RNA id: XM_021575642.2


Basic Information

Item Value
RNA id XM_021575642.2
length 7041
RNA type mRNA
GC content 0.47
exon number 22
gene id kiaa1549la
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87802062 ~ 87854859 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGCGTCACGCCGCGACGTGATATTTTTTCTAATGAAATGACGGGTTCGACTTGTAAATATTCCAACAAGGTAGCATAATTGATCACTTCTGCGTTTTGAACGGGAGCCGTTTTCCGTCCGAATCATTAAATGTACTTCTATGGTTATGAGTGGATCTTAGATTGTTCGTAAATAATAGCTTATTACGCGCTAGCAGGTCGACGTGGTGCATGGACTGTTACCTCCAGACGCATCACACACAAGGTTCAATGCTGCCGCTTTCTGTCAACCTCGGGGAGAGGCTTTCGGAGAACATCGTCCGCAGTGAAGGatttatcaaatgtatttgtcaataTTAAGACTGTTAGATGTATCAAGGATAAACAAATGGCTTCAAAACATGTGCGTAACAGCCTCGATGATTTAATTGTCAGCGGAATAAACAATGCTCCCGCGATTGGCTCGATTGAATGGATAGGTGTGGGAATGGGAGCCACCTTATGTTTCCAGAAAAACGGAAAGACATTGGGACTGGATCGAATGTggactaaatatattttatcaGTTGGAATGGTTTTGCTTTTAATGCAGTCTGTCCTAGCTGCTGATGATGAAGGGCACTACAACGGGTCATCAGGACATGCAGCTTTGCCTCAGGACCCAGCTGTGCCCTCTAACCTCTCTGCCAGGGCAACGCCAATGAAGGATTGGCTCCTGGGCGCTCTAGCCGTGCCCACAGACCCATCAGGGGCGACAGCAGAGAGCACCAGAGAGCAGCCAGGGTTCTCCTCTGTACTGACCCTGCTAGCTAGCTCAGACCAAGAGCCACAGACCCCAGTGCAACCATCAGTACTAGCTAATGCCTCCTCAGCAATCAACAATGACAATCAAACAGCAGGAACAACAGATCCTTTGTCGTTAGCCCCTGTAGCCAACAGCACCTCAAACACCAGCTCAGAGGAGGCGGTCAGCAGTTTGCCTGCAAACCCAGATTTACCAACAGTCCCAGTGTCCTCTCTGGCCACCCTGGGGGAGGGCGACTCCACCCTCCCAGACAATGTGACTAGTCCTTTCTCTACTCACACATGGAACACCACTAAACCTGCAAGGGCTGACAACAACACCACTATACCATCCACCACAGCGGCACACACCAACCCAACACCAGACACTGTGACCAATGACAGTCTACAGCTCACGACTGTGACCACCACAACCGTCACGCCCCTGACCGTGACCACCACAACTGTGACACCCCATACCACGACAGCTTTGACCACAGAGGCGGTTACGACCATACCCCGGACCACTACGACCCCACAGGAAGTGACCACCTTCCAAGAAACTACATTGATGACAACCACAACTGACCCACCCACCACGGCGACGACAACCACAAGTGCTCCCACTACCACGAACGCTCCCACTACAAGTACAACTACCACTGCACCGACCACCACTTTGACtgtccccaccaccaccacagaaaccACCCCGGGACCAACCACAACGGAATCTCCTCCCATCAGTGCTGAAGAGGAACGTCAACCATGTAACATCACTGAGAAGACATGGGTCAAAACAGTGTTGTCTATGCAGTTGAGGAGGAACAGGCTTGATATCATTGTGAGGCAGAATCTGTCTAAAGGACTCACCCATGCTCTACAGAGGGCCTTCAATGACACCAATGTTTATGTCCAGATTGAACGGGATCTCTGCAGCCCTCATAATGTCACCCTTGGGTACTATGTAGCCAGTGGGAAAATGGTCTACATCGCATCTGTGGTGGTGGAGACAGTGAAGGCTTATGGTTTTGACAAAGTGCTAGCAGACATCCGGCAGCACAGTCCTCTGGTGATGGCTGTTCTGCTCCCTGTGGGCCCCTGGGCCCCTAGCCTCAGTGTCCATCTGCAGCTCAAAACAGTTCTCAGGTTCGTAGGTCCAGCGGACAGCATCAACTCCTGCAGTTTTGTTCAGATGATGGAACAACGGCTGGAGAATGCGTTTGAGGAAGCTCAGGACAAAGTGATGGAATCTTACAGCGGGCTTTCTGTTGAGATCCAGAGCACCTCCCAAGCGATTGGCTCTCCTGCCGTATCTCTGGTCTATGTGGTCAAGAACCAGGCCGCGATCCTGAATGGAACCGTCTCCAGCGGTCTCCTGAATCAGCTGACCGCAGAGTTGGTGGGCTACTTCCTCTTCTTCCCGCCCCTTGTTATTGCTGAGCCACTAGAATACCACAACCTCAATACATCCACTGCCACCAAGCACTACTGGGTGATCACAGTAATTCAGGATGTTGACAGCTCATCTCTGGAGAGGAATTATCAGAGCTTTGCTAGTTTAATGGAGCAGCGGCTGGCTGAGCTGTTTTTGGTGGCTGGGCGTCAGGGGAGCCAGGGGAGCCGCTTTAGAAGGGCCACCACTGTTGGGGACTACACCGTCCAGATGGTTGGTATTCGTCGGCTCCCTGGGCCAAAGAATCCTGCCGAAATGACCTACTATGCCCAACTGAACGGTGCCCCCATAACTGGCACCACTGCAGCCAAGACTCTCAGTACCTTGGATTCCCAAACCATGGCTCTAACCCTGGGATACTTTATCCAGCGCCAAGCCGATCCTGTGGTAAAGGTCCCGCCGGCCAATCTGTGGATCATGGCCGTGCTGACGCCTGTTGCCCTGGTGatggttgttgttgtcatggtcaCCGCCATCCTGTGCAAGAGGAACAGGGTCATCTTCAAGACGGGCGCTTTCAGGAGCTTCAAAACACGCTCTAAGCCTGTGCAGGGATTTGACTATGCCAAGAAGCATATGGGCCATCAGCAAGGTGAGGAGACCATCTCTGTTACCAAGGAGACGCTGGTCCTGGGCCTCCCGGTGAGAGATGCCCCATTGTCATTGGACAGGAAGGTGCACCAGGATGGGGCCGCTTCTAAAAGACCCCCTTCTGCTGACATCATCCACAAAGGGTTGCCAAGCGAGGACGGCTCAGTTACAAGCAATGAATCCGGGAAACTCAACACGGGCAAGAGCTCGATGGTACGGAGGCCTGCGGTACAGAACAGCGCCAAGGAGGATCTACTACACAAGAGGaacgCAGATCCCTATGAGGACCACACTGGCTCACTGCGACTCATCACCATCAAGCCAATGGCGGCCCAGCCCACCTACTCCTACCCATCCTCCTCCAGTCACAGCCAGGACTCAGTCGTCCTCAATGGGGAGGCAAATGTGGGGCTCAAGCAGAAGTCCGACATCGAACACTACAGGAACAAACAACGGCAGAAAGCCAACAGAAAAGGCTACTGTGATTTCCCTGTTACAGACAATGGCATCCACCCATTCAACCCCAGAGAGAGGCACAGCAGGCATGAGAATGCCAAGGAGCCAATGACTGCTGAGGAGAAGAGGGCATCCTATGCAGGATGCCACATCAGGAGGCATCCCCCATCCAGAGAGCCAGCCTACTGGAGCCGTCAGTCCCTGGCTGCCAGCAGCCCTGGCCCCGTGGAGACGGAGATGGACCTGCTGGTCCTCAGGGAGAGGTCTAGAAGAGGGATCCGCAACAGCGGCTATGACGTGGAGCCGCTTGAGGAGACCAACGTGGACCGACTGATGAGCTCCCTGGGTTATGGTGGAAGCCATCAGGTCAAGGGTCTCTCAGACTCGTCCACTCTGAGCTCTCAGCCTTCCATCGGCGAGGTCCGTCAGCAGATGCAGCTCCTGCTGGGTAATGCCTTTGGGCTGGCCCCAGATGAGGCCCTGccctccaaccaccaccacccccacattCACCCCCACCTCCACAGTTCCTACAACCCCAGTCACACCAGCCCCTACTCCGAGGGAGTGACCAGTGCCCCTGGCACCATGAACCACCCATGTGGAGGAGGCCGCCAGCATGGGTCTGCCTACGGGCCGGAAATGCACCAGTGTAGCTTACCCAAGCCTGGCTTCAGGTTCACTCAGCTTCCTGACATGTGCGTTGGACCTCCGCCCACTCTGATCCCCTCCAGACCTGGACCCCCTCCCGGGACCTCAATGAGGCGTTCTACACCCGACATCAGCCTGAAACCTCGCATTTCTGAGGCTTCTGAGATACAGAATCAGCACAATGGTGCCACCTACCTGCCTATCAACAGAGCGCCCTTCCCTGCTGTCACTGTTGACCAGTCCATGACCAGCTACTCAGGAAACCCAATGACAGCAGTCTACGCCATATCAGCCAACCACCCTGGTTACTCTGACTACTTTGTCATGTCTCCACCATCGTCGTACGGAAGCCCATCTTGGATGTCCTACCCACCGGAACCTGAGGACATCCCACACCAGTGGAatgatactgtaaatactAACCCGTGTCATTTAGAAACCATTTGTTGAGATTACCTGATCTCTGGCATTGAGTGGAAACAGCATATATCTTGGTGTCCTATCGGTTGGGCAGTAGggcctccctccctcacagtgaGTACCCCTGGACTAGAGCACCCTGCCCTCACTGTCACCCCTGGCACCTGCTGGCCTCTGGCCTGCCTCCTCAGCCCATCCAGGCCCCCCATGGTCTCTGAGCCCCAGGTCACACAGGCCTCACAGCCTCCATGTCAACTGCCACCAGCCAGCGGAGGATGGCCTAGAGTAGAGCAGCAGCATGGTAATGCCACATACAGCCTCTGCCCTGGTCCACACCATCCAACGACAGAGCTGGACTGACTGTGCTTTTTGATGATCCAAATTCTTTAATGGAAAGAAGAGTTTTACCTACTAAACTGATGGTTTATGTGTATtttttaaaatgacaaaaaaaaatagtATCTAACTCGTCTTGAGCTGTTTCAGTTTTTGGATATTTGTGTGCTTTGTCATTTACTTTTGTGCATTACTTCTTATTTtgaatgagtaaaacatttaatgagTGTATCTTGTGCGCTCACCTTAATTTAAGGAAGACATTTGTGCAAGAAAAGCTTTGGTGTGATTGGCATTGTCATTCTGTATTTCTGAAATGTACCCATGACCTTCAACCCATCAGATTACAGTAAAAAAGAAAAACACCTGTTCTGTCATTCATATGTTAATGAGGTGGGTCTACTAACCATGATTATGAAAAGCTGAATAGAGTCATATATTGCAGCACACAAATGATCTTACAATGGTTCTTTACTTGCAAGTGTTattatgtattttgtattttgagaTTCTGACTTATATTGGGTCATATTCATTCACTGGACAGAGTGGTGATAATCAGATGTGTTGGATGGGCCACAGGAGTATTTATTCAATTTATTATGTAACATGACAGCATTAATTATTGAAGAGACTTTTACAAGCAGTGAGAGAGATATTTTCTGTGTATATTTTGACACAATTTTCTTGACATGTTGACTTGCTTTAATGCATTTTGAATTTGAAGGATGGTCAGATTGTTTTGAATCTTATTTTCAAATATGTCAAGTGTACCAACACTTAGATGTCTAACTACCAGGATCATCTAGTGTAAAACATGACCACCTTTCAAATGTATTAATTCATGTAAGTGCATATGCTGGTATATGCATATACACAAATACTCACTGGGTCATAACATAAGCAAAATGAAGGATAATGCTGTGTTTTACTAGTGGATTTCAAAACAAGGATAATGTGATGGCTAGGGCTCTTTACCATGTATTTGCTATTAGTTGAGTTAATCAGTGCAGTTTAGTGTAGATCAACAACCACCAAAACATGTAACCAGACTTGATTTGTATTACTGTGATATTGCTGATATTGAATATCTAATAATGACATAGCATTGGAAaggtttttacatttaaaaatggtGACAGAATCAGGTTTAATGTGAtgataaaaaattaaatacagtttGATCTATCACAATGTAGGGACATTATTAGTTTAGTCTGATATTAGATGAACAGAGCACTTTCTCATCCTGAGTTCCTGACCCCACAAAACTGCAGTATCAATGCAAATACTTTGTTAAGCATGCAATATTAATATCGAAAATATTAGAATAACTGCTTTTTAACAAATTATGAGTCATACTCAAAATTATAAAAAGATGCAAATACATAGTCAGTATCTAGTCCATTCGTTTGACTGGCTAGATGTCTTCAAATACATAGTCAGTATCTAGTCCATTAGTTTGACTGGCTAGATGTCTTCAAATACATAGTCAGTATCTAGTCCATTAGTTTGACTGGCTAGATGTCGTCAAATACATAGTCAGTATCTAGTCCATTAGTTTGACTGGCTAGATGTCTTCAAATACATAGTCAGTATCTAGTCCATTCGTTTGACTGGCTAGATGTCTTCAAATACATAGTCAGTATCTTGTCCATTAGTTTGACTGGCTAGATGTCTTCAAATGCATACCAACTGTTTCTACCTagtttgaaaaaatatatttaactaTTTTTCTACAAAAATATGAAACCATTATTTTTACGTTTAAGCGTAATATTCCAAAGGAAGTATGATAAACCATGTAAAAAGCCCAAATGCAAAGACATTTAGAGAATCTGTGTGTTTTGCTCTGTAATAATACATAAAATGTCTACTTTTTCTGCTCTACACATACACTGGTAAAACATTCTTCATCTACTAGATTTAGTCACAGTAAAGTTTCACTAAACAATGTTGATGAGACTTATAATTCAAAAGGAGCCTATGAGTTGAGCATCTTTGCCTTTATCAAGCACAAACAATCTGGTTGATGCTTGGAATCGTCGTCATTGTAACTTGTATCGCTAAGAGACAAAAGGCACTCCCATTTGTTGAAAATAATATCATTGGTATGTTCAGTTACCCATATTTGAAGCTAATGAAGGGGAAAATGTGATTGAGTTGAACAGTCAAAAGGAACACAATGAAAGAGTTGACATAAATTGATGTACTCCTGATGCTTCTTTTACCTAATTTCTCTGAGATTAAATGTGATGATTAGCCCTGGAGGTTTCTGAAGGCACAGCAGTTTGAATCATGTTATGAAGAATGCAGTTGAATGTAGTTATGCAGAATTTTGGTGAAATAAAACCCAATAAATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225599 