RNA id: XM_036958608.1


Basic Information

Item Value
RNA id XM_036958608.1
length 7914
RNA type mRNA
GC content 0.52
exon number 34
gene id LOC110499409
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89830922 ~ 89883245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAACATTTCAATCGATTTTGAATTTGTGAAATTCCATAAAGAACGCTCAAAATCATATTTGCATGCATATTTGTACAAGGAACGTTAAAGGCAGTGAAGCTTGGAACAGACCTTCTGAAAGAAGGGCTATAGTAATGGCAAATAGTAATATAGAATATATTAGTCATATTCAAATAGTCTTTCAACAGAGTAAATTCTGCAATCACAATAGTAGGCTATGAATTACACCCATGTCATGCCCTTTTAACCTACTGTATACTATGGGTGTTAGTTTAAGTGGACCTAAAGTTCTTCagacagaggaggcagagaggcagacaggcaggaaggAAAGTAGGGTGGGGTATCACGGGGAGAGAAGGAGGCTACTCAAGGTGCTGCTGTCCAGACTCAAGTGAAGGTTAAGGCTGTGAGCAAGTAGACAAACTATTTGATAGGAACTTAGGCTACTGTAGGTGTTAGAAAAAAGTGTATATAGAGGGCGGAAGTAGATGCTGATATGGAATCAATTTCCTGAGCAGTCTGTCTACCTGACGCCGGTGATGGTGCAGCCTGAGCATTGAGGAAGGGTGTAGGAAAATCATGTGGACTAGAGATTGAAAGTGACGAGATGGTAGCGTGGGAAGAGACTGTGCGTGGTCTACTTTGCACAGATTTTGGGCAACCACAAAATCACAACGAGATGCCATGCTTGGTTAGGCACGTGCCACCTGTAGCCGCCTCCAACATGCCATTGTGAAATTcagaaaataaatatacattGTTATTTCATGGACCGATTATGACAACCAATGTTGGAATATAtttgattattatttatttttatttattgaccTAACGGATTTAAATCAACGACCGCAATGTTCAGATGTGCAACTATTATTTTGATCGTTTGTTTATGGTGGCGTTGTGTCGAGGCCGATACCACTAATGCTGTCAAATGTTCAGTCAACCTGACAGAGACCATCGCCAGGACGGATTCTATTGCACTCAAATTAATAACAACAGGAGAAGCTTGTAATTTTACCGTGTTTTATGAGAATAGTCGTTCCGATATAACGGATTGTGATCTATATGGGCAGTATAGTAATGTGTATATCTGCGATATAAGGGATTTAGAACCTGGGACGTTACACCACTTTGAAGTGATATCGAagactgatggagagaggagaaacgtATCAGTGCGAACGGaTCCGGTTAGTCCATCCAGGTTGGACGTCCTACCAGACCAGGTCCAGGCAGCTCAGTATAAGAGTCAGGGTCACGGTGGCTCCCCAGGCCTGCATGTATCCTGGCCTCGCTCTCGCGGGCTGGTCGACTGGTATGAGCTCACACTACAGGACACTAAAACAGGAGAGAGCCGCAATACTCGCATCATGGGCACTGCCGTCCCTCAGTTAGGCTTTACCGCCCTCACCCCTGGCACCCTCTATGGCCTCAGCCTTGTGGCAATAGCTGGGAATAAAACTGCCCCACCAGTGCTGGCCACTGCAACCACAGctccctCAGCCATCAGCGGCCTCCAGCTCTTGGCCTCCTCCAACAGCCTGGGGGTTTCTTGGCAGCCCGGCCCAGGCAGGAGAGAGCGTTTCAGAGTGCTGCTGAGGGAGCGGCAGGGCAGCCTGGTCAGGAACGTCACCCTGAAGAGTAGCGTCACCTCCCACATCCTTAATGACCTGTTGCCTGGGACACTGTACACTGTCACTGTGGTGACTGAGGCTGGAGGCCTTCAGAATGCTGTCTTCAAACAAGCAGTCACAGTCCCCGCGGCGGTGTCAGACCTCCTCTTGGAGAACAACGGCAGTCTGGACTCATTGAGGGCCTCCTGGGTCACAGCTATGGGCAGCGTGGACACATACCTGGTCTCCCTTGCAACCCGGGGTTCAGCCGATCAGGACAGGACGCTGCCACCCAATGCCACAGAGGTGGTCTTCCGCGGCCTGACCCCTGGACGATCCTATCAGTTGTCTATGAGGTCAAAGGTTGGAGACCAGATGACTGAAGCTGTGACCGTGGGTAGAACTGTGCCAGACAAGGTGTCTCAATTGACCATGGTGGGCCTCAGTGACGGCAGCACTCTGAAGATGACATGGTCACCGCCTAGAGGGGAATGGGAGAACTACCGCATCCTGCTAATGAATGCCACAGTGGCTCTGGTCAATAAGACACTAAGCAGGCCAGTGAGACAGTACTCCTTCTCTGGGGCTTCCCTGGGGCTGGTGCCTGGCAGGCTTTACACAGCTCAGATCATGGTGGAGGCTGGCCCATTTGGCAACATTGCTCACTGCCAGGGAATGCTAGcaCCTCGGCCTGTCCAGCAGCTGGTCGTCTGTCACAGTGATGAGACGTCTCTGAGCGTGCTGTGGTCTCTCCCCGTAGGGGAGTGGGATGGGTACACTGTGGTCCTGAGACAGGGGAACACCGTTGTGTCCCAGAGGACACTGTCCCGTGACGCCAGGGACTGCACCTTCAACGTCCTCACACCTGGACGCCAGTACGCCATCACTGTCACGACCAACAGTGGGGGCCTAAACAGCTCAACTTCAGTGATTGGACGAACCACCCCAGCGCAGGTGACCAGTCTGCGTGTGACCAACGGTGGCAGCACGGACAGCCTCCAGACCCAGTGGGAGCAGGCAACCGGAGAGCTGGACTCATACCACGTGCTGCTCATCCATGACAGCAGCGTGATCAAGAACGAGAGCGCCCCAGCCCACACCATGGCCTACAGCTTCCTGGCCCTGAAGCCTGGAGCCCTCTACAGGGTGGTAGTAACCACCATCAGAGCAGGACAAGCCTCCAGGCAGAGCGTGGCAGAGGGACGCACAGtccctgctgccGTAGGCGAGGTGACGGTCAGCAACAACGGTCGTATGGACTTCCTCAGCGTGTCATGGCGTCTGGCCAAAGGTGACGTGGACAGTTATCTGGTCACTCTGGGGGACCAGGAGAAGACGGTCCACACCCTGGCCGTGTCCAAATCCAGCCCAGAGTGTGTGTTCAAGTCCCTGGTGTCTGGACGGCTCTATAACATCTCCATCACCTCCAGGAGTGGTGCCTATGAGAATCACACCATCGTACAGGAACGCACACAGCCCTCTAGTGTCCAGAACCCCACAGCGATCCACTCGGCCAGGGATGACTACCTGAAGGTGTACTGGCGCCATGCGGCAGGGGACTTTGACTACTACCAGGTGGTCATCAAGCACAACAATATCTTCCACCAGAACAAGACGGTTATGAAGAGCCAGAACGAGTGTGTGTTCAACGGCCTGGTGCCCGGGAGGCTGTACACTGTCATCGTCAGCACCTGGAGCGGGAAGTATGAGACCAGCGTGTCTACGGATGGAAGGACCTTCCCTGCGGCGGTGAGGTCACTAGCCCTAGCTGAGCGGGGAACGGAGGACCTGCGTGTCACCTGGTTGGCTGCTCCGGGGGACGTTGACCACTACCAGGTGCAGCTCCTCTTCAACGACATGAAGGTGTTCCCGCCCATCACCCTGGGCAGCAGCGTGGGGGagtgtgtcctctcctccctcaccccggGACGCCTCTATAAGATCCATGTTTCTACCTTTAGCGGCCCCAACCAGAGGGCCCAGTTCATAGAGGGCAGGACAGTCCCCAGCAAAGTCAAGAATATCCACGTGAGTAACAATGGCCAGAGCAGCAGTCTGAAAATCAGCTGGACCCCGGGGCAGGGTGACGTGGACAGCTACTCCGTGTCCCTATTGCTGGGTGGACCAGAGGCACGCAGGCTGGAGACGCGGCCCGTACCCAAACACCAGAATGAACTAGGGTTCAGCTCCTTGCAGCCTGGGCAGCTGTACAGTGTGACCATTAGATCTATCAGTGGCATACTGTTGAATAACAACACGGCCAGCGGACGCACCGTCCCTTCTGCAGTGACTGGGCTGCAGGCTGACAACAGACACACCACCTGCACTATACAGGTGAGCTGGCAGGAGGCCCGGGGCGTGGCAGACGGATACAGCCTGCAGCTCCTGGACGACAGGGGACACCTGGTCACCAACAGCTCCCAGACATCCTCTGGCTCCATGCCGCTCCAGCATCGCTTCGACGGCCTCACCCCAGGGAAGAGGTACCGCGTCCTGGTTCACACCACCAGCGGAGGGGTCCACAGCGAGGGCGTCGAAACTGAAGCACGTACACGTCCGGCGGCAGTCAGCGACCTCTCCATCCAggccaacagcagcagcagcctgtCCTTCCACTGGTCTCCCCCGCAGGGAGAGTTCGAAGGTTACGACCTCTACCTGTACAACGGAGATGACACGCTGTACGACCGGCGTAGCGGCCAGCCCAGCACACTGCAGGTCTCCTTCCