RNA id: XM_036958481.1


Basic Information

Item Value
RNA id XM_036958481.1
length 8284
RNA type mRNA
GC content 0.56
exon number 38
gene id LOC110499041
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88398637 ~ 88567065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGCGCTCTCTGTGGGGATGGGAATGGAAAGTGTGGTCTGTGCTGGTGTACGGTGTGCACGCGGAGTAACCAATTTGCAGCCTCTGTGCATGGATATtctgcacacaaaaaaacattttatttggGCAGTGCATCGTTGCTGCAGGCTGCATCCCTAACTAACCACCATGATTCAGAGACCAGCGGCCCCTGGGACCCAGTCTCTCCGGTCAGCCCCGTGGCCCATTCCCTCTGGTTTGAGACTGAAGAAGCAGAACTATTGTTGACCTTTTCTCCGCCAGAGCCCCAGAATCCTTTGGGAGGTATCGGATGTGATCATTCTTTTGGAGAAGTGGTGTATCCGTATTGACAACCTGGGAAGGAAGTAGGATATCACATGTGAAATATCTGGGATTTCCCTTCCCCTCAGGGATTATTGGGTTGTGGATATTGTGGAGTTGGGACTgagcagggaagagagagggtaTCTGGCATTCAGCCTGCTATGGAATTGGGAGCTGAGGGGAGCAAGCATCAGCACCAGCACCAGAGGAGGAAACCTGTGAGACATGCACTGGAGGAGCAGAAAAAGATTTACACGGACTGGGCCAACCATTACCTGGTGAAGTCGGGCCGTCAGCGACTGATTAAGGACTTGCAGCAGGACGTGACAGATGGAGTGTTACTGGCTGAGATCATACAGGTTGTGGCGAATGAGAAGATAGAAGACATCAATGGCTACCCTAAGAACCGGACACAGATGatTGAGAACATTGATACCTGCCTTGGATTCCTGGCAGCCAGAGGGGTGAACATCCAGGGGCTCTGTGCAGAGGAGATTCGTAATGGGAACCTGAAGACCATTCTCGGTCTGTTCTTCAGCTTGTCCCGCTAcaagcaacagcagcagcagcagaaggtgttgaaacagcaggcctcTCATCAGCCAAAGCACAGCACCCAGCCTGGACATACTCCCCATAGATCACCAGCCCCCTCTCACACCCACACCCACGGCTCCACTGCACCAGAACACAAAGCAGCATCAGATATGCTGTCCAGACTGCCAGGCCCCACCACGCGAGTCTCAGCCCCAGGCAGCGAGGGGAAGCATCGCGGGGCCTCCATCAGCAACCGCCGCAGCCAGAGCTTCAACCACCATGACATGCCCAAGTCCTCCAGCAGTGACAGAGAGAGAAGCACCACGGCCTCTCCCATCATGACTGAGCACGGTCTGTCTCCAGGGCCCATCAATggctgctcttcctcctccaaCCCCCAGCCCAATGCAGGCAACAGCAGCAAGCCCCGGAGGAGTAAGTCCCTGAACACCAAGCAcagcaccacctcctccatgctgtcCGTCAAACAGGACCCTCCCACCAGGCAGCCCGCGGCCACACCCCTAGAGGTCCTCCCTAAAGTCATCGCCCAGAAGTCCATGCTGGAGAAATTCAAGCTTTTCAACAGAAAAGGAGGCTCCAAGGCAGCTGGAGTCCTGACTGACAGGCCGAAAGGGCGGGAGACGGAGTCGATGGAGTCGCGTCCCACCAGCAGTGACCACCTAGAGGAGGCAGAGGGGAACTCCCGGCCCCCCAGTGTCATGGCGACCAGCCCCAAGCTTGCCCTGAAGGGCATTGCCCAGCGCACCTTCGGCAGGGCCCTCACCCCCCAGAAGAGCTCTCTGAAGactggggagaaggagaaggacaagGCCAGGCCCAAGGAGAGGGACAAGGCCCGGGAGGGAGGCTCCAAGCGGGGGTTTGTCACAGAGCCCAGGgatgacaccaggcaggaggGAGTAGGTTCAGACTCAGCAGAGCCCAAGAGGAACACTAAGAGTACCAGCCTCATCCCAAAAGGAGGCAAGGCTGGCAGTGGCAAAAAGGAGGTTTCAGCCCCAGCAGCACACAGCGGAATACAAAAGCCAGGGTTCAAGGCAGGGAAGACCCCGGGGGTGCCCTCTTCTGGTCGAGATGGAGACAGGCCCAGCAGTTTGAGGACCGGTGGGGGTGGTGGTCACTCGGTGCACAAGTGCCAGCTGGACAGCAGAAGCTCCAGCTCCTGCTCCAGCCTGGCCTCCTCTGAAGGGAGGtctcaccatcaacaccaccatacCAACGGAGCACCCCCAGTGGCCACCACAGCCAGCAACACCATCAGTGTCCAGCTACCTCATCCTCAGCAGCAATACAACCACCCCAACACTGCCACTGTTGCACCATTCATGTACAGGTCTCAGCCTGATGTGACTGGAGCAGACATGATGATGGAGGCAGCGGGGTCACTGGAAGGTCACAGAGAGACTGCAGCCATCAGCAAGTCAGCAGACAACTCCCATGAGGACCTCACAGGTGAAGACCCTGAGGCCAGGCGGTTGCGGACGGTGAAGGACATTGCTGATCTGAGGCAGAACCTGGAGGACACCATGTCCAGCCTGAGGGGAACACAGATTAGCCACAGcaccCTAGAGACCACCTTCGACAGCAGTGTCACCACCGAGATCAGCGGGAGAGGCATGCTCAACCTGTCTCCCCACCCCAACCCAGCGCTGCCCTGGCGACTGTGCCCCTCCAGCCCACGTCTGCAGGCAGGCGACGCCCCCTCTGTGGGAAATGGGTACGCAGTGGTGATGCGGGGCAGCTCCAGTGGCATGGTGAGCCCAGAGGATGGGCGCTACCTCCGCAGCAGGCAGACACCAGGACAGGAGAGTAACACTGTGTGTGACCTGTCAGACAAGATGGAAGAGCTGGAGGGCGTTGCCATAGAGACCACAGGGTACATGAGCGATGGGGACGTGCTAGGGAAGAACATCCACATGGACAAAGTCACCAGTGGcTACATGACGGACGGTGGGGTGGGCATGTACACACGCCGCCTCAAGCACCTGCCGGATGGCATGGCTGTGGTCCGAGAGACACTCCATCGTAACAGTTCCAAGGGCCAAGGGGACGCCACCGACAGTTGGGACGACAGCAGCTCGGTGAGCAGTGGGGTCAGTGACACTATCGACACAGATGACATCAACACCAGTTCCTCAGTCAGCTCCTACGTCAACACTCCGTCCGTCTCCTGCAAGGACGTAGAGGGACAGCTCCAGACAGACGCAGAGAAGCACCTGGCCATCGAGCAGAACTCTGTGTGGTCCGGCAGCGACGAGGTCAAGAGGTCAGACGGTGTCTCAGACAACGGGGTCAAAATGGAGTCGGGCTCCAAGTATTGCCGCCACCCCTCAGACATGTCGGACAGGAGCTCCTCAGGCCGCAATACACCCTCCGTGGCCCACACAGGCTCCTGGAGGCGGGGAATGAGCGCCCAGATGGGCGTAACCTCCCCCAGGACCAAGGCCCCCATCACGCCAGGCTGTGCAACTCTGAAGACCCATGTTACAGGTAAAACGGACGATGCCAAGGTGTCGGAAAAAGGCCAACATTATCTCTCTCCCCGGGCCAAGTGTAGCATGCAGCGCTCCCCATCAGACACGGGCCGCAGCAGTGGAGACGAGGCCAAGAAGcccccttcctcctccagctCCAGCCGTACCCCCACCACCAACACCTTTGGATTTAAGAAGCATGCAGGAGGAGGTATGACCATGGTGACAGCCAGCGGAGTGACCATCACCAGTGGCTCAGCCACCCTGGGAAAGATCCCCAAGTCAGTGCAGCTCCACGGGGGTCGGGGTCTTGGTCGCCAGGCCAGTGTGGATGATGGCTACCTACCTGTGAGCTCACACTCCACCCTGCAGTACCGCAGCCTCCCCCGGCCCAGCAGAGCCTCTGGTGGAGGACGCAGCACAAGCCGCTCATCCAGCACCAGCATCGACTCCAATCTCAGCAGCAAGTCCAACACGCTCCATGGCCCCAAAAGCCGCAGCCAAGTCCCCAAACCCAGCGCTGGTGGCACCCCCCTTCCTGGCTCTGGATCCAACCAGACAGACCGGGAGAAGGGGGTGTCCTCTGAAGCCAGTCCCACAGCCCCGGGAGCCAGGCAACCAGGGGGAAAGTACCCAGACGTCTCCTCCCCTACCATGCGCAGACTGTTCGGAGGCAAGCAGGGCAAGCAGCATGCCCCAGTCACCACCGCAGAAAACATGAACAACTCCACTGGCCAGCAGGGCAGCGCTCTGGACTCCCCCTCAGCCAGTAGCGGGGGCAGTAGCCCTCTGTATGGGGGTGGAGGTCGTCTGGGTGTGGAGGcacactccctctcccccctggCCTCCAGTCCCAGTTCGGCCCTGTCCACCCCCTCCCACAGCCTGGCCTGGAACAGCACCCTGAGCAGCCTTGCCACCAGCAGCGAGTCCATCGACCTGTCTCTGGGCAGCGGAGGCCACGGACACCACGGCCCTGGTCACGACACACTGCCAGCCTGCGTCAGGAACAACGGCATCAAAACTGGCTTCTCAGACAGGTACGGCCACCTGCCCCAGCTACGTAGTCATGACGACCACCGGGATTGGCTGCGTTCCCACTCTGCAGGAGGTCTTCAGGAGTCTGCCGCCAGCTCACCCTTCTACCCCACCTCCAGCCTCACCTCGCCCTCCGGAGCCCGCTTCAACTTCTCCCAGCTTGCAGGCAGCCCTACCACGGCGGCACAGATCAACCTGGCAAACCTCCGCAGCGTCCTGGCCAATCAGGATGGTTCGTATGACCCATACAGTGACCCCCGTCTGAGGAACTCGTCCATGTCTCTAGAGGAGAAGAGTCGCACCATGACCAGCTCTGGGTCCTTCAGAGAAGGCCTGGAGGAGGTCCAcgcctcctctgtgtctctggtgTCCAGCACTTCGTCTGTCTACTCCACGCCTGAGGAGAAAGCTCAGTCAGAGATTCGTAAGCTGCGGAGAGAATTGGACGCCTCCCAAGAGAAGGTGTCTGCTCTGACCACTCAAATGAGTGCTAATGCTCACCTGGTAGCAGCATTTGAGCAGAGCTTGGGGAACATGACCATCCGACTCCAGGGACTTACCACCACGGCTGAGCAGAAGgaCTCTGAGCTAAACGAGCTGAGGAAGACCATAGAACACCTGAAGAAGCAGAATACCGCAGTCCAGGCAGCCATCAACGGTGACATCAATCTCCCAGAGACCTCCTGCCATTCCATAGCTTCAGCCAATGAGAGCTCCCAGTCTCACCTGGACCTGCGTATCCACAGACAGCACTCATCTGACAGTGTGTCCAGCATCACAAGCGCCACCAGCCACTCCAGTGTGGGCAGCAACCAGGAGCTGGACTCcaagaacaagaagaagaagaactggGTTTATGAGCTGCGGAGCTCCTTCAAGCAGGCATTTGGGAAGAAGAAGTCGCCCAAGTCTGCGTCCTCCCACTCAGACATTGAGGAGATGACCGACTGTTCTCTGCCCTCCTCCCCCAAGCTAACAGCATATAACTGCTCCACCATCTCTACACCCATGCTCCAGAACTCCCACTCCAACTCTTTGATCTCAGAGTACACAGACAGCGAGGCGGAGAAGGTGATGGGGCTCCGCAGTGAGCTCCGAGACAAGGAGATGAAGCTGACTGACATACGCCTGGAGGCCCTCAGCTCCGCCCACCAGCTGGACCAGCTCAGGGAGTCCATGAACCGCATGCAGGGCGAGATAGAGAGGCTGAAGACTGAGAATGACTGTCTGAAGATGGAGAGTCAGGACAGCTGCAGCAGAGCAGCCTCACAGGCCTCAGTGGCCTCACCCTCAGCGGGCCAGTCACAGCACGGCCTCGCCCTAACAGAGTCCACCAGCCTCGACATGCTGTTGGAGGACAACGGGGACGGTAGCTCACGGAAAGAAGGACAACACGTCAAGGTGGTCGTAACTCTGGATGAGGACACCAAGTGGAAAGAGGACCGTAGACCTCGTCATTTCCTGATTGGTTGCATTGGTGTCAGTGGGAAAACTAAGTGGGATGTGCTTGATGGGGTGGTCAGACGTCTCTTCAAGGAGTACATCATCCATGTGGACCCAGTCAGCCAGCTGGGTCTAAACTCAGACTGTGTCCTGGGCTATAGCATCGGGGACATCCATCGCACCAGTGGGGCTGACACCCCTGAACTCCTGCCCTGTGGATACCTTGTTGGAGATAGTGacaccatctctgtctccctcaaaGgtgtgtgtgagcaCAGCCAGGACAGCCTGGTATTCGAGACACTGATTCCCAAGCCCCTGCTGCAGCGCTACTTGTCCCAGCTGCATGACCACGGCAGGATCATCCTGTCTGGCCCCAGCGGCACTGGAAAGAGCTTCCTGGCCAGCCGGTTGGCCGAACACATGGTgctgagggagaggagtgaggtcACCGATGGGACCATTGCCACGTTCAACGTAGACCACAAGTCAAGCAAGGAGCTGTGTCAGTACCTGTCTAACCTGGCTGACAAGTGTAATAGTATGAGTCATGGGGTGAACATGCCCCTTGTGGTCATACTGGACAACCTGCACCGCAGCAGCTCCCTGGGAGAGGTCTTCAATGGCCTGCTCAGCTGCAAGCACCACCgctgTCCTTATATCATTGGAACAATGAATCAGGCTACATCGACCACTCCCAACCTCCAGCTTCATCATAACTTCAAGTGGGTGCTGTGTGCCAACCATACTGAGCCAGTGAAGGGCTTCCTGGGTCGGTTCCTGAGGAGGAGGctgatggagacagagatcagcaGCCGACAGCGCAATGCTGAGCTGGTGAGGATCATTGAGTGGATCCCTACTGTCTGGCATCACCTCAACCGGTTCCTGGAGTCCCACAGCTCCTCGGACGTCACCATCGGGCCCCGCCTCTTCCTGTCCTGCCCCATGGATGTGGAGGGATCCAGAGTGTGGTTCACAGATCTGTGGAACTATTCCATCATTCCCTACATGCTGGAGGCTGTCCGAGAGGGGCTGCAGCTGTATGGGAGGAGAGCTCCATGGGAGGATCCAGCACAGTGGGTGGTGGAGAGCTATCCCTGGGCAGCCAGCCCCCTGCAGCACGAATGGACCCAGCTGCTGAAGCTCCGGCCAGTGGACGTGGGATTCGATGGATACTCCATCTCCAAAGACGGCTGTCCCAGCAAGCAGGTTCCCCAGGGAGACACTAACGGAGACCCCCTGATGAACATGCTGATGAAGCTAAAGGAAGCGGCCCACTGCTCTGCCAGCACTCAGAGCTACGACAGCGACTCCAACAGCAACCAGGATCACCATGACAACACCGTGCTGGACTTATCACTGGAGTGCACACTATGAGTCTCACTGGGTCAGATAATACTCACTGTGGCTGGGACACATCCTAACTTGAGATACCTTTGTGTTAGTCATCCATTGACATCAATGGGAGACTGATATGAGGTTATGTATTTGAAGATGTATTTAAAGTTAGAATTTGGACTTCTGTAATTTCAGATCTTTAGGCAGACATATTACATAATAGTTGGAACTCACTActttccaaaaagggttcttcaaagggtcctcctatggggacagccgaagaacccttttaggttctagatagcataaccttttattctaagagtgtagaccttacagggcTATTAAATTCCCGTCCTGAAGGGATGAAATACTTCTGTtttttcatcctctccttctaatTCAGATCTGGAAACCACTTGAATACAATTAACTACCAGATagaaacaaaaaaaactgaaatgtttCTCCCTTCCAGGACTGGAATTTAATAGCCTTGGGCCATACTGGGTGCTGGTAACCCAAGATAAAAATCCCAGTCAAAGTTCAATAACCTGAATAATTTCAACTCAGTACTCTACTATTTTCAGTGTTTATTAGGAGTATGTTTACAATCACAGGCAAAGACAGTCAACCATATAAATAAATGACAAATCTTATGAGACGTCAAACCTGTTGCCTTGACTGTGACCTAACCTAGGCTATAGCTCATGAGATGTCAAACCGGTTGCCTTGACTGTGACCTAACCTAGGCTATAGCTCATGAGATGTCAAACCGGTTGCCTTGACTGTGACCTAACCTAGGCTATAGCTCATGAGATGTCAAACCGGTTGCCTTGACTGTGACCTAACCTAGGCTATAGTTTATCAGATGTCAAACCGGTTGCCTTGACTGTGACCTAACCTAGGCTATAGCTTATGTGGTCCAAACTGAGTAGCAATAACTGGATATACATTCACTCAGCTGCATAGagctttttttaatttattttttatttcacctttatttaaccaagtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacacatacaacaacgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226161 lncRNA upstream 9144 88363392 ~ 88389493 (+) True mpped2
