RNA id: XM_021576075.2


Basic Information

Item Value
RNA id XM_021576075.2
length 4108
RNA type mRNA
GC content 0.43
exon number 5
gene id bmt2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88738895 ~ 88750469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGTTTCATTTCTGCAAATCTGAGATAGGTTTTTCCCCCATGTGGTCATGGGATTTCTTCCTTATCAGCGTGTTTACTCACGAAACACACATTCTGCTGTGCGTCTGGGAAGACCTGTTGCAGGAAATTTGTGAAGATCTAGACCTAGGAACAGAAGTGAAGACCGCTATTGAAAATCCAGTTTTCAGATATGCCAGACATATAATGAGTAACTGTTTTGAAAATGTTGAAGCAATGTTGCGTCAGCGGTGTTAGCCTGTGGTGTTTTCATCTGAAGGGCTGAACGATTGTGATTCCTCTTGAATGCATGGCCACACTTTATAATGGGGGATTTTGAGAAAATCTGGCGAGAGCACTGTGAAGATGAACAGACTCTGAGTGAATACGCCCTGGCCATGAGGAACCTGGCTGACAACCACTGGGCCAAGACCTGCGAGGGAGAGGGACGCATCGAGTGGTGTCGCAGTGTTTGCCAGGAGTATTTTCAGGATGGTGGGATGAAAAGAATGTTGGAGAAGGATGAGAAGAGTGCCAGGCTTGCCATGGCCATGTCGGCCACAGCTCTGAGTGACCAGCCCTATAGCTCCTCTATCCCCAGGTCCATCCTCCAGCTTGGTAAAATGCGGCTGCTGGACGTTGGCAGCTGTTTTAACCCCTTCCTGAAGTTTGACGAGTTCCTCACAGTCGGTATTGACATAGTGCCTGCGGTCGAGAGTGTATACAAGTGTGACTTCCTCAACCTCCAGCTCCAGCAGCCTCTGCAACTGGCTGGCGACACAGTGGAAGCCTTCCTGAGACAGCTGCGTAGCCCCATTGACTCCCTGCCCGCCCAGCTCTTCCACGTAGTGGTcttctccctgctcctctcctacTTCCCCTCGCCTTACCAGCGCTGGATCTGCTGCAAGAAGGCCCACGAGCTACTGGAACTGCACGGCCTGCTGCTCATCATCACCCCAGACTCCTCCCACCAGAACCGCCACACCCTCATGATGCGCAGCTGGCGCGTGGCGGTGGAGTCGCTTGGCTTCAGGCGCTGCAAGTACATCAAGTTCTCCCACATGCACCTCATCGCCTTCCGCAAGGTGTCCCTGGCCACCACCAGCGACCTGGTCAGCCGTAACTACCCCGAGATGCTCTACATTCCTCAGGACTTCCAATCCCCTGAGGAGGAGGACTACACCGACGTGCCAGTTCAGGTGCGCTCCGACTTCGAGGACGACCAGCTGGCGTGGGGCTTCATGGAGCTGCCCGACACGCCATATGACTCGGATAGCGGAGAGAGCCAGAGCAGCTCTGTGCCCTTCCTACACGAGCTGGAGGACCCCATTCTACTGCAGAGCTGAGCTAGACCAGCTAAAACCCTACTAGCTACTCTCTTCTCTTTTACCAGTTCCAATTCGATCCCTACCACTCCTCTTGGCCATAACCCTTCAATGTTTGCAGATCTGTAATGTGGAAGCAATATGGGTGACGCTTTAACGCCACACTACTTATACCTATCCAGAGCCTTCAGACATGCAACATCGAGTGGTTAGGCCCAAGGGGGAGGGATACAGTCTGTCTGTACACAACTGCTGCGCTACCAAATGAACCTGCTGCATTCTTCTCACACTCCTACTCTTCCTTAACAATGCAGTTTgcacagagtgaaagaaaaagacGTTTACAGAAGTCAGTTTATTTTTTTCAATATCTTCGATGGTTAGTCACTCAACACAATACACACGTCAGTAAATAAGGtagttttttaaaataaaaacttgGTCGTTGAATACCCTCAGGATAGACTGAGAGTAAGTCTgccccttgttttttttttatccatcttTGATCTCACTCTACTAACAGAAGAAAAGCAATCTTTACTCCTTCAAAGGCTTTTTCTTAGTAGTTAAACAGTGAATGTGCTTCAGTGCCAGCAAGCCGCTGACTTTAAATCCCTCTTAAATGGATTGATACCACAGAGGTTTGTCAAGTTTGGTTGGAGTGGAGCGATTGAGATGTTAGTCAGGTGAGGCTAGACTTTCTCTAATTCTTGGTATGCATTTACATTTTCtaaaaaaaataagaagaaaaatacattgtACTCTCAGccaaaatgttttgatttgttccCATTTGAACACTGGTCTTGTCCAACACGATGTGTGAAAATGGCGTTTTAATTCAGCATTTTGTTTGGCTGATTTCATGGCTCTTTTTACAATAGATTTGTAGCATTTTCAGAACTTTAAGATAGGTGTACGTAATTACTTTTACTAATGTGAAACTGTTAACTGTGTTTTTCTCATTGTGTAACATGGTACGAGTTGTGAACTAGTCATTGCTCTCTTTTCTGTGCTGGTGTGAAGAAACTGGTTTTAATCAATGTTAATTTACCTTCAATGTTGTAACCCAGAACATTTAGCATTTTGTCATTACATCCTTGTTTGTAATCACTTTATTTTCTGTAACAATACTTAGGCTACATTATCAGATCAATAATATGTCTGGATTTATGTATTTGCTTCTTTATAGGTAGCTGGTAGCTTCTCTATGGGTACTGGTAACATATTCCAAAAAAGAAGACTGCCTATACTCTGTCgacgtgtccttgagcaaggcacttaaccctaatttactCCAGGGGCACCGTACTATTATGGCTGACCCttttaaaacaacacatttcactgcacctatccggtgtatgtaGCGATAAAACCTCTTATGTTCACTGATGTGAAACAGGTCAACCAAGAGACTAAAGCTCTAGCTGTCAGTTGCTGTTCATCTCTCTTCCTTTACTCTACATCGTATCTGAGGACAGCAACATTTGCCTTAagcatttttacatttttgtcatttagcagacgctcttttccagagcgacttacagtagtagTAAGTTCATACATTTTAATActttttttcatactggtcccccatgggaatcaaacccataaCCCTGGCGCTACAAGTGCCACTCTCTACCAACAGCTACATGGGACTAGCATTCGTCATTTCCGAATTAAAAATATTAATTGTTTTTTTCATGGGTTGCTAGTATAGGTGTATCAACAAATAACGAGTCATTCATTGCATCAGGAAGTACATTTTGACTATCACTTTACACATGAAAGTACTAAATGTGTACTCTGCTTAAGTTTTAACTCCAAACAATTTAAAATGATCTTGTTATGAGCGCTCAAACAATTCCAAATGATTCACCTCAATGAGGTTTTGCACTAATACCCTGCTGTCTCATCATTAGTCATGCAACTTCTGATCCCATCAAAGTGCATTTTAGCAATAGCCAGGTGTTTCCTGAAAGTACTGTATCTTATGGGGAATGGTATTTATGTTCCCCTttttagtgtggatgtgtgtttgttgTAATGTACTTGTCTGTGGCACTTTACGTCATAAATAGTAGATGAATCTCTCAGCTGCCATGAGTCATGTGATTCCTGTCATGGGGGATTTAGGATTAGgtctcccaaatggcatcctattctttatggggaatagggtgccatttgggatgctacaCAAACAACCATAGTCTTATTAGTATAAACTGTATGATGTACATCAGGATACCTGTAATCCTAAAGGTGCCTTCTTTCTTATCCCCAGTAATGTTTTTGCAATCCTGATTCTCATGCCATACTGTGTTGGAAAACTCACACTTCACTTGTCAGCATACAACGGGCTTCTTTTGCCAAATGTTTGTCATGTGCAACTGCCCAAATGAGCTACCTACTACCATCTACCACTGCAAAGTATCATTGGCTCAATGTTTTACCCTAAGaacaatatattttgtttaaattTGTCATCTTTCATTAATTACTTGCTCTAAATCTGTTAACTTTCTGGTCAGTTCATGTTTGGTGTATTTTCAACTATTTCTCTTTAacagaaaatacaaaatacatttctcaTTATAGTTCATTTTCTTGAGCGTTGTCAATTGTACCAGTTAGCATTTAGGGATACATCTCATCTGTCTTCCAAGAGTTTAAGTCCATTACTTGCATGAATAGCTTCATTTTCAGTATTAAGGAATTCGACAGTgtgcatttttttttcttctctcttttaTAAATGAATGGAAATGCA

