RNA id: XM_021576056.2


Basic Information

Item Value
RNA id XM_021576056.2
length 4878
RNA type mRNA
GC content 0.46
exon number 5
gene id tmem168b
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88750768 ~ 88758734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTCATGAAGTAATCCAATGATGGGTACGCTACGATTTGTTTCTAATTCAAATCTTCTCTCATTGATCGAGACCAGTGAGTGTCATGAGCGGCAGTTTCGGGTGGACTCAACTGTCTCAATCAATGAGAGAAGATATGAAGTAGACAAGATAGTGGCATATGCATTGTTGGATTACAacatttattatattatattttaatAATGGTACATTTTCTAAATTCAAGGGAACCACCTGCAACTGGACACCAACATTCTAGAAGATACATGTTTGGGTGACTAAAGAAGATGGTTGGTCTAAAATTCTCTGCTACGCCAAACTACCTGTCTTGTAACGGCTAATTGAGCATCACATTAGCCCGTTACAATCTGCCTACTAGGTGTTGATCATGTTAGTTAGGGCATAAGTATATCAATGTGTAGTATGTTTTGACCTATATTGATAAAGTATTTGTAATATTTAGTGGAAGAGCCTCATTTACAGTACGTCTAGATTGATTGATTAGTCATCACACTTTATGAATTTCCATACTTCGACTTTCCGCCACTTTGTTGGTACTACTGACTTGCCGTAGTGACGTAGAGTCGCCGTTCTAGTTTGATGGCGGCAGTCATTTGACCGAAAAGTTTTCaaagtggaaaataagtattttgtctaCTGCTTCTTCAagtgaaataaattaatttgggCTAGCTAGGTTTGTATGAGACTTATCTATTTACATACGAAAGAAGAGAAACAGCAAACGGACCATGTAATCAAGCGTACCATCTGCCAGTCGtacaactgcaagctagctaccGGCAAATCATGTAGCTAGCAAAaaccatgtagctagctaactagctagtaacTTCTAGCTCACGTTAGCTAGCTTAGACTACCTATCACTAGCTCAAAGTTTGCTGCTCTGTTAGTTCAAGGTGGCTAGCTAGTGAGTTACTTTTTTTTCGCCATGGTCTTgcaatctagctagctaagtttgCTTCATGGAAAGGTTTTAATTGCCTCTGAACTCTTAACTAATAACGTTACCAGCTGTAACAAACTGTTAGCTACTCTTACATATCAAAATGTTTCGCTTACGGTACTGTGTCAGTCACTGTCTGCATGCAGCGATGACCAGACTGGAGGAGGTCAACGGAGAGGTCAACATGTGGTCCTCTGTCAGATGTCTGGGCTACCTGTCTGGTCTGAACCTGCTGGTGGCTCTCTGCCTGGGGCTCTATGTGCGATGGGAAAAGACTGAGGAACCCATGATCCTCATCATATTTGTTCTGGCCCTGTTTGTCCTCGGTATAGCAAGCATACTGTACTATTACTTCAGCATGGAAAAAGTCAGCCTGAGCCTCCTCCACCTGTGGTTTGGCTTCCTGCTTGGCCTCCTGTGTTTCCTCAACAACCCCACTCTGGAGAGCAACATCAAAGAGCAAGCCACCAACTACCTCCTGCTGGCCAGTGTTGTCTTGAGGACGCTGTGGGCTCTGCTGGAGAGGATGTGTGGCTGCACCAGGTACCGCCCTGCCTTCCTTACCTCAGCAGAGGCCCTGGAGCTGGCAGGCTTTGCCATCGCCAGTACTGTCTTATTCATCCAGAAGTCCATGAGTGTAGTGGTGCTGGTGGTGGCCCTGGCTACTCTGATGGTGGCCCTGCGCATGAAGGCTCTCCTGGCCCTGCCCAACCTGGTCTGCTTCTCCATCATCACTGCGGTGCTGTTCTTCAAGGCTCTGGGCATCACCACCAACCCCTTCGCCCTGGCATGTTTCTTCAGCCAGCTGATCTGCGACCCCTTGCTGGACGTGTACTTCAGTGGGCTGTCGGTGACCGAGCGCTGGCTGCCCTACCTTGCCTGGAGGGGGCTGTGGCGCAGGCTGTCCCTCCTGCCTTTGCTGCTGGCGGAGGTGGGCTTCTGGATCCTGGCAGCCCTGAAGCTGGTGGACCTGGACCGGTGGTACCTGATGATCCCGGGCTTCATGCTGAGTGGGGTGTTCTGGGCCATCTGTCACGTGGTGTTCATCATCACTCTGTGGGGCTTCCACACCAAGCTTAGTGACTGCCAGAGGGTGTGTCTGGCCCAGGGAGCCGGGAGCAGCTGCCTAGACAAGGTTATGGCCTCTAAAGGAGTCAGACACTTCTGTCTCATCTCTGAACGCCTGGTGCTCTTCAGTCTGGTGTCCACTGTCATCTTGGCTGCTTTATCATGGCAGtcCTCCAGCAGTATCTTTATGAGTATGCTCCTGCTGGTCCTGGCTCTGGAGTCTCTGTTCCACGGCCTCTTCTATGAGCTGGGAAACTGCCTAGGCGGCACATGTGTGGGGTATGCAGTGGTCATCCCCACCAACTATTGCAGTCCTGATGGGCAGCCCACTCTGTTACCTCCGGACCAGGTACATATGTTGAACATGCATTCCACGGGCATGTTGAACAGTATACAGAATTTCTTCTCCTACCACATGATCGAGACGTTCGGCTGCGACTACTCCACCAGCGGGGTGACTCTGGAAGCCCTACAGGTGAAGCTCAAAGCCTTCATGGAGCTCTGCACAGCCGATGGGCCTCGCCACGACACCTATGTGGTGTTCTACAGTGGGCATACCCACCGCAGCGGGGAGTGGGCACTAGCAGGAGGGGGCACCCTTCAACTGGACAAGATCCTGGAATGGTGGAGGGAGAAGAACAATGACTCCTGCTCCCGCCTCATCCTGGTCCTGGACAGTGAGAACTCCCTACCCTGGGTTAAGGAGGTAAGGAAGGTGGGGGGGCTTTATGTGGCGGTGCAGGGGGCCCAGCTAGCCCGAGCCACGGATATTGAGCTCCAGGACACCCCCCAGCTTGGGGACTTCACCTCTCAGTGGGTGGAGTACAACTGCAATGCAGACAGCACTGTCCAGTGGTCAGAGAGGGGAAGGACTGTCACCGCTGCCTACGGCATCTCTAAGCACTGGAGTGATTACACACTGCACCTGCCCACAGAAAGTGATGTCACTCAACACTGGAGGATGTACTTCCCCAGGATGACCTACCCCGTGGTCCAGTTAGCGCTCTGGTGTGGGGGGCTGAACCTGCTTTGGCTATGCAGTGTCTGCCTACGGTGCCTCAAAAGGGTCAAACTCAACTGGTTTCCCCCAGCCATACTAGACACTGGCCAAGGATTCAAGTTGGTCAAATCTTAGAAATTCACCTCTGTAAGAATCATACTGTCTAAGGCTTCTTCACTTTGTATTTTCATGTTTTTCACCGTACAGAAATGTTTTCTAAATCAGTTTTTgtaattgattgattggttgcgTGATATTGATCGCTGAGTTTTTAGGACCCTCAGTGAAGGCAGCTGTTGATTGTGAAATCTTAAAAGGATACTTCGGGAgtttggcaatgaggctctttatctacttccccagagtcagatgaactagtAGATATCATGTCTCTGTGTcaagtatgaaggaagttagaggtcactagcattagcacaatgagtggatgtctatgggtatctgctagcatgctgaAATCCCAAGGTTTCCCTTTAATGACTAACTAGACAGttacagattgtgtgtgtgtgtgtgtgtgagctataTGTTTTGCTTATGTGTGCTAAAGTACTAAGTTACTGATATGAGGTTCCTGATTTTGATGTACTATGGTATTTTGATGTAGTACTACATATTTCTTTCCCAAATTATTGTTTGGCTATTCCTTAAGTCATTCTATAGATTCATTAGTGGTggttatttgatttgattagagttTTGTTTTACATAATTTCATTTCTAGTCTTTTGGTGGGTTTATTGGGGTAGTTGTACCGTTCTCTGAACTCCAGTTGTACTGGCTTATTCCCACCTTTTTTAAACTTTTCTCTTAATTCAATCGCTCTAAAAATTCAAATTGAAATGTATACACCTTTTTCCCAATTTATCACAATTTCAGGCTGAGAAGCCCTGCTGCTGTAGAAGTGGTATCATATTGTCACTCTCCCAGATTGGATTTTCAAACAACAAAAAGTTGCAGTGGTTACACTGATTGCACCATTCATCTATTATGACCAATGCATGCCCCCATCCAGCTTTGTAAATCTGATATTTTTCACAAATGGCCTTTTGTCCCTGTTTAAAAAAGGATATCAGGTTACTAGGATATTGTATTACGATAAtagttatttcatttattttcaaGAGTCGAATGTGGATTTCTAATTCGATACTTTCATATTTGATTGCTATCCATGCGTTTCCATACATCTAGGCCTATTTGTATATTCAGCTTTTAATTAACTACTTTATGTCAAAGCTTTGAAGAGtattgaaaggttgctggatcgaatcccagagctgacaaggtaaaaatctgtcgttctgccactgagcaaggcagttaacccactgttacccgggcgccgaagacgtggatgtcgattaaggcagcactCCACACCTCTcggattcagaggggttgggttaaatgcggaagacacatttcagttgaatgcattcagttgtacaactgactaggtatccccctttccctatcaCTGCTGTTTCACATCTGCTATTCATTTATTTTGTATGAATAACTTTGTACTGCTTTTGGGACGTCTGGTATCTACCACAATTACCTCAGGGAGTCTGAGGGTTGTTACTGTACCTATACTGATTGCACTACCTGGAGGAATATGGACCCAATGTAGGATGTGATCTTGCATTTATGCGTGATTGTACTCTGGGGTTTATCATAAACAGTGATTTAGACATGCAAGCTTAGCCTAATCAACTgtgtgtatggaaatgttttaatCTTAAGCATTGACAGAATTCTCAACTATGCAATAAAAATTGAGATTTCAGTGTTTTTAATTGATATATGGACAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226637 lncRNA upstream 20323 88730226 ~ 88730445 (+) True G200219
TU226636 lncRNA upstream 21105 88729372 ~ 88729663 (+) True G200218
TU226579 lncRNA upstream 118282 88630484 ~ 88632486 (+) True G200162
TU226562 lncRNA upstream 143723 88606630 ~ 88607045 (+) True G200146
TU226533 lncRNA upstream 164864 88585661 ~ 88585904 (+) True G200117
TU226768 lncRNA downstream 20230 88778964 ~ 88781586 (+) True G200331
TU226773 lncRNA downstream 25528 88784262 ~ 88784585 (+) True G200335
TU226789 lncRNA downstream 49111 88807845 ~ 88808071 (+) True G200351
TU226814 lncRNA downstream 84650 88843384 ~ 88843605 (+) True G200372
TU226903 lncRNA downstream 230202 88988936 ~ 89041767 (+) True G200457
XM_021576065.2 mRNA upstream 299 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA upstream 299 88745242 ~ 88750469 (+) True bmt2
XM_036958483.1 mRNA upstream 24067 88691427 ~ 88726701 (+) True LOC110499119
XM_021576031.2 mRNA upstream 83253 88661913 ~ 88667515 (+) True LOC110499113
XM_021576018.2 mRNA upstream 120411 88623369 ~ 88630357 (+) True LOC110499106
XM_036934382.1 mRNA downstream 57069 88815803 ~ 88980439 (+) True LOC110502274
XM_036958486.1 mRNA downstream 374199 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 409580 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 409580 89168314 ~ 89202963 (+) False ankrd27
XM_036958489.1 mRNA downstream 409580 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 882801 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1213840 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1254033 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1600278 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1711532 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 661035 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1688384 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1958208 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2478291 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2607603 91366337 ~ 91539373 (+) True mgat4c

Expression Profile