TU226193 lncRNA upstream 52222 88346077 ~ 88346415 (+) True G199808
TU226185 lncRNA upstream 74718 88323695 ~ 88323919 (+) True G199800
TU226184 lncRNA upstream 75055 88323293 ~ 88323582 (+) True G199799
TU226176 lncRNA upstream 84691 88313487 ~ 88313946 (+) True G199791
TU226533 lncRNA downstream 18596 88585661 ~ 88585904 (+) True G200117
TU226562 lncRNA downstream 39565 88606630 ~ 88607045 (+) True G200146
TU226579 lncRNA downstream 63419 88630484 ~ 88632486 (+) True G200162
TU226636 lncRNA downstream 162307 88729372 ~ 88729663 (+) True G200218
TU226637 lncRNA downstream 163161 88730226 ~ 88730445 (+) True G200219
XM_021575859.2 mRNA upstream 9142 88363311 ~ 88389495 (+) False mpped2
XM_036958475.1 mRNA upstream 9142 88363709 ~ 88389495 (+) False mpped2
XM_021575793.2 mRNA upstream 327742 88053909 ~ 88070895 (+) False LOC110498955
XM_021576018.2 mRNA downstream 56304 88623369 ~ 88630357 (+) True LOC110499106
XM_021576031.2 mRNA downstream 94848 88661913 ~ 88667515 (+) True LOC110499113
XM_036958483.1 mRNA downstream 124362 88691427 ~ 88726701 (+) True LOC110499119
XM_021576065.2 mRNA downstream 171830 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA downstream 178177 88745242 ~ 88750469 (+) True bmt2
TU225538 other upstream 530670 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 861709 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 901902 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1248147 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1359401 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 852704 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1880053 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2149877 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2669960 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2799272 91366337 ~ 91539373 (+) True mgat4c

Expression Profile