RNA id: XM_036990369.1


Basic Information

Item Value
RNA id XM_036990369.1
length 2292
RNA type mRNA
GC content 0.51
exon number 9
gene id wt-t1b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87946473 ~ 87966277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGGGTCTGTATTTGAGGTTTGTGGGCTCTAAAGAAAACAGACGCATGAGTAAAGGAATAGAGggctacccccctcctcctctcttcctctcccactctttctcctCCATTGACAGAGCTGAGAGAACGCTCCCCAGGTTAGACATCCAGACAGACCTCTCTCCACTACATGGACTATCTACCACAGCACACAAAACAGACACGTTCAATTGTTTCGACTTTCGTTTGGGGGGAATTGTGTGCGTTTTCCTTTAAAAAAGCTGTCTTTCAATGCAACAATGAAGCTTTGTTGGACTTAAGTTTCCACAGAACCAGGAGCCGGTACATCAGAACGCCGAAGAAGACTTAGGTCCGTTTTCAGAGCGATCCTGTCGGGTTTTTGGACAGACTGGTTTCCAGGTGCGGTTGCTCCAACAGAGATGGGCTCAGACGTACGTGACCTCAACGCCCTGCTGCCCCCGGTGCCAGCCCTGCCAGGGGGGAATGGGAACTGTACCCTGCCCGTCAGCAGTGCCCCTCAGTGGGGCCCTGTACTGGACTTCCACACTGGCGCCCCCTACAGCTCGCTGGCCCCCCACTCCTTCATCAAACAGGAGCCCAGCTGGAGCTCTGGGGATCCCCAGGAGGACCCTCACTGTGGCCTGAGTGCCTTCACCCTGCACTTCTCTGGCCAGTTCACTGGCACAGGGGCCTGCAGGTACGGGGCCTTCGGGGCCCCCCCTCCACCCAGTCAGCCCCCACCAAGCCAGCCAAGGATGTTCAGCAACGCACCCTACCTGACCAATTGTATGGACACCCAGCCCTCTTCCAGGAACCAGGGTTACAGTGCTTTCGATGGTGCCACTAATTACGGTCACACTCCCACACATCACTCCCAGTTCCTCAGCCACTCCTTTAAAGATGAAAACTCCCTAGCTCAGCAGACCAGTATGGGTGAGCAGCCGTATTCTGTCCCTCCACCCGTGTATGGATGCCACACCCCATCAGACAGCTGTACAGGCAGCCAAGCCCTACTGCTGAGGAACCCTTACAACAGTGATAATTTATACCAAATGGCATCTCAGCTGGAATGCATGGCATGGAACCCTGTTAGCACGCTGGCTTCCACCATTAAGAGCCATGCTACGGGTTATGAAAGTGACCCCAACCCTCCCATGGTGTATAGCTGCAGCACCCAGTACCGCATCCACACCCACGGCATCTTCAGAGGCATGCAGGATGTCCGACGGGTGCCAGGTATCGCTCCAGCCATTGTTCGCTCAGAGACCAATGAGAAGAGGCCATTCATGTGTGCATATCCTGGCTGCAACAAACGATACTTCAAGCTGTCCCACCTGCAAATGCACGGCAGGAAACACACAGGTGAGAAGCCCTACCAGTGTGACTTTACCGACTGTGGACGAAGGTTCTCCAGGTCAGACCAGCTCAAGAGACACCAGCGAAGACACACAGGGGTTAAACCGTTCCAGTGCGAGACGTGTCAGAGAAAGTTCTCGCGGTCTGACCACCTTAAGACCCACACCCGGACTCATACAGgcGAGAAGCCCTTCAACTGCAGATGGCCCAACTGTCAGAAGAAGTTTGCCAGGTCTGATGAGCTGGTTCGTCACCACAACATGCACCAGAGGAACCTGACCAAGCTGCAACTTGCCATCTGAGCCAGATCTGAACCAGACCACTCTGCTCTGCATACACACTGGCCTCGCTGCTCTCTAACACTCTGCCTACATGAGACTCTGAATCTCCATCTCGTTCAACGATGCCTGTAGCACAAAGGGGACACGCAGCAGAGCAGGTCTATCTACtagatagcacagccacaaagtaaaacATGACTGCATTGTAAAGATTCATAAAATCAACAATGAGCTTTTTAGTCTTaatttaaggtaagggttaggtataaGGTTTTaaagaagagaaattgtagatatttaaagaagagaaattgtaggaataggcggggtttattactttgtggctgtggtaacagAGCAGGAGGCTGACAGTCCTGTTCATCTGCATGTAGCTGTAGAGCCTCACCTACGCACAGTCCTCCAAACAGCCCCATCTAAGGACGGTCCTCTGTCCAGATGCTCTGATCCAGAGGGTTATTTTTAGTAAGACATTTAAAGAGGGAAAAAAATTGTTTCTGTCTCTTGTTGGTGTTGTATACATTAGATGTTAATGACTTTATGCCTTTTTTTTTCATTTGTAGTGTTACTTTGAGCAGTTTCAGATTAATTTATTATTTTATCATACTTTTGTGAATTAAAATATCTTTCACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225532 lncRNA upstream 86568 87855403 ~ 87859905 (+) True G199218
TU225480 lncRNA upstream 141787 87802075 ~ 87804686 (+) True G199174
TU225449 lncRNA upstream 183676 87762579 ~ 87762797 (+) True G199144
TU225443 lncRNA upstream 188804 87757264 ~ 87757669 (+) True G199138
TU225439 lncRNA upstream 193944 87752315 ~ 87752529 (+) True G199134
TU225740 lncRNA downstream 676 87966953 ~ 87967511 (+) True G199391
TU225918 lncRNA downstream 219153 88185430 ~ 88194347 (+) True G199542
TU226113 lncRNA downstream 290930 88257207 ~ 88257452 (+) True G199731
TU226122 lncRNA downstream 296355 88262632 ~ 88262883 (+) True G199740
TU226125 lncRNA downstream 299375 88265652 ~ 88266097 (+) True G199743
XM_021575680.2 mRNA upstream 14834 87912532 ~ 87931639 (+) False LOC110498941
XM_021575688.2 mRNA upstream 15016 87919127 ~ 87931457 (+) True LOC110498941
XM_036958231.1 mRNA upstream 592770 87351440 ~ 87353703 (+) True LOC118942948
XM_036958218.1 mRNA upstream 595274 87345598 ~ 87351199 (+) True LOC110498866
XR_005038646.1 mRNA upstream 604582 87340910 ~ 87341891 (+) True LOC118942946
XM_021575704.2 mRNA downstream 83821 88050098 ~ 88070895 (+) False LOC110498955
XM_021575713.2 mRNA downstream 85077 88051354 ~ 88070895 (+) False LOC110498955
XM_021575759.2 mRNA downstream 85078 88051355 ~ 88070895 (+) False LOC110498955
XM_036958395.1 mRNA downstream 86901 88053178 ~ 88070895 (+) False LOC110498955
XM_036958399.1 mRNA downstream 86901 88053178 ~ 88070895 (+) False LOC110498955
TU225538 other upstream 78506 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 409545 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 449738 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 795983 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 907237 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 1453492 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2480841 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2750665 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 3270748 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 3400060 91366337 ~ 91539373 (+) True mgat4c

Expression Profile