCCTTCAGCACCAAAACGACTGAGAAATCCTCTGAACTGGACCACATCTGGGTCACACGTTGGCTTGATGACATTGGTTTACCTCAATACAAGGGTCAGTTTCACGAGGGAAGAGTGGACGGCAGAATGATTCAGTACTTGACAGTGAATGACCTCTTGTTCCTGAAAGTGACCAGTCAGCTCCATCATCTCAGTGTGAAGTGTGCTATCCACGTCCTCCACGTCAACAAGTTCAACCCCAACTGCCTGAAGAGAAGACCTGGAGATGAGAACAAGACTTCTCCCTCGGAGGTGGTTCAGTGGTCGAACCACAGGGTGATGGAGTGGCTTCGCTCAGTGGACCTGGCGGAATACGCACCCAACCTGAGGGGCAGCGGTGTGCACGGGGGCCTCATCATTCTGGAGCCTCGTTTTAACTCAGATACCCTGGCAATGCTGCTGAACATCCCCCCTCAGAAGACCCTGCTGCGACGTCACCTGGCCACCAACTTCAACATGCTGGTGGGCTCCCAGGCTCAGCAGGAGAAGAGGGAGTTCATGGAGTCTTTAGGCTATGCTCCGCTCAGCACCACAGCCAAAGTCAGGCCAAAGAAGTTGGGCTTCTCAAACTTCGGCCACCTGAGGAAGAAGAGGTGTGACGAGTCAACAGACTACATTTGCCCCCTGGAGGCGGCCCAGGTTCAGGCGGTGCTGAACGGGGCCCACCGGCCCTACTCCGGCTTCAGGGGCCTCAGCCCCATCCtagacagagacccagacagacgGCAGCAGATGGCGGTGACAGAGGGGCCCGTGCTGCAGATAGAAGCTCTGTCTGAGGGAATTAACCAACTCACGGGTTCCAGAGAAGAAAGAGGGGCTGGAGCTGTTCCAAACATCAAAGACAGACCCATACTGGTTATAAGGGAAACCACCCTCTGACCTAGTCCTGTAGACATGGGGAAGATAGAGAGCAAACAACCAGCCCCGGACATTCCCAAGAAAATCTCAACCTGGTGGGAGAGGCTACAGAAGAAGCCACCAGCTCCAACCATGACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225174 lncRNA downstream 2857 87362386 ~ 87363306 (-) True G198913
TU225176 lncRNA downstream 5006 87360648 ~ 87361157 (-) True G198915
TU225175 lncRNA downstream 6018 87358948 ~ 87360145 (-) True G198914
TU225204 lncRNA downstream 26557 87339254 ~ 87339606 (-) True G198942
TU225197 lncRNA downstream 34829 87331056 ~ 87331334 (-) True G198936
TU225242 lncRNA upstream 92121 87497115 ~ 87498590 (-) True G198975
TU225241 lncRNA upstream 94560 87499554 ~ 87500280 (-) True G198974
TU225294 lncRNA upstream 143122 87548116 ~ 87548338 (-) True G199004
TU225295 lncRNA upstream 143578 87548572 ~ 87548793 (-) True G199005
TU225296 lncRNA upstream 146661 87551655 ~ 87551883 (-) True G199006
XM_036958150.1 mRNA downstream 106560 87170110 ~ 87259603 (-) False mical2b
XM_021575471.2 mRNA downstream 106562 87170110 ~ 87259601 (-) False mical2b
XM_036958151.1 mRNA downstream 106562 87170110 ~ 87259601 (-) False mical2b
XM_036958157.1 mRNA downstream 106563 87195674 ~ 87259600 (-) False mical2b
XM_036958159.1 mRNA downstream 106564 87198705 ~ 87259599 (-) False mical2b
XM_021575577.2 mRNA upstream 87607 87492601 ~ 87496745 (-) True olfml1
XM_021575590.2 mRNA upstream 113926 87518920 ~ 87543745 (-) True syt9b
XM_036958296.1 mRNA upstream 160334 87565328 ~ 87688247 (-) False LOC110498902
XM_036958288.1 mRNA upstream 160334 87565328 ~ 87689612 (-) True LOC110498902
XM_021575622.2 mRNA upstream 397068 87802062 ~ 87854858 (-) False kiaa1549la
TU225173 other downstream 39694 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 462207 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1402498 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 1522670 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 2201843 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2972563 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4184218 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 4382193 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4993066 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile