RNA id: XM_036958266.1


Basic Information

Item Value
RNA id XM_036958266.1
length 3864
RNA type mRNA
GC content 0.51
exon number 27
gene id ppfibp2b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87366163 ~ 87492584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaagtgtatttatgTGTACACAAATAGCATACAGAAGATGTGATGAGTTGTAATATATTTATTACACGTGATTACAATAATTTGTTGCAGATTTGAGTTTACATGTCGTCTTGTTCACGTATTGGGAATGATGAGTAGCTAGAGCACATGGGCTGTGTAGTTTGATGGGATGGCACACCCTTAGAATCACATGATAGGTGATTGGTGGAGAGGCTTTATGATGAACACACTTATGGCGTTGGCAGCGCAAAGGCACAGTCGGTCAATGCGCGGAGCATCCCATCGCTGAAGACACCACTTACCACCAAGGTGGTCAATAGTGTATTTTGCAAGTTGCAGGGGAGGAATACGCGCTGGAGAGCAAGTCTCCGAAGTCGAGGATATTATAGGACACTAAGCATAGAGGCTGATGCAGTAGTCTGTCGCCATGGCCTCAGATGCAAGCCACATGTTGGAGGCGGCCTTGGAGCAAATGGATGACATCATTGCAGGCTCCAAGGCTGCAGCCGAGTACACCAACGGCCTGTTTGAGCTGGGCTCTCCAGGTAGCGCAGGGCCCCTGCAGGTTCTACAGCTGGTTGAGGACCTGAGGCTGGCCCTGGAGCTGCagcccagagaggaggagaggaacacccTGAGGGCCCAGGTCCCCAGCAGCACTGCTCACATGCTCATGGACTGGCTGGACATGGACAGGGGCTCAGACAGGGGCTCGGTTAACCTTCGCTCCCCGGTGAACAATGAGAGCTATCAGGAGCGTCTGGTTCGCCTAGAGGGGGACAAAGAGTTTCTGGTTCTCCAGGTAAGCGTGCTCACAGACCAGGTGGAGGCCCAAGGAGAGAAGATCCGAGACCTGGAGAGCTCTCTGGAGGAGCACCACCACAAACTCAACTCCACTGAGGAAATGCTACagcagGAGCTGCTGAGCCGGAACTCATTGGAGACCCAGAAACTAGATCTGATGGATGAGGTTTCCTACCTGAAACTGAAGCTGGTCGGCATGGACGAGAAACAGAACCACAACGACAGCAGCAAGGACCAGCAGAACAAAGCTGAGGGCTTACTGCAAGAACTCAGGCTCCTCAAGAGTAAAGTGGATGTGCTGGAGGGGGAGAAATTGCAGTATGAGAGAAAACTAAAGGCCAcgaagGTGGAGATAGCAGACTTACAGCAGATACTGGCTTCCAAAGACTCTGAGATCGAGGGCCTTCAGAGCCAGCTGGTCTCCAGAGGCCCAATGACCAATGAGAATCCAGAGAGAGACCAAGAATTCCAAAGGTTGAAAATGGGGATGGAGTCGTTGTTAGCGGCAAATGATGAGAAAGACCGTCACATAGAGGAGCTCACTGTTCTCCTGAGACAGTACAGGAAGATGAAGGAGGTGATGGCCCTCGCACAAGTGACCAGTGAGAAGCTCCTTGTGGGGAGCAGTGAGGAGGAACTGAGCGGGAGTCTGAAGATGAGAGCTCTCACACATAAAGCTCATTCAGACATCATCCGTTCAGAGATGTCTTCCAggtgctcctctcctctgttaaGGTCTTCCTCATCCTTCCAGAAAGAGCTGAACTCTAGTATCCAGACCTCCCTGGAGACGTCCATGGTGATGGTCTCCCCGAGCGATGCTGGCTGCTTCCACAACGGACAATGGTCCCAACCACAGATGCTTTCAAGCAGCCTGGAGGAGTTACAAAGCAGATCGTTACCAAAGCATGTAGTGGGTCAACCAGTTGAAGCGGTTTCAGAGAATCGGCACATGGAAATGAACAAATATCAGACCCTACCAGGGAAGCTATCTCGACCTGACATGAATGGGGATCAAGAGCAGTATGCCGCACCAGTCCAGCTGTCCCCTGACGATAGCGAGGACAGTGAGTTGAACCTAAGAAAGTCGGAGAGACTGGATGAGTCCACGCAGTCGGACCTGTCCCCCCTGTCGTCTGGAGTGGACTCAGGAAAGCAgtctcctgtctccccagagAACAAGAAGAACCACCTGGGCATCAAGAAACTCTGGGGGAAGATTCGGAGGACCCAGTCTGGCACCCTGCAGAGAGAGGACCTTGAGCCTGGAGAGTTTAAGAGGGGGGGACTGAGAGCCACCGCCAGCCCTCGTCTGGCCCGGACTGGAGAGACATTGACCTCTGTGTGgGATTTGAAGACACCCTTCTCCAAGTGGACTCCGGAGCAGGTCTGTTGCTGGCTAGAGGAGAGTGGGCTGGACCAGTATGTGATTCTGGCCCAACATTGGGCCAATAGTGGGCAGACCCTCCTCTCCGCCTCACCACAGGACTTAGAGAAGGAAATGGGTATTAAGAATCCACTGCACAGGAAGAAGTTGCAGTTGGCCCTCAAGTCCTTCAGCACCAAAACGACTGAGAAATCCTCTGAACTGGACCACATCTGGGTCACACGTTGGCTTGATGACATTGGTTTACCTCAATACAAGGGTCAGTTTCACGAGGGAAGAGTGGACGGCAGAATGATTCAGTACTTGACAGTGAATGACCTCTTGTTCCTGAAAGTGACCAGTCAGCTCCATCATCTCAGTGTGAAGTGTGCTATCCACGTCCTCCACGTCAACAAGTTCAACCCCAACTGCCTGAAGAGAAGACCTGGAGATGAGAACAAGACTTCTCCCTCGGAGGTGGTTCAGTGGTCGAACCACAGGGTGATGGAGTGGCTTCGCTCAGTGGACCTGGCGGAATACGCACCCAACCTGAGGGGCAGCGGTGTGCACGGGGGCCTCATCATTCTGGAGCCTCGTTTTAACTCAGATACCCTGGCAATGCTGCTGAACATCCCCCCTCAGAAGACCCTGCTGCGACGTCACCTGGCCACCAACTTCAACATGCTGGTGGGCTCCCAGGCTCAGCAGGAGAAGAGGGAGTTCATGGAGTCTTTAGGCTATGCTCCGCTCAGCACCACAGCCAAAGTCAGGCCAAAGAAGTTGGGCTTCTCAAACTTCGGCCACCTGAGGAAGAAGAGGTGTGACGAGTCAACAGACTACATTTGCCCCCTGGAGGCGGCCCAGGTTCAGGCGGTGCTGAACGGGGCCCACCGGCCCTACTCCGGCTTCAGGGGCCTCAGCCCCATCCtagacagagacccagacagacgGCAGCAGATGGCGGTGACAGAGGGGCCCGTGCTGCAGATAGAAGCTCTGTCTGAGGGAATTAACCAACTCACGTATTTGCTTAGCCGAGACGAGGTTCTGAAGGAGATGAGACGCCCTCAAACAGCACTAGTCTGAGAGGATGCCACGCTGGCCACGCTAACCAACACAGCCAATCAACCAAGGGAAAGCGCGGCCTCATACCAACCCAAACTCAACGTAGGGTGCTTTACCAGCAACCTCAACTGGCCCTTATCTCATCATAATACAGGACTATAATGAACACTACTTCTGTATTAGTGACAGAAACACAATGAACGTTGAAGCCATTGTCTTACGTGTGTCATTGGAGTGTAGCTCTTTCAAACATAATAGTGAATAGTATGTACTTTGTCTTTTTGGTGAAAAGTATAGGCCTACCGCAAGCCACTTAAACATGTATTAAAGTGTTATTTTCCCTACGTAATCTATTTCCCTGTAATATTGACCAAACTCTATTATTTTGTACAACATATGTGCATATCATATTTTACAACTTGTTTGTTacgtatactgaacaaaaatataaacacaagatgcaacaatttcaaagattttactgagttacagttcatataacatCAGCACACGTGACCTGCGGTTGTTAGGTCGGTTGGatctactgccaaattctctaaaacaacattggaggcggcttacggtagagaaatgaacattcaaattctctggcaacagctctgtggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225174 lncRNA downstream 3988 87362386 ~ 87363306 (-) True G198913
TU225176 lncRNA downstream 6137 87360648 ~ 87361157 (-) True G198915
TU225175 lncRNA downstream 7149 87358948 ~ 87360145 (-) True G198914
TU225204 lncRNA downstream 27688 87339254 ~ 87339606 (-) True G198942
TU225197 lncRNA downstream 35960 87331056 ~ 87331334 (-) True G198936
TU225242 lncRNA upstream 4531 87497115 ~ 87498590 (-) True G198975
TU225241 lncRNA upstream 6970 87499554 ~ 87500280 (-) True G198974
TU225294 lncRNA upstream 55532 87548116 ~ 87548338 (-) True G199004
TU225295 lncRNA upstream 55988 87548572 ~ 87548793 (-) True G199005
TU225296 lncRNA upstream 59071 87551655 ~ 87551883 (-) True G199006
XM_021575564.2 mRNA downstream 995 87364250 ~ 87366299 (-) True LOC110498882
XM_036958150.1 mRNA downstream 107691 87170110 ~ 87259603 (-) False mical2b
XM_021575577.2 mRNA upstream 17 87492601 ~ 87496745 (-) True olfml1
XM_021575590.2 mRNA upstream 26336 87518920 ~ 87543745 (-) True syt9b
XM_036958296.1 mRNA upstream 72744 87565328 ~ 87688247 (-) False LOC110498902
XM_036958288.1 mRNA upstream 72744 87565328 ~ 87689612 (-) True LOC110498902
XM_021575622.2 mRNA upstream 309478 87802062 ~ 87854858 (-) False kiaa1549la
TU225173 other downstream 40825 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 463338 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1403629 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 1523801 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 2114253 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2884973 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4096628 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 4294603 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4905476 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile