RNA id: XM_036958488.1


Basic Information

Item Value
RNA id XM_036958488.1
length 4982
RNA type mRNA
GC content 0.49
exon number 27
gene id ankrd27
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89168314 ~ 89202963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACGTCACCTTTATTGCTGCTTTCAGAATAGTAGAGACTGGTGTTAGTGTTGACAGACATCGGTGGATCAGATGGTGACTTATGTTTACTGCAAGTCTTTTGCAGAAGAGCATTTTGGAATGCAATTCCTCGGGGTTTAGCAAATAGAGAGATCCAGATCCTTATGGCTGTGTATGATGAGAACCtcctgaagaaccctttttaccTGGCACTGGAGAAGCAGAGACCCGACCTGTGCAGCAGAGTGGCAGAGCTACATGGCATTGTTTTGGTGCCGTGCTGTGGAAGCATAACCCTTAGTGCATACACAGCATCCCAGTTTGAAACCTACGTTTTACACCCATCTGGAGAAGGGTATCAGACTGTGGATGGGAAGGAGCTGACCATCCAGGACAGCTTGGTGAGACTGGGCTTAGGGTTCCAGGCCCCAGCCAATGTGCCCATCCTGTTTGAGGAGACCTTCTACAATGAGAAGGAGCAGAGCTACAGTATCCTGTGTATCGCCAGGCCCATTGACACCAACCAAAGCCCAGGTATGGAGGTGGCCCCCAGCCCAGCCCCGTACTATCTGAAGAATGTGGAGGATGTCAGGGAGTTCCTGGGCCGCCATGTTGAGAAACTGGACAAGTTCATCAGCAGCTTTTGCCACTCATTTAAGGAGCAGGAAAAGAAGGGACTGCGACACCACATCGACTCTGTGAATTCTCTTTATACTAAATGTCTTCAGTGCCTGTTGAGAGACTCGCGCCTGAAATTGCTGGTCAAACAGGAGCTCCAGATGACTCTCCTCAAACAGGCGGTTGAGATGTATATACATCATGGTATCCATGATTTCATCTTTAATTTTGTGGGGACTCTTGAAGCCAGCCAGGATTCTGCCTTCAACAAAACCACCAGAGGCCTGCAGGACCTGCAGCAGAAAGACTTTGGGGTCAAATCTGAATTTAGTATAAATATCCCTCGGGCCAAGAGGGAGCTGAGCCAGTTGAACCGCTGCACCTCTCCTCTACACAAACTGCTCTGCCTCAGGAAGGTGTGTCTCACAATCATGCAGTCCCCCAGCCACTCGGTTAGTTTAGAGGCCCTGTGTGCAGACGACCTTCTGTCTGTGATTCTGTACTTACTGGTGAAGACGGAAATCCCCAATTGGATGGCCAACCTGAGCTACATCAAGAACTTCCATTTCTGTAATTCCACCAAGGAGGAGCTGAGCTACTGCCTGACGTCGTTTGAGGCCGCCGTGGAGTTCATCAGACAGGGAAACTTCGGCCTGAGCCAGGGAGGCGTGGGCTTAGGGGACCTGAATGACAAAGTGCATTTCACCCAGAAGATAAACCTGCTCTCCCAGAACTCTGCTACCCCCATAGACTGTCTGTTTCAGCACATAGCCAATGGTAACGAGGTAGAGGTCCAGCGTGTGTTGAGTGAGAACCAGAGTGACGGTGTAAAGAGGTGCCACCCTCTCTGCTCCTGTGACCACTGTGAGCTCCGTCTCTCTGGGAGCCTGAATGACCCCTCCATCATAACGCCCTTCTCTCGAGACGACAGGGGATACACACCACTTCACGTCGCTGCTATCTGCGGTCAGTCCCTGTTGATCGACCTGCTAGTGTCTAAGGGAGCTCTGGTGAATGCCACAGACTACCATGCCCTCTCACCCCTTCACCTCTCCTGCCAGAAGGGCTACCAGCGAGTCACGCTGCTGCTCTTGCACTATAAGGCTTACTCCGGTGCCCAGGATAACAATGGCAACACTCCTCTGCACCTGGCCTGTATGTACGGACACGAGGATTGTGTTAAAGCCCTGGTGTACTACGACCTGCACGTGTGCCGTCTGAACATCCAGAATGACAAAGGCGACACTCCCCTGCACATCGCAGCCCGGTGGGGCTACGAGGGCATCATTGAGGTGCTGCTGCAGAACGGAGCcagcaccaccaccaacaacaaggTCAACGACTCTCCACTACAATGTGCCCTCAACTCTAAGATTCTAACGCTATTGGAGTTGTCCCACAACGGCTCTCATAGAAGAGAGAACAATGATtcccCAAACCGTTCCCCCCAGGCCTCTGACTGCAGCAGCCGCCGCTCCTCTGTTTCCAGCACCACCTCCCAGAGCTCCGAGGCCAGACCCGACAGAGACAGGGTCCGACACAAAGAGGTGGAGAAGTTGCTTCGTGCGGTGGCAGATGGAGACATAGAGATGGTGCGGTACCTGTTGGAGTGGTTGGACGAGGAACCAGAGGAGCAGCATGCAGGGCTGCCGTCCTGGACAGAACTGTGCCACCCACTGTGCCAGTGTCCACACTGTGGACCAACACAGAAGAAGTTGGCGTGCCTGCAGGCCAGTGGTCTGAGTgtgaacagcagtagtgtggATGGCTTCACTCCTCTCCACGTGGCAGCGCTCCATGGTCACACGGCCCTGGTGTCCCTGTTCAGCCGCCACGAGGCCAATGTTGACGCACGCAACAGCCAGAGTGCCACGCCACTGCACCTGGCCAGCCAGAACAACCACATACAGGTAGTGACATCACTGCTGGAGTGCAACGCCAAGCTGAATAAGAAGGATCACTATGGCAACACCCCTCTAATCCACGCCTGCCTCAGAGGTCACCTGGACACAGCCACCATCCTgctacagAGCAATGCGTCAGTGAACCTGTCCAACAACCAGGGGAACACGGCCCTGCATGAGGCTGTGAGGGGAGGTCACCTGGCTCTGGTGGAGCTGTTACTGCAGGCTGGAGCCCTGGTCCACATGAGGAACCGGAGACAGAGGACAGCACTGGATTGTGGCAAGGAGACTGGGGGCAAGAACACTGAGATCCTGAGGATTCTTCAGAAGGCTTCTGGACTCTCCCCTGATGCTGAACCAATCAAACTTCTCTCTGTGCCCAAGGGGGCTTTGGCCCATTCATTTGTCCAGAGGTTCAAGCTCCATCAGCATAATACCAATGGAAGATGTCAGAAGCTGGCCCAGTCAATCAACAGAGTTCAGCAGATGAAGAAAGGTCTTCCCAGGGACACCAGTGTGCCTTCCATCAACTCACCCACTGCCCAGAGGAGGAAGCTGAGGCGGGGGGTGACCCTGGAGAGCAGTGGGCCTTTCAGCATCTGCTCCAGCCCAGAGGGAAGCCCCCCGCCTGGGTACCACAGGGACAGCGAGAGGGTCCTGAGCCACTGTCACACCGTGGACACAGAGCACCCCCCATTCCCTCAGTGGGCCCGGGACCTGAGACACACAGGAGAGGTTAAGGTGGACACACATGTAGCCGAAGACCCTTCAGACACTCCCGGTGAGcctgacatacacacacctgaCGTATCAAGTACACAGCTGATGGGCGTTCAAATACACACGCACAGCCAACGACCCCTCTAATACCCTACAAAAAACCAGCAGCGACCCGTTACACACACCTAGCCAAGTCAATGAAGGAGACAAAGACCGAGAAGGACATGAAAAAGATGTCCTCACCAGATACAGATTTACAGTGGAAAAGATGCTGTCCAGAGGCTGGTAGCTGACCCAAAGAGCTGGTAGAAGACCTGGTGGATAAATGGAGATCCTTTAAGGAACGTATGGTTGAGGCAGACCCCAGACGGGAGAACTTGCACCAAGTGGGTTAACCAGAGACGAGTGGAGCCTAGTTCTAGTTACAGAAAGAGGACTTCTATACTGACTGTTATTGAAAGCACTTTTTCACCTTGCCTTCAGGAAAAAAGGGTAACAAATCATGTTAATTCAACTTCATGCGAATGTCATTTCTGTTTtagtacattttttatttggtTGCTCACTCTTTTCTTAAAGAGAGTAGATCGAACGTTCTAACAGTGACATTATAGCATATCACGATGAAGAAAGTTGGTTTACTTGATAGGATCATCTGCATCTATGCTCCTCTTGCATCTGACAGGGTTTTATTTCAACATGTACAATCAGGGCTCTGTTTTTATTCCTAACAATTTAGTTTTTTTATTACACTTCTCAGGTTTGGATATCATTTTTAATTGACTGCGTTAGTTATTCCCTTTTTAGAAAAACCATCAATTCCCCTTTTCAACCCATCTATAACACATGACCTCCCTGGTGTGACATCTGAATGACTATGCACAGTAAGGCCACACTTGTATCCCACTGAATGTCACACACAGTTTTCTTGGTTGCTCTGTAGATAGAGGGAGCAATGTATAtacatctatatacagtgagtagcTCAATTTGTTGACGCCAGAAATTGTACTGTAGTTGTGTTACTATATTCTCAAATGCAGTACAACTGCCATAGACATTAACTACCATCTTTACTGTATTCTGATGTAACACATGCCATGGAAATGGGTACATGTAAAAACAACCACAATATATTGCAAAAAGTGCTTATTTATCATTCAGCAGAAAATTCTGTTTCACCTCTATGGCAGTTGATCCTGCCAAGCAAGACCATATAGGACCCAACCGATGCTATCGGGAGTTTGCACTTTACTCCTATCATTTTGTTTCCTGTCAACAACACTCTGAAATGTCTGTAGCTCTTTTTGAATTGACATGATTTTAAATGATCATTTTTCCAGCACATAACAGTATATTTAACACAAAAGACTAGCATCAATCAGCGTAcggatgaaataaaaatacaaggTGACCGTTTTGGTATATGCATTAGTAGTTATCCACTCCAATTTCAATATTAATTTATGTACTAAAgtattttattttgaatgttGAGGCAGTGAACAATAAATAAACCCATGATCTATTGTCATTTGGTCTGTTCTTTGCAGGTGTGGGCCAgttattaaaaaaatacatttgtgctTTAGGATCTATATGCTTGGTAAGTTTCTAATGTTATGACTTTTATACTGTTAAAATATTTTAAAGGGTCATTCTAGACTTGGTATGTACATTTTGGAGTGATACATTATATGTACCCATTTGATTCTTCAataaaatgcctcatgagctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227260 lncRNA upstream 20202 89147584 ~ 89148112 (+) True tdrd12
TU227163 lncRNA upstream 68280 89099659 ~ 89100034 (+) True G200685
TU227154 lncRNA upstream 76001 89088665 ~ 89092313 (+) True G200678
TU227142 lncRNA upstream 92745 89075362 ~ 89075569 (+) True G200672
TU227141 lncRNA upstream 93590 89074443 ~ 89074724 (+) True G200671
TU227448 lncRNA downstream 89617 89292580 ~ 89292872 (+) True G200928
TU227465 lncRNA downstream 107190 89310153 ~ 89310659 (+) True G200945
TU227569 lncRNA downstream 224746 89427709 ~ 89427934 (+) True G201044
TU227578 lncRNA downstream 227178 89430141 ~ 89430418 (+) True G201050
TU227589 lncRNA downstream 239499 89442462 ~ 89442713 (+) True G201061
XM_036958486.1 mRNA upstream 6222 89132933 ~ 89162092 (+) False tdrd12
XM_036934382.1 mRNA upstream 187875 88815803 ~ 88980439 (+) True LOC110502274
XM_021576056.2 mRNA upstream 409580 88750768 ~ 88758734 (+) True tmem168b
XM_021576065.2 mRNA upstream 417845 88738895 ~ 88750469 (+) False bmt2
XM_021576243.2 mRNA downstream 192094 89395057 ~ 89422438 (+) False LOC110499234
XM_021576253.2 mRNA downstream 267416 89470379 ~ 89472518 (+) True snx20
XM_021576322.2 mRNA downstream 297549 89500512 ~ 89502349 (+) True mphosph6
XM_036958500.1 mRNA downstream 352610 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA downstream 352611 89555574 ~ 89577445 (+) True LOC110499288
TU225538 other upstream 1300347 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1631386 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1671579 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2017824 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 2129078 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 216806 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1244155 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1513979 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2034062 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2163374 91366337 ~ 91539373 (+) True mgat4c

Expression Profile