RNA id: XM_021576474.2


Basic Information

Item Value
RNA id XM_021576474.2
length 1644
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110499364
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89728940 ~ 89740218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACCAGAAAAGTGTAGGAGGAAGTAGAATGTCCCGTTATGAATCTCAAATCTAGTTATGGTTCCTTATTCAAGGTGAAAGCATCATCATATATTTGCTGAAATAATTTATAGATCCTGCAGTGTTCCAGGCTGTCAGGTTGTGTGTGGCGTGGCAGTGAGATGGAGAACCATGCAACAGCAGGGGCCGCCGTGGATGCATGCGGAGTGGACCAACGTAGCGATGAGTATCGACTGCTCATGGCTTACTGTGGCAAAAGGAAGAGGCAGCGGTCTGGCCCAATGCCTCAATGTCAAGGCCTCATTCAAAAAGAAGGTCCTCCTCCATCCAGACATAATGCTAGATTTTATGACACCGGTCCCATACACCGCAAATTTCAAGGTTGTGCTCCGTCCAGACATGGCCTAGTGGCAGCTACTGGAGCTGCAGGAGGAGAGGGCAATACCTTGAATGGAGTAGCAGACAGGTTGACTCAGATTGCAGACTCTGTGCAGATCACAACAGACGACATAGAGTCAGACGGGACAGAGGATCAACATGATGTCATCCGAAGACTAGTGGAGTTGTTGAAGGCATCTGGAGACAAgctgaatgaggagATCATGAGTAACCACATCTTGCAGAGGCACCTCCAGACTTCCTTCACTTACAGTCTGTTTGAGACGGTGACCTCCACCCTGCTCCAGGGAGTGACGGGGGTAGAGGGTGATGGTCCTGTAGCCCGGACAGGCTGCCCTGCCcctgagaaggaggagagggtccAGAGGGAGCAGATTGCCCTGGCCTGCGAGGTGACTAGCAAGCTATCTGCCCTGGACCTCCACCCCATGAGCCGGGCCATGGGCTTTGGGACACGCTACCTCCAGGAGCACCACACGACCTGGGTGAAGAAACACGGGGGCTGGAATAACGTGTTTGACAGTGAAGACACTGATTAGACCTGTCAGGCATTTCAGCTGCTTCAACCAGCCATGGGAACTCATTTACATTTTGCTGAATATTACATGTTTAATTTGCTCCTAAAACTATGGATTCACTTACTGTACTTACATTAATAAGGCTGTTTCTTAGTGAAACTGACTACATTTTGTTCATGTTAAAGAGATCCTTCAAAAGTTATGTACTGTTAGATATTGAACATTGGTCCCAATTTAGACTTGAAATAAACAGACTTAACATGGACTTAAGTCTCATTAGAACATGGACTAAAGTATTTTTTTATTGACTTAAGTCCATGTTAAGTCACCTTATCTCAAGTTTTTAAATATTAGGGCCTATACTGAATGTATAGCTTTCAAGATGTTTGGGTTTATCTTAacctctaaaatgacattgaacCTGTGATTTATGAATGAACTGCTCAGTGTGGATTATCAATGAATTGCCTTGAAATGGTTGTATGTGGGGATAAATCTAATGGTTAATACATTTCTGCAGCCAGTATGTGATGAAAGTAACAATAATCATCTTTAGATTGTTAGTTTTGGAAATTGTGTATGAACCTCTATCccacaaacatttttttttatattacaACATAAAGTCGTGTTAGTGGGATATGTTGCTATTTCAGTGGTGTTACTGTGATAAAGTACAAATTATTTGATACCATAAAGGAATTAAAGATTTATTTTGTCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227676 lncRNA upstream 12523 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA upstream 51615 89675961 ~ 89677325 (+) True G201176
TU227615 lncRNA upstream 193067 89535492 ~ 89535873 (+) True G201087
TU227614 lncRNA upstream 193450 89535201 ~ 89535490 (+) True G201086
TU227613 lncRNA upstream 195337 89533363 ~ 89533603 (+) True G201085
TU227783 lncRNA downstream 66707 89806925 ~ 89807763 (+) True G201235
TU227798 lncRNA downstream 81555 89821773 ~ 89822363 (+) True G201241
TU227800 lncRNA downstream 83478 89823696 ~ 89876082 (+) True G201243
TU227797 lncRNA downstream 142656 89882874 ~ 89883238 (+) True LOC110499409
TU227825 lncRNA downstream 158514 89898732 ~ 89898970 (+) True G201267
XM_036958500.1 mRNA upstream 151495 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA upstream 151495 89555574 ~ 89577445 (+) True LOC110499288
XM_021576322.2 mRNA upstream 226591 89500512 ~ 89502349 (+) True mphosph6
XM_021576253.2 mRNA upstream 256422 89470379 ~ 89472518 (+) True snx20
XM_021576243.2 mRNA upstream 306502 89395057 ~ 89422438 (+) False LOC110499234
XM_021576501.2 mRNA downstream 32381 89772599 ~ 89793099 (+) False LOC110499385
XM_021576509.2 mRNA downstream 32381 89772599 ~ 89793099 (+) False LOC110499385
XM_036958577.1 mRNA downstream 32381 89772599 ~ 89793099 (+) True LOC110499385
XM_036958605.1 mRNA downstream 90704 89830922 ~ 89883245 (+) False LOC110499409
XM_036958598.1 mRNA downstream 90729 89830947 ~ 89883245 (+) False LOC110499409
TU227536 other upstream 306502 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1860973 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2192012 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2232205 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2578450 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 706900 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 976724 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1496807 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1626119 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1881783 91622001 ~ 91624293 (+) True G203414

Expression Profile