RNA id: XM_021576488.2


Basic Information

Item Value
RNA id XM_021576488.2
length 3170
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110499378
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89751743 ~ 89763372 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGCCTGCGCTGCTACGGAAATGCGGAAGATGACTTGTCACTGTTGTTGTGGAAGCTGTCAGGCACGTGAGCTGTGCTACGTCGTCGTAAGTGGTAATAGGCGATATGTCGGCTGATACTCCTCCCAAGGTGCTATTTGAACATGAAGGTGTTTTCATTCACTCAAATACTGAAGCCAGTGAAGACCAAGATCTGCTTGTTTCTGGGTTCCTACGTATTATTGATAAGGATGGTGAAATCATTGTGGAATACAAACCCTTGGAGGACACTGTTGATCCATCCAACATGCTCTGTGCTGGCAAGGATTCCAGCTCAGTGATGGAGTGGGCCTATTGTCCTGGGGAGGAGAGGTCGTCACCTCAGCAGGCCGTGGTGCTGGAGCAGCAGCAGAGCTACGAGACCGAGTGGGACATGATCAACGCAGTCTCCTTTCCCAAGAGGAAACCCTGCTCCAACGGAGAGGGTGCATTGAACCACACACATGAGAAAAGCAAGTGGTCCTTCACCTTCAGTGTGTGGGACTTGAGGTCTATCACAGTGAAGGAGGAAGGCTGGTCCCGTCTGGTGTTCGGAATGAAGGAGCCACCCACCCTACTGCCATCCCTCCACTTCCACCTGGGGGGCAGTGAAGGCTTCATTGACTGCCTGAGGAGATACATCATAATCACAGAGGCCCCAGATGATGAAACCTGCCTGCTGGTCAGCACTCCCAACCGAGCTCTCTCTCAGTCCTTCGAGAACCTTTTGGACGACAACAACTACGGCCTTGTTACTAAGCTGAAGAAGGATCCCTATGTGACAACGTTGGGCGGCTTCTCCAAGGTCACCAACTACATCTTCGATGCGTTCCGCGGCCCAgagctggagcagcagcagcggAAGCCCCATGAGGAGGTAGCTGACCTGGACATCCTGGGACTGGGAGAGGTCATCCCTGGCCTGGAGATCAACCAGCAGGAGGAACCTGGCTTTGAGGTTATCACCAGGATGGACCTGGGCGCCAGGCCAGAGGTAACAAGGAGGGAGCCACTGTCTGCAGAGGACTGGGCTAAGCACCAGGACCAGGAAGGAAGGGTGGAAAATGTCCCTCAACTCAAGAAAATCATATTCAAAGGCGGCTTGTGCCATGCGGTGAGGAAAGAGGCCTGGAAGTTTCTGCTGGGGTATTACACCTGGGACAGCACCTACGACGAGCGGAAAGGCCAACAGAGGAGGAAAACGGATGAGTACTTCAGGATGAAGCTCCAGTGGAAGTCGGTGAGTGAGGAGCAGGAAAGGAGAAACTCCAGGTTAAGAGACTGCAGGAGCCTGATAGAGAAGGACgtgaacagaacagacagaaccaACAGGTTCTATGAAGGCATAGACAACCCAGGCCTGGTGTTACTACATGACGTCTTGATGACGTACTGCATGTATGATTTTGATCTGGGTTATGTTCAGGGTATGAGTGACCTCCTCTCCCCGATCCTCTATGTGATGGACAACGAGGTGGATGCCTTCTGGTGTTTTGTCTCCTTCATGGATCAAATGcaCCAGAACTTCGAAGAGCCGATGCAGGGCATGAAGACTCAGCTGATCCAGCTCAGTACTCTGTTGAGGCTGCTGGACCTGGCCTTCTGGAACTACCTCGAGTCACAGGATTCAGGTTACCTGTATTTCTGTTTCCGGTGGTTACTGATCCGCTTCAAGAGGGAGCTCAGTTATCCAGATGTCCTTCGTCTGTGGGAGGTCATGTGGACTGGCCTGCCCTGCCAAAACTTCCATCTGCTGGTGTGCTGTGCCATCCTAGACTCAGAGAAAAGGAAAATCATGGAGGAAAACTATGGCTTCAATGAGATCCTTAAGCACATCAATGAACTATCAATGAAGCTGGACATTGAAGAAATCCTTCACAAATCAGAGGCTATTTGTATGCAAATCAGAAGTTGTAAGGATTTGCCTTATTCAGTAAGTGAGATCCTGGGATTCAACACAGAAAGCAAATTTCCCAGATTAGAAGGGAGGGAGTTTGGAACTCTTGATTCCCCCAGACCCACACAAAGACAGGAGGTCTTCTCTAATGGTCACAACAGACATTACAGAGAACCCCCTACTCACAACGGCTGCAAAGTCTCCTTCATATCATAGTGAACAATATCATTCACACAGACTTTGCAATGTCCACATACCAGAAAGAGTATTTTGGATTCAGTTATTGGATAAGTTGGTAACTGAAACCAGTTTATCAAGTAACTATAAGAAGAAATTTGAAGAGAAAAGaatgaaaaaaatgatttaaattTTTTTGTACCATATTGTCTTTCATTGAAATGGTAAGTCATTCCTTCAATCCTTGCTAAGGATATTTTGTAAAGATGGGCAAGGTGAGTTTGCATTGTAAAGTTATAATGTGCTGTTTTTTATTTAAACTATAACCTTTTCCTGAGTCATGCGCACAAGTATTAAAATCTAGTCCTGGGATTTCAATGTTTATTGATTCAAATTTTGAAAAGTTAAGGAAAGGCTTACAGAGTTAAGATTTGTCCAAATATGAATTTGATAGTATATGACAAAAGGCTGTACAATATGTGTTGTCTTGAGGCTCTGTGATAATAAGACACTTTTGAAGATTAAAATATTTAGAACAAAACAAAAACCAACATGTCCTTGTTACTCAGCTTTACCAGTgaattcaaataaaaaatatagccTTTGATTGTGTACTCAAACATCAGTACTAATGCGTTTATTTAGGTCCATAAGATTGGACCTTTTCTTAGTGATGAAAGATTTCATTTTAACTCTCATTTCATATGTATCTGGTACTGTATTGATAAAGCCTCTTGAGTAGAAGGATCCGGTCCCACCTCGTAGACGTGGCCCAAAAATACTATTTGAGCAAGGTTGGGTCCAGTCCACCCACATCACTTGTATGTAACATTTTCCTGGAAGACTTCCTTTGACCATATTTGGCAAAAACTCAAATTGATTTTTGGGCTCCAAAATATCAATGGTATTACAATTTTGTTGACTGTTTATACCATAGTATTAAAAAATGGTTTTGCTTGTTCTCCAACTATTTTAATTGTGGACTGTCTATCTGTCCCAGGAGGAAAACAGTAGTGAGTTCTTCAGAACTCATTGAGTTGTGGACTATTACTTAAGGCAATAAAAGCAATCCTTTTAA

Function

GO: NA

KEGG:

id description
K20168 TBC1D15; TBC1 domain family member 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228228 lncRNA downstream 74278 89676031 ~ 89677465 (-) True G201627
TU228150 lncRNA downstream 156728 89594592 ~ 89595015 (-) True G201561
TU228132 lncRNA downstream 174318 89573954 ~ 89577425 (-) True G201544
TU228126 lncRNA downstream 192705 89558299 ~ 89559038 (-) True G201540
TU228100 lncRNA downstream 283595 89463194 ~ 89468148 (-) True G201515
TU228275 lncRNA upstream 12127 89775499 ~ 89777092 (-) True G201667
TU228266 lncRNA upstream 15730 89779102 ~ 89780286 (-) True G201664
TU228283 lncRNA upstream 18422 89781794 ~ 89785665 (-) True G201673
TU228281 lncRNA upstream 25514 89788886 ~ 89789501 (-) True G201671
TU228307 lncRNA upstream 68782 89832154 ~ 89833151 (-) True G201697
XM_021576444.2 mRNA downstream 3598 89740189 ~ 89748145 (-) True tph2
XM_021576422.2 mRNA downstream 42513 89610237 ~ 89709230 (-) True LOC110499336
XR_005039453.1 mRNA downstream 104229 89647462 ~ 89647514 (-) True LOC118944147
XM_021576433.2 mRNA downstream 143165 89607254 ~ 89608578 (-) False LOC110499346
XM_021576411.2 mRNA downstream 164598 89577794 ~ 89587145 (-) True LOC110499327
XM_021576530.2 mRNA upstream 29747 89793119 ~ 89820854 (-) True LOC110499401
LOC110499439 mRNA upstream 138135 89901507 ~ 89922720 (-) False LOC110499439
XM_036958645.1 mRNA upstream 281324 90044696 ~ 90125003 (-) True LOC110499460
XM_036958757.1 mRNA upstream 433859 90197231 ~ 90230851 (-) False LOC110502310
XM_036958750.1 mRNA upstream 433859 90197231 ~ 90230853 (-) False LOC110502310
TU228163 other downstream 141853 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 2425274 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 2847787 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 3788078 85959845 ~ 85963665 (-) True G197554
TU223549 other downstream 3908250 85836299 ~ 85843493 (-) True G197498
TU228979 other upstream 614185 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 1825840 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 2023815 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 2634688 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 3198672 92962044 ~ 92962934 (-) True G205192

Expression Profile