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0016433 rRNA (adenine) methyltransferase activity molecular_function

KEGG:

id description
K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226637 lncRNA upstream 14797 88730226 ~ 88730445 (+) True G200219
TU226636 lncRNA upstream 15579 88729372 ~ 88729663 (+) True G200218
TU226579 lncRNA upstream 112756 88630484 ~ 88632486 (+) True G200162
TU226562 lncRNA upstream 138197 88606630 ~ 88607045 (+) True G200146
TU226533 lncRNA upstream 159338 88585661 ~ 88585904 (+) True G200117
TU226768 lncRNA downstream 28495 88778964 ~ 88781586 (+) True G200331
TU226773 lncRNA downstream 33793 88784262 ~ 88784585 (+) True G200335
TU226789 lncRNA downstream 57376 88807845 ~ 88808071 (+) True G200351
TU226814 lncRNA downstream 92915 88843384 ~ 88843605 (+) True G200372
TU226903 lncRNA downstream 238467 88988936 ~ 89041767 (+) True G200457
XM_036958483.1 mRNA upstream 18541 88691427 ~ 88726701 (+) True LOC110499119
XM_021576031.2 mRNA upstream 77727 88661913 ~ 88667515 (+) True LOC110499113
XM_021576018.2 mRNA upstream 114885 88623369 ~ 88630357 (+) True LOC110499106
XM_036958481.1 mRNA upstream 178177 88398637 ~ 88567065 (+) False LOC110499041
XM_021576056.2 mRNA downstream 299 88750768 ~ 88758734 (+) True tmem168b
XM_036934382.1 mRNA downstream 65334 88815803 ~ 88980439 (+) True LOC110502274
XM_036958486.1 mRNA downstream 382464 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 417845 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 417845 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 877275 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1208314 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1248507 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1594752 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1706006 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 669300 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1696649 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1966473 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2486556 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2615868 91366337 ~ 91539373 (+) True mgat4c

Expression Profile