RNA id: XM_021575654.2


Basic Information

Item Value
RNA id XM_021575654.2
length 3906
RNA type mRNA
GC content 0.56
exon number 15
gene id LOC110498926
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87859357 ~ 87900425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGGGTGGGGAGGGACTCAGCAACAACGAGCAAAGTGCTGGAACAGTGCGGTCTCTGGAACAACTGGTCCCCACAAAGGTTAGAAATATGGGTTTCGTGGCCCTTGAAACGAAAACAAGAGCCATTTTTCCCCGAAACTGGCAGTTGTTAACTACGCAGTGGACGAAGACTGGTTTCATTTAATGGTGTAATACGTATGACCTCACACGTTTTGGTCTACCCACCACATGTTTATCAAACCCAAACAAGTGCCTTTTGCAGTGTGAAGAAACCCACAGTTGAGCTCAATCACTGTGTTTTTCATAGGAGGACCCTGCAGACCTATATAATTGGAGTAAACCTTGGCATTGCTAAGCCTACCAATATCCTCCTTTCAATTATCTTTGCCGGCAGCTACATCCCTGAAAGAAGTACACAGGGAGTTGCTCCAAAAAAcgaccccctcccccccctgtCAAGGCAAGGGTCCAGAGAAGCTGAGGCTGCAGGGGGACAGCAGTGTAGGTGCAGTCACCCTGGGTTTCGGGGACTGTGGCTAGAGAAGCAACAGTGAACAAGGTGAAGGAGGTAGTTCAAACCTCCTGTGCTCTAATTGGACAGCTTCCTGCGATGTGGGCTGAACTGTAAGGGTGAGTGGAGAACAGTGGGAAAGCCATGCAGATAGTGGAGGACATTTCCATGATACCTGCCATGTTGCAAACTAATGTAGGGAACAAGAACACCATGGGGGGAGTGTCCCCCAAACAGAATGTTGGTGGGACTGGGGCTCGTAATGCGGCAGGGGATGGGGACTACCAGTTGGTGCAGCACGAGGTCTTGTGCTCCATGAAGAACACTTATGAGGTGCTGGAGTTCCTAGGTCGTGGCACCTTCGGACAGGTGGTGAAGTGTTGGAAGCGAGGCACAGGGGAGGTTGTGGCTATCAAGATCTTGAAGAACCACCCATCGTATGCAAGGCAGGGCCAGATTGAGGTGGGCATCCTTGCCCGTCTGAGTGGGGAGAACGCTGATGAGCACAACCTGGTGCGGGCATTCGAGTGCTTCCAGCACCGCAGCCACACTTGCCTGGTGTTTGAAATGCTGGAGCAAAACCTCTATGACTTTCTCAAGCAGAACAAGTTTAGCCCGCTGCCATTGAAGGTGATCAGACCGGTCTTACAGCAGGTGGCCACTGCGCTGAAGAAGCTCAAGAGCTTGGGCCTGATCCACGCTGACCTGAAGCCGGAGAACATTATGCTGGTGGACCCGGTGCGACAGCCTTACCGGGTGAAAGTGATCGACTTTGGCTCGGCCAGCCACGTGTCCAAAGCCGTGTGCTCCACGTACCTGCAGTCACGCTACTACAGGGCTCCAGAGATCATCCTGGGCCTGCCGTTCTGTGAGGCCATCGACATGTGGTCCCTGGGCTGTGTCATCGCTGAGCTCTTCCTGGGCTGGCCCCTCTACCCAGGAGCACTGGAATATGACCAGATTCGCTACATATCTCAGACACAAGGGTTGCCAGGGGAGCAACTGCTGAACGTGGGGACCAAGACTCCCCGCTTCTTCTGCAAAGAGTCTGACTCGCCTTATGCTCCCTGGAGACTGAAGcTGACAGGGGAACATGAAACTGAGACTGGGATGAAATCCAAAGAGGCCAGGAAGTACATCTTTAGCAGTCTAGATGACATGGCACATGTGAATCTGGTGCTGAACATGAAGGGCAGTGACTCGTTGGCGGAGAAGGCCGACCGGAGGGAGTATGTGGGCCTGCTGAAGACCATGTTGCTAATTGATGCTGAGAAGAGGATTGCTCCCTCCGATGCCCTCAACCATCCCTTTGTCACCATGCAGCACCTCCTCGACTTCCCCCACAGCAATCATGTTCAATCATGTTTCCAAATCATGGATGCCTGTCAATCACGGCCCAACACGTACAACACACTCAACCGCAACAAAGCCCTGTTCCCCAGACCCTCAACCAACTCAGCTGGACTGCCGATGGCCTTCAGTAAGATGGGATCAGTTCGCTCTCAGGCTTTGACGCAATCTGCTCCCTCTGTGATGCATCCTGGGATGCTGCAGACAGGAACCAGTCAGTTTGGATGTAATGACTCCTTTCAGCCAGCCCTCATCCTCTGCCCCCCAGCCATACAAGGTAATCCAAACCAGCCAGGATATACAGTTAGGATGGAAAACACAATACCGATGGTGACCCAAGCCCCTCCCATACAGCCTTTACACATGCGACCCGGAGTCATAGCACAGCAACCGTGGTCAAGTAGAAACCAGCAGATCCTAATACCAGCCTGGCAGCAAGTGGCTCCCCCTCCCACCACTATGGCTTCTGATACTGCGGGTGGCCCACAGAGGCTCAGTGACTGGGGGAACGTTCGGCAACACAGCAACCATTACAGCAACATGATGCAGCCTCTTCTAACCAACCAAATGGCCATGTCTGGTCCACAACCAATCAACATTGGCATTGCACACGTGGTGTGGCCACAGCCGCACGCCAACAATAGGAACCGGCCCAGTCAGAGCCGCAGCATGCACTACTCCCACAACAATGGCAACATCCAAACCTCAATGTGCCGCTCTCCAAAGATGGCCGACCGTGTTAGTcacacaggaggaggaggagatggttccCGTGGGGAGAGGCCTGAGGTGGAGGTTCAGCAGGAAAGACGACATGAGGAGGAGGTGAGCTGCTGTAAGGCAGTGGAGGATGAGAGGATAGACATGTCCCACCAGCAGCGAGAGTCTGTGGTCATCGACGACCTGCCCAGCCCCACCATCAGCGTCATCAGCAGTGACACGGACGGAGAGGAGGGTTCCTCTTGCAGGTTCAAAGGCAGCCCTGACTGCGAGGCGTGTAAGAGCTCTCTGAACATGGAGCGGGTGTGTTCCCTCAGCAGCCCAGACAGCACCCTGAGCACCAGCTCCTCTGCCTCGGTGCAGTCCAGCCCGTCCCCCTGTAAGAGGCCCAACAGCATGTCTGAGGATGATGGTCATGAGAGTGGCTGCGAGACGGTAGATGGTTCCCCTGCCTCGGACTCCAGCCGGAGCCAGAGCCCCTACCTGGAGAGCCGCTACCTAGGCAACCACAGCCATCAATCTCTGAGCATGAGGACGAGTGGCATGGCCCCCCAGAAGGAGCCCAGAAATCCCCCTGTGAGAACCATGGTGGTGCCACCTTTGAAGGTGGTgctgaacaacaacaacatggacctGCACACAGACCGAACGGTCTTCGAATCCTCATGCCAGTCCAAAAGGCGCTGTGCCCCTGGACGACTGAACCACCACAAGCCCCGGCAGCAACAGAAGATGACCACATTCCAGCAGCAGCCCCTGGGCTTCGGCCAGCCTCAGGTCCAGCAATACAGCTCCTGCCACAAGGAATGGAACGGAAATTATGGGCTGCATCGGCGGCCGCACGCTTACATCCCTCCCACGGTACACGGCCACGCTTTCACCCCCACCCACAACTCGGGGCCTCACCCCCAGACCACCCTGCTTTCCTATCCTCCCACTGCGCCCGTCGCCCACCTCCTGGCCTCGCCCTGCGCCCAGCGGCCCGTCCTACAACCCGCCTTCGGCATCTCCCACCCTGGCAGCATTGTCCACCAGGTGACCATGGGCATCAACCACCGCCTGCTGCCCTCACCCACCATCCACCACCAGGGCCAGTTTGGGCCCCTCTTTCCCCCACACTCCTACATCGCCTCGCCAGCCTATACAGGCTTCCCCCTCAGCCCCACCAAACTCAACCAGTACCCTTACCTCTGAGCACCAGCCGCCCAGGGCCATAGGCCAGCAAGGGCAGCCAGAAGTGACAACGTTAACCAAGGCCTTCATCCGTCATCTCTCAAGTTATGACAgagaaagacccccccccccccccccccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225664 lncRNA downstream 28117 87828180 ~ 87831241 (-) True G199329
TU225599 lncRNA downstream 137790 87721060 ~ 87721568 (-) True G199267
TU225396 lncRNA downstream 153369 87705611 ~ 87705989 (-) True G199093
TU225395 lncRNA downstream 154267 87704868 ~ 87705091 (-) True G199092
TU225389 lncRNA downstream 160779 87698304 ~ 87698579 (-) True G199086
TU225715 lncRNA upstream 18706 87919127 ~ 87931620 (-) True G199369
TU225727 lncRNA upstream 33954 87934375 ~ 87934585 (-) True G199378
TU225754 lncRNA upstream 60808 87961229 ~ 87961440 (-) True G199405
TU225755 lncRNA upstream 61857 87962278 ~ 87963033 (-) True G199406
TU225756 lncRNA upstream 66252 87966673 ~ 87967599 (-) True G199407
XM_036958314.1 mRNA downstream 4499 87802062 ~ 87854859 (-) True kiaa1549la
XM_021575622.2 mRNA downstream 4500 87802062 ~ 87854858 (-) False kiaa1549la
XM_021575632.2 mRNA downstream 4500 87802062 ~ 87854858 (-) False kiaa1549la
XM_021575642.2 mRNA downstream 4500 87802062 ~ 87854858 (-) False kiaa1549la
XM_036958288.1 mRNA downstream 169746 87565328 ~ 87689612 (-) True LOC110498902
XM_021575668.2 mRNA upstream 7078 87907499 ~ 87911415 (-) True LOC110498933
XM_021575844.2 mRNA upstream 284607 88185028 ~ 88205473 (-) True dnajc24
XM_021575949.2 mRNA upstream 668930 88569351 ~ 88574203 (-) True LOC110499068
XM_021575980.2 mRNA upstream 730058 88630479 ~ 88642157 (-) False LOC110499075
XM_021575988.2 mRNA upstream 730058 88630479 ~ 88642294 (-) False LOC110499075
TU225173 other downstream 532889 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 955402 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1895693 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 2015865 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 1706416 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2477136 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 3688791 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 3886766 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4497639 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile