RNA id: XM_036958577.1


Basic Information

Item Value
RNA id XM_036958577.1
length 7451
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC110499385
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89772599 ~ 89793099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTTTCAAGTGCAATGGGAAGTATCGCGAGAGCAGCGGGGCAGAAGGGGAAAGCGGAAGAGCGTAGCTAGTTAGCGAACAAGCTTTATATTCGTTAATATTTACATAATATCCGATTTATAAATCCAATTTTGTAATTATAAACATATGTTGAGAGTCTAAGTATTAATCGAACTACTGTCACATTCGATTAGACTACACAATGGATTCAAAGTCAATCAATCTGTCTCCGAGAGAAGAAGGGGAGCTCGAAGACGGAGAGATCTGCGATGATGACACCGAGGAAAAGGTGTTTGCGCAGCAGCAGGGTAAAAAGAGGCCTAGTAGCATGAATAACAGCAACTTCTCACGGAATACACGAAAATCGAAACAACCGGTACGAACTTTACTACCTGTCGTGGGTAGCCAGCCTACAGATTTTCGACTTTTAATTCCATACAACCGCGGACCTCATTCGCACAGTTCCGGCTTTACCGCAAACCACAGACAGCAAGGCGGACCAAGTGGACCCGACCGGCCGCCACTGGGACCACGCTGTGACCAGAGCCCGCGTTCCAGTTTCTGGGAACGAAGTCACACAGCCCTGGATCGATTGAGGCACCGGGGGAAACTAGATGACGGTCGCGGGGATTGGGGACGAGGAGGCTGGGGAGACgggtgtgggggagggagagaggctggtAGGCCTCCCACTGGTCGTTATGGGCCCGGGGAGAATCACAGTAACAAGAAAGAATCTCCCTCGAGAAACAAACAGAAGGTAATGATGGGAAGGAATCAGGTAAGAAACCAACAGATGATGAACAACAACAATGTTGCCAAAGTCGAGAACGGGCTTGACGAGAGTTTTGAGGATCTGCTCACCAAGTACAAGCAGATTCAGCTGGAGCTGGAATGTATTAGAAAAGAAGAGAACCTGGTTCTGAAGCCCAAAGACCTGCCAGCTCAGAACGAGTCTGAGGTCTCTGCAAGTATTCCCCAAACCGAGCCATTACTCGACGCTAACAGTATTCCCAATGAAGCCGCTGCAGAGGACCCGCCAGGCCCAGAAAAGACGGAGGAGAAAAGGGGTTTTCAGGCGTTCAATCTCAAACCTCTACGTCAGAAACTCCTCACTCCTGCAGAAATTGACGCGCTCAAAACAAAAACGGAAAAGAAAGACTCAGAGAAGGAGGACAGTGACATGGAAAAAGGTCAAGTTGAACCAGCTGCTATCCCGGCTGCTACTCCCAAAGgagaggaggaaaaagaTGGTGTGGAGAAAGAGGCAGAcaaaaaagagggggagaaggatgCAAAAACATGTTGTGTTTGCTGTGGCAGGGAATCAGATTACCTGAAGAAAGAAGGTGAGAAGGATACAAAAGTCTGCTGTGTGTGCTGCAGCAAATCATCAGAGGACTCCACTAAATCCTCTTTCAAGCCTGAAGTGAAGGGGAGTAATGAAGATGAGGACCTGTCTGAGCTGCAGCTGCGTCTCCTGGCCCTGCAGTCAGCCAGCAGGAAGTGGCAGCAGAAAGAACAGCAAGTGATGAAGGAGAGCAAAGATAAGATCACCAAGGCCAAGCCCTCCCAGGAGAAGAGCTCCTCCACCTCCAGTGCCAAACCACCAGAGAGGGGCAGAGTCACAACCAGGTCTGCCTCTGCTGCCTCGGAGAAGGCCAAAGCTCTGGCCAACAAGCCCCAGGAGAAGACCAAGGCTGGGGCAAAGCCTCCAGCGGAGAAGGGCAAAGCTCCGGTTAAGGGGTATCCAGGGAGGAAGACAGTCAGCCCAGGCTCAGCAGCCAAGCAGGCGTTCCGAAAGCAGCAGCTAAGGACGTGGAAGCTCCAACAGGAGAGAGATCAGGAGGAGCAGCgtagacaggaggaggaggagcgccGCCGGAGGGAGGAAGAGATCCGCAAGATCCGGGACCTTTCCAATCAGGACGAGCAGTACAACCGCTTCATGAAGCTGGTGGGCGGGTCCAAGCCGCCGCGCAACCGGAGCAAGTCCAAGGACCGAGACCACACCAGGAAGTCTTCTGGTAAACAGGGATTGGACACCTCAGGGAACCTCTACCAGTACGACAACTATGACGAGGTTGCCATGGATACTGATACGTCTTCTCCAGTACATGATCCATTTGAGGTCCCAGGATGCTTCAGTCACATGCCCATGCCTTTCCCTATGGATTCCCCCACTCAATGCAGAATGGATTTGGGACAGCCGCGTTTCTTGTCCGTCATTCCGTCTGCGCCCCCTCCACCCTTACCCCCAATGCCCCCACCCCCAGATGAGCTGGAGCCTCCCCCAAAGCCGCCTTTCGCTgacgaggaagaggaagaggagatgtTGCTCAGAGAGACCTGCCTCATGTCCATGGCCAACAAGAAGGTTCCACTACCCGAGGATATGACCCTTGACAGcagccccctctctccctccctcctggtcAGTCTGGTCCAACCAGTGCCCAGGAGCAACCCTAGTGTGGTCAGCCTCAACACGGCACCCCAGCCATGGAGCAACAAGTTCAGCCGAGGGCACCACCTTCCCAGGCTACCACTGATGCTCCCACGGCACAAGGCGGTGGTGGTACAACTGAACGGTTCAGACGACAGTGACTCAGACATGGAGGCCTGCAGCAGctctacacagacacagtctGTCTTTGGAGGCCTGGAGTTCATGATCAAGGAGGCACGCAGGAACGCAGAgGCAGCGAAACCCAAACCGACTTCAGGATCTGAGAAGGAGAACAAGCCAGGCAGAACCCCGGAGGTGCTATCTGAAGAGAAGAAGACAGAGTATCAGCTGCTCAAAGACGAAATAGCCAGTAGGGAGAAGCAGAAGATTCTGAAGGACCACAGTCCCCAAGGTGTGCCCTCTCCTGCAGGCTCTGATCCTGATGTGGACTTTGCTGCAAAGGCAGCGGTCGAGCTGCAGCTGACCGAGGCAGAGACTAGGCTGACTAAACACGGGAACCTGCTCCTGAAGGATGAGGCCATCCTGAGGCAGCTCTTACAGCAGGAGCAGAAGAAGGAGGAGGCATTGAAGGCAGCTGAGGCCAAAGTGGCCAAGGTCAAAGAACAGCTCCTGGCCTCAGAGAAGATAGTCAGTGCCAACAAGACTCTCCTCAACAGACTCCAGGAACAGGTTCATCGTGTTCAGCACCGTGTGTCAGTGAAGAAGAACCACAGCCTGAAGCTGGAGGAGGTGCTGGTCCAAGCCCAGGCCGCCGCAGGCAGAAAGCCAAGTGGTCAGAAACGACGCACGGGCATCAGCCACTCCTCGCCTGTGAAACGTCTGTGTGTGGAAGTCTCCGTCGCTCCCCGCGGCTCAGAAAGGCACTTCGCCGACCTCCTTGCCCAGAAGCAGCGTCTGCAGCAGCTGGAGTCAGAATACGCCCTCAAAATCCAGAAACTAAAGGAGGCCCAGGCTCTCCACAACAGAGGGGCGGTCCCTGAACCCCCTCTACCCCAGGccacctccacccctctccccagGGCTCGCCACCCCAGCATTCCCCCCACCAGCCCCTTCCCCCTGCCCCAGCCCTCCCTGCATGACCTCACCCAGGATAAACTCACCCTGGTCAGCAGCGAAGACCCTAccgagacggaggagagagactTGGAACCTGCCGCCACAGCCAGGCCCTCAGCCCAGAGTGTTCGTAGCCGCTCCTTCAGAGAGACCGGCTCCTTCACCAAGCCTAAGCTGGACTCTGGTGGGACTGGGCTGGTCAAGGATAGTCCAGCCAAGCCAGTCAGGGTTAAGGCCTCGGGGCCCGGGGAGCTGTTCCTGGGGCTAGAGGTGGAGGCCCTGCAGAGGAGGGACCAGCAGCAAGCCAGGCTGGGAGAGCTGCTGCTGGGGGAACTACGGGCGCTAGGAGGCGCTGTGGAGAAACCCCCTTCTGGGAAGGTGATATCGGAGGATGTGGACACCATGGCTGCCCAATCAGGCCATGCCGAGCTGAAGCCTGTCCCGTTTGGACCATATCGCAGCCCTCTCCTGGTCTTCAAATCTTATCGGTTCAGTCCATACTTTCGGACCAAGGAGAAGTTATCACTCAGTTCTGTGTCTTACAGCAATGTTGTAGCGCCCAAAAAGTGTTTCTGTCGCTTTGATCTCACGGGCACATGCAATGACGATGACTGTCAGTGGCAGCACATGAGAAACTGCACTTTTGGTGGAAACCAGCTGTTCCAGGATATCCTGTCGTACAACCTGGCCCTGATTGGCTGCTCTGAGAGCAGTACTAGTGATGTCATCAATGTTGCCACAGAGAAGTATATAAAACAGCTGTTTGTGGCTAACAATGATCGCATGGGGATGGACCAGAAGGCTGTTCTACTCGTCAGCAAAGTGAACGAAAGCAAAAGACATGTCCCTCCCTTCACCACGTGTAAGGATCTCAGGAGGTGGAGGCCTCAACCCGCTTACCAGGCTAGCCCAAACACAGGGGACGACAGCTGGGACGAGAGTAGAGACACTGGTCCAGTCAAATACGACGGTTATTCCAAGAGAAGTCTGTCTGCTAccctggatgtgtgtgtgaccCCTGACGACAAGCGCTACTTCATTAGTGAAACTGACGACATATCTAACCTGGAGACCAGTGTCCTAGAGAGCTCACGCAACGCACAGCTCTGGATCAAACTGGCCTTCAAATACCTCAGCCAGAAAGAAGTGTCAGCGGCTGAGTGCCTGGATGCTTCGTTGAACACTCTGTCTCGGGCCCTGGAAGATAACCGGGACAACCCAGAGATCTGGTGCTATTACCTGTCTCTGTTCTCCCGTCGAGGGAAGAGGGATGAGGTGCAGGAGATGTGTGAGATGGCAGTGGAGCACGCCCCCGACTACCAAGTCTGGTGGAGTTACCTAACCACGGAGAGCTTGTTTGAGGGGAAGGACTATgtgtgtggtcgtctgctgcagtACCTGCTGGACTGTGTGGGGACTAGTGGTCTCTCTGAGAGGCTGTCCTTCCAGCTATTGGAGTCTCTACTCTACAGGGTCCAACTCAGTGTGTTCACAGGCCGGCTACAGAATGCCCTGGCCATCCTACAGAATGCCTTGAAGTCAGTCACTGAGCGGTGCATTGCTGATTACCTGACCATAAGTGATCGTTGCCTGGTCTGGCTGTCCTTCATCCACCTGACTGAGTTTGACCGCCTGCCGGCCAGTCTGTACGACCCGGCTAACTCCAACCCCTCCAGGGTGGTCAGCATTGAGGCCTTCGCCCTCCCCTGGAGAACCCCGCTCGACGTCCGCACAGAGCCTGACACACTAATCGCTGTGTTCGAAGATGCACTGCGACAGTGCACAGACCAGACTCTGCCTCCCAGTGAGAGAACCCTGGCCTGTCTGCCTCTACACACTAACCTCATAACTACCTATAGCCTGCTGGGAAGGTACGATGCAGGCCTGGAGCTGTGTGAGTCCCTGTTGGCGCTGTGCCCGCATTCATGTGCCCTGTTGGATGCCCTGTCAGGCCTGTACGTGGGGAAGGGGGATGGTGAGCAGGCTGTTGGGGTGTGGCTACGGGCGCTGTCCCAGTGTCCACACAACGCAGAGGTCTTCTACCACACCTGCAAGTTCCTCATGGCTCAGGAGAAGTCCAGCTGCATCGCTCCTCTGTTCCGGGGGTTCGTCCTGTCTTTCTGTGACGAGGAGAGAAGTGACCAGCAACCTGTGGATGTGCTACAGTACATCCTTGGTATTCCAACAGTGGACATCCTAAGAGGCCCAGTTATCAAAAAACAACTTAAAGAGCAGCTTAGCCACCAGATGCCTTACCTAAACCTCGTCCATTGTCTGTGGCAGTGGGTGCACGGTAACGTTGGCGAGGCGATGGATGCGTTTGAGAGAGCCCTCGGAGCCGTAATGCCACTAGACGTTCTTCACAAGCTGTGGATAGATTATCTCCTCTTTACCAGCAGTAAGATAGCTGGGAGCCCCTCCAACAGCAGAGAGCTCCGGGTGTTATCAGACCTGGTTCAGCGTTGTCTAGTAACTGTCCCGTCTAGGCTTGAGGTTCCGTTCAGCTCGGCCCAGTACTGGAGCTGCTTCAGATTTCACAACAAGGTTGTCTCCCACTACCTGAGCTGTCTGCCTCATACCCAGCACCCCCACGTCCTGGAGAGACTACGATACACCATGCCCACCAATGCTGAACTTGCCCTGAGGTTGCTGCATCAAGAATGGCAGGATGGAAACATAGAACATCTGAAATTCCAAGCCAGAATGTTGAGCAGTAGCGTTCCAAACTGTCTGGCCAACTGGAAAATAGTGATCGCTGTGGAGAGGGAACTAAAGGAGCGCTCCGAGGTCCGGCTTCTTTATCAGCAAGCCCTGCAAAACCTTCCactgtgtgccaccctatggaaAGATCGCCTGCTGTTTGAAGCTGCGGAGGGAGGTAAAACTGATAAACTGAGGAAACTTGTTGACAAGTGTCAAGAGGTGGGAGTGAGTCTAAGTGAGCCCCTAAATTTATGCTCGAGCAAAACGGAGGGAGAGGAGCACTGAGGATCAAAAAAAACTAGATTCAATCTATCAGACCAGACCACTGCCAAGTTTAGCCAGATAGGGGCAGACTCTGCTGCTAGCTGTCTTAGCAGCCCTCCCGCAGTAGCGCACTCCCTGGGCGGTCGGGAGGTGTCCGCCCCTATGAGGACGGTTGTTCGGTCATCCCTGAAGCCAATGAATGaactccctcctccctgtccaaACTCTGGGCCACGCACTCAGGGTTCTATCCCCTAACATCATGTACGTAAGTATAGACCTGCTAACTAAGTGACATCTTTGCTCTTCTGTTTTTCAtttacatgtttgttttttctctcGTACTGTCAATTTtaatttgctttttatttttacctttatgtaCGGGGTTGGAGGAGTTGACAGACTATGACATCCTGACATACGTCTGTCTTGAGTGTTTTTTAAAGGATGTTTTCCCCCAATAGTAACGCTCGCTGCTGCTATCTACAGTATGTGTAACTTTTTGTTTTCCAGTGTCTTCCAAGGGAAGAAATAAATTACTCGTTTATTTCGATATTTGTTTTaagtgatatttttttttttttaaataaccacaTGAAAATGAAATGGCCAGCCATGGTgacaacaaaatggctgcctgcATAAGTATTTCTATTTGGCCTCTATCATCACTGACACCTTTATTTTTGAGACTGCCAGCCACAGACTGCTGAATGCTGTGATCTCCTCTCCGCCAGTCGACCAGCGGGGAAGATCCTTTAAACGCATCACTAGGCGAGGATAGTCAAACATTTACTAGTTTAAATGTTCTCATGTGCAATTTTgtttttgtaaaaaatatattataatggTTAAGAGTATTTCAGAGGAGGAGCCAAGGATGAAAGTATTTCAACTGTTTTTGTATGTTGAAATTAAATGTGTTTATTAAATTATTTTCTAATTAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227676 