lncRNA downstream 80494 87721060 ~ 87721568 (-) True G199267
TU225396 lncRNA downstream 96073 87705611 ~ 87705989 (-) True G199093
TU225395 lncRNA downstream 96971 87704868 ~ 87705091 (-) True G199092
TU225389 lncRNA downstream 103483 87698304 ~ 87698579 (-) True G199086
TU225361 lncRNA downstream 137747 87663786 ~ 87664315 (-) True G199063
TU225715 lncRNA upstream 64269 87919127 ~ 87931620 (-) True G199369
TU225727 lncRNA upstream 79517 87934375 ~ 87934585 (-) True G199378
TU225754 lncRNA upstream 106371 87961229 ~ 87961440 (-) True G199405
TU225755 lncRNA upstream 107420 87962278 ~ 87963033 (-) True G199406
TU225756 lncRNA upstream 111815 87966673 ~ 87967599 (-) True G199407
XM_036958288.1 mRNA downstream 112450 87565328 ~ 87689612 (-) True LOC110498902
XM_036958296.1 mRNA downstream 113815 87565328 ~ 87688247 (-) False LOC110498902
XM_021575590.2 mRNA downstream 258317 87518920 ~ 87543745 (-) True syt9b
XM_021575577.2 mRNA downstream 305317 87492601 ~ 87496745 (-) True olfml1
XR_005038648.1 mRNA downstream 309478 87367892 ~ 87492584 (-) True ppfibp2b
XM_036958353.1 mRNA upstream 4499 87859357 ~ 87900421 (-) False LOC110498926
XM_021575654.2 mRNA upstream 4500 87859358 ~ 87900421 (-) False LOC110498926
XM_036958341.1 mRNA upstream 4500 87859358 ~ 87900421 (-) False LOC110498926
XM_036958350.1 mRNA upstream 4500 87859358 ~ 87900425 (-) True LOC110498926
XM_021575668.2 mRNA upstream 52641 87907499 ~ 87911415 (-) True LOC110498933
TU225173 other downstream 475593 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 898106 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1838397 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 1958569 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 1751979 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2522699 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 3734354 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 3932329 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4543202 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile