RNA id: XM_021576253.2


Basic Information

Item Value
RNA id XM_021576253.2
length 1693
RNA type mRNA
GC content 0.48
exon number 3
gene id snx20
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89470379 ~ 89472518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTggtctctctgctttctcttgcTTCAGTATTGCGTGTACTACTATATATTCACACACTCCCtctttctgtatttttccatttattttttcaAACAGGGCATGTCAACAACCTTAGTTATAccgagtgtgtgttagtgtgcgcTTGTTTGTGCAGAGCTAGCAGCTGATTTCGGACTGAGCATTTCAATCATCTTCCCCAGAACTACTACTGTATGCTGACAAGGCCGGATGGCGGAGAGGGCAGTGCCACAAGAGAACACAGGGATCAATACAGGGATCCAACAGTCCAATGGTCCATACCCTGAAGCCACAGCTGAGAGCCTGGACCTTGAGGATTCGCATCAACAGGGCGCGTGTGTGTATGACCTGTGTCCAGGCCCCAGTTCATCCTGTATGACCACCAAAGAGCTGCAGCAGCACTGGGGTGCAGTGAAGCACAGACTGAAGCCGGTCAAGCTGTTGTTTGAGATTCCTTCTGCACGCACCATAGCGCAGCACCTGTCCAAATACGTTGTGTACCAGATCGTGTTGATCCGGTCAGGCAGCTACGACTCCAAGCGAGTGTCTGTCGAGCGTCGCTATAGCGACTTCGTCCACCTCCACCAGCAGCTCCTTGAAGACTTCAGCGAGGAGCTTGAGGAGGTCATACTTCCCCGGAAACTCCTAACTGGAAATTTTAACCCCGAGACCATCTGGGAACGCCGCCTGGCTCTGCGGGACTACCTGGCCCAGCTCTATGCAGTCCATTGCGTCCGACATTCCCACCACTTCCTGGATTTCTTCACTGAGCCCGAGCAAAGACGAGCGCACGGCCTGCTCCGAGCAGGGCAGTTTGGGCCTGCTGTCGCTCTACTAGAGACTGTCCTGGAGCTTCAGGAGAAGATGGGAGGGTGGCAGAGTCCTGTTCTGCTTGTGCCCACGCTGTGTGCCCTTACAGTGTGCCAGAGAGACCTGGAAGAGCCGGAGTCTGCGTTCACCATGGGCCAGAGGGCGCTGCCCACGGTAAGGCGCTATGGGCTGAAGCGCTACAGAGGGCCACTTCTGGAGATGATGGTGGATCTGGGATACCAGTTAGGGCGACCTGTGGCTCAGCTGCAGGAGGAGTTGGTTCAAGTTAGGGATGCAGAGAGGGGACTGTTGTCTTTTCGGTCGCTTAAGGAGTTGGTGGTACAGGAGTTTACCTAGGCCTGATTCAGTTGAGATAAGCATGCACAACTTTAAATTATCCAATGACATCAATAGGGGTTGTGCAAACACTTCCACCGGGGAGAACGTCCTTTAAAGTATAGACTTTATTCAGGAATTATAGACCTAGCCTTCTTTACCAGGGTTGAgccaattccatttaaattcaatcaattcaggaagtagAAATTCCAATTCAAGGGTCTTTTCAATAACATGTATGTTGGAGCACTCTTTTGAACATGTAAATGCAGACATGCCCCCCTGCCACACCCAACTATTTTCTTTCAAAACTGTATTTTAATAATGAAAGATACAACTTACATTTTCCCACTTACACCACCAGGGtcttaacatatatatatatatatatatatacatatataagtATCAATCAAAAGTGTAGACAAaacaactcattcaagggtttttctttatttttactattttctacattgtagagtaatagtatatacatcacaactatgaaataacacatatggaa

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17931 SNX20; sorting nexin-20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227599 lncRNA upstream 11291 89458862 ~ 89459088 (+) True G201071
TU227596 lncRNA upstream 16984 89453149 ~ 89453395 (+) True G201068
TU227589 lncRNA upstream 27666 89442462 ~ 89442713 (+) True G201061
TU227578 lncRNA upstream 39961 89430141 ~ 89430418 (+) True G201050
TU227569 lncRNA upstream 42445 89427709 ~ 89427934 (+) True G201044
TU227566 lncRNA downstream 21 89472539 ~ 89473610 (+) True G201041
TU227565 lncRNA downstream 3472 89475990 ~ 89476606 (+) True G201040
TU227573 lncRNA downstream 34109 89506627 ~ 89508008 (+) True G201045
TU227609 lncRNA downstream 57231 89529749 ~ 89530222 (+) True G201081
TU227610 lncRNA downstream 57973 89530491 ~ 89530766 (+) True G201082
XM_021576243.2 mRNA upstream 47941 89395057 ~ 89422438 (+) False LOC110499234
XM_036958491.1 mRNA upstream 267416 89168314 ~ 89202963 (+) False ankrd27
XM_021576322.2 mRNA downstream 27994 89500512 ~ 89502349 (+) True mphosph6
XM_036958500.1 mRNA downstream 83055 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA downstream 83056 89555574 ~ 89577445 (+) True LOC110499288
XM_021576456.2 mRNA downstream 256422 89728940 ~ 89740218 (+) False LOC110499364
XM_021576474.2 mRNA downstream 256422 89728940 ~ 89740218 (+) True LOC110499364
TU227536 other upstream 47941 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1602412 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1933451 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1973644 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2319889 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 974600 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1244424 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1764507 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1893819 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 2149483 91622001 ~ 91624293 (+) True G203414

Expression Profile