lncRNA upstream 56182 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA upstream 95274 89675961 ~ 89677325 (+) True G201176
TU227615 lncRNA upstream 236726 89535492 ~ 89535873 (+) True G201087
TU227614 lncRNA upstream 237109 89535201 ~ 89535490 (+) True G201086
TU227613 lncRNA upstream 238996 89533363 ~ 89533603 (+) True G201085
TU227783 lncRNA downstream 13826 89806925 ~ 89807763 (+) True G201235
TU227798 lncRNA downstream 28674 89821773 ~ 89822363 (+) True G201241
TU227800 lncRNA downstream 30597 89823696 ~ 89876082 (+) True G201243
TU227797 lncRNA downstream 89775 89882874 ~ 89883238 (+) True LOC110499409
TU227825 lncRNA downstream 105633 89898732 ~ 89898970 (+) True G201267
XM_021576456.2 mRNA upstream 32381 89728940 ~ 89740218 (+) False LOC110499364
XM_021576474.2 mRNA upstream 32381 89728940 ~ 89740218 (+) True LOC110499364
XM_036958500.1 mRNA upstream 195154 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA upstream 195154 89555574 ~ 89577445 (+) True LOC110499288
XM_021576322.2 mRNA upstream 270250 89500512 ~ 89502349 (+) True mphosph6
XM_036958605.1 mRNA downstream 37823 89830922 ~ 89883245 (+) False LOC110499409
XM_036958598.1 mRNA downstream 37848 89830947 ~ 89883245 (+) False LOC110499409
XM_036958594.1 mRNA downstream 42868 89835967 ~ 89883245 (+) False LOC110499409
XM_036958608.1 mRNA downstream 47213 89840312 ~ 89883245 (+) False LOC110499409
XM_021576555.2 mRNA downstream 90258 89883357 ~ 89894419 (+) False LOC110499418
TU227536 other upstream 350161 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1904632 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2235671 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2275864 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2622109 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 654019 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 923843 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1443926 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1573238 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1828902 91622001 ~ 91624293 (+) True G203414

Expression Profile