RNA id: XM_021576089.2


Basic Information

Item Value
RNA id XM_021576089.2
length 2632
RNA type mRNA
GC content 0.46
exon number 11
gene id znf277
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88763558 ~ 88770972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCGGGGGCTAAGGAAATGATATGGGCACTGGTGGTGCAGAACTGGCAGGAGCAGTGGAACAGCAACACTAAGGACAGGCATCTATATTCCCTGTTCAGAGTAAAGTCGGGGAGGATGGTATgaagggacagaagagaggaggccatTTTTACAAGGCTACGGGTGGGACACAGCCGGTTTAATAAGTAATTAATTATATGTGATAGGAAAGCGTCCAACAGGAAGGTGTGATTACCGCAAGACATTGGAgaggtgggtataatttgtggaacgttccaacaggaatccgTTCCAAAAACGTCTTAAagtacaaggttgccaacaaacgCATACAATGTAACATGATCAATTCACCTAACTTTTGCTAAATAACTATCGAGGCATCAACTCACCACGTAGCTTATTCTTAATGTTTGTCAATAGGTTACCAGagtgaggacagacatttttCGGAATAAACATGGTGAGTGAAAAACGTTATTAATTAGCCCACTCCCAACCCGGTTTCGTATTATGCCACTATACGACTTTGTATGCGTTATTTGTGGGCAACCTTGTTATTTACGAAGTTTTTGGATCAGATTCATGTTGGAACGTTGCAAAAATTATACCTACCAACATTGGAACATGTGCTGATACTGTGTGGGCAGTAtgatagggagagagactgagaatggGATCCAGTAATTGAGTTTAAGTAGCATACTGAGTTGAACATAGTTAGATACAATCACAAATATGTTGTTATATTTTTTTAAGAGAAACTTAGCTGGCAGATAGGATTCAGTTCCTCCCAGTACAGTGGGTGGCGCTAATGCACCATAACGTTGGATACCAACTGCCGATAAACGCCAAAGAAGAAGAACAGCCGTACGGCCGATAAACCGAACAGAAGAACGTCAGCTGTATTGACCACGTGACATTTGAAAATGGCTGCCTGCGTGGAGAAAAAAATAAATTCAGATGAACAGGAGTGGATACTGGAGCCTCTGTGTTTCCCTGAGCAGCCTGCTACAGACATCGGCACCAACTCATCCTCTCATCATGACATGGAGGTGGTGACCTGTGTGCTCTGCTCTCACTCCGCCCCTTTGTCAGAGAAGGACCGCCTCCTAAAGCACCTAGTACTGGTGCACAAGCTGGTCATCGCTGATGTCAAACTCATCGCTGACTTTCCTAAATACATGGAATACTGGAAGAACAGAATCTCTGAGCAACCCATCACAGATTTCTGCAGTGTGATCAAGACTAACTCGCAGGGCCCTGTTGAAAAACAGGAGCACTACTTCCTTCTGTGTGATGTCCTGCCAGAGGACAGGGTCCTCAGAGAACATCTCCAACAGAAACGACTGGAGGAGATCCTGGAGCagcagcagagggagagggatgacGACAGCTTCCAGCGCATCTGCATGTTCTGCAATGACGAGTTCAATGGGAACAGATCGTCACTGCTCAACCACATGGCCAGGGAGCACTCGTTCAGCGTGGGACTGCCTGACAACATAGTGTACTGCGTAGAGTTCCTTGACCACCTGCAGAGCAAACTGGATAAtcTGCAGTGCCTGTATTGTGAGAAAACATTCAGAGACAAGACGACACTGAAGGATCACATGAGAAAGAAACAGCACCGCAGAATCAATGGCAACAACAGCGAGTATGACTGCTTCTACATTATCAACTACCTGGAGCTGGGGAAAACATGGGAAGAGGTCCAATCTGAGGATGATCGGGAgatggaggatgaagatgaTGATTGGTCAGACTGGCAGGCTCACCCAGTGTGTGCTGTGTGCCTGTTCTGTGAGCAGCAGTCAGAGAGCATGGAGAAGATCTACACACACATGGAGGAAACCCACGGATTTGATCTGCACAAGTTGAAGACCGAACTCAATCTGCGGTTCTACCAGCAGGTCAAACTGGTAAACTACATCAGACGAGAGATCCACCAGTGCCGTTGCTACGGTTGCCAGGAAAAGTTTGGGTCCAAACCTGAGGTTATACGTCATGTAATGGAGGCAGGTCACGTGATGCAGCTACCAGAGACGTCAACCTGGGACCAACCACAGTATTACTTCCCCACCTATGAGAACGACGCCCTCCTCTGTGCCTTGTCGGACAGTGACAGTGAATCAGAACACACAGGCCCTTGGAGAGACGTCCCTGTCATAGCTGAGGACATCTCTAACCTGAAAGTCCTGAAGCAGACCAGCGTCCTCAGCCACCTTCTGAAGAACACAGACAGCTCTAGTTAAAAAGCTGGATGGATGGACCAATGATGTTATAAACTCAGTGGAGGATGCtcaggggagaacggctcatagaGGGACACAGTGCAACAACTTCTCGCTTCGCTGTATCTCCAACAAGACGGTGATGCTCATCAGACACTGTGCACTTAGCAGACCAGCACACATGTGCAGAAATGAACATGGCCTGTTTCATAAGAATTTCCTGAGCCTGGACTACATTTATGTATGATTTAATGTCATACTTGGTACAAATCACCATGTACAACATACCTGCAGGTGGATTTGTTTCATATAGTATGATTGCTGACAAAACGTGACCTCACTGCAGAGATGTGACAATTGCTAAATGTAAATAAACATTATGAATATACTATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226678 lncRNA downstream 52070 88655772 ~ 88711488 (-) True G200253
TU226713 lncRNA downstream 55099 88706620 ~ 88708459 (-) True G200285
TU226659 lncRNA downstream 137316 88623394 ~ 88626242 (-) True G200240
TU226522 lncRNA downstream 194843 88565870 ~ 88568715 (-) False G200109
TU226523 lncRNA downstream 194843 88565870 ~ 88568715 (-) True G200109
TU226939 lncRNA upstream 8010 88778982 ~ 88781586 (-) True G200492
TU226943 lncRNA upstream 13059 88784031 ~ 88784251 (-) True G200496
TU227205 lncRNA upstream 272279 89043251 ~ 89044998 (-) True G200714
TU227208 lncRNA upstream 275412 89046384 ~ 89048900 (-) True G200716
TU227216 lncRNA upstream 300120 89071092 ~ 89071566 (-) True G200724
XM_021575962.2 mRNA downstream 106606 88630479 ~ 88656952 (-) False LOC110499075
XM_021575972.2 mRNA downstream 106606 88630479 ~ 88656952 (-) True LOC110499075
XM_021575995.2 mRNA downstream 119329 88630479 ~ 88644229 (-) False LOC110499075
XM_021576004.2 mRNA downstream 119329 88630479 ~ 88644229 (-) False LOC110499075
XM_021575988.2 mRNA downstream 121264 88630479 ~ 88642294 (-) False LOC110499075
XR_002475058.2 mRNA upstream 35116 88806088 ~ 88807501 (-) True LOC110533889
XM_021576110.2 mRNA upstream 188400 88959372 ~ 88971921 (-) True LOC110499152
XM_021576137.2 mRNA upstream 281798 89052770 ~ 89069349 (-) True amfra
XM_021576146.2 mRNA upstream 308953 89079925 ~ 89100055 (-) True nfatc3b
XM_021576168.2 mRNA upstream 329285 89100257 ~ 89106727 (-) True dus2
TU225173 other downstream 1437089 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 1859602 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 2799893 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 2920065 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 835865 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 1606585 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 2818240 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 3016215 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 3627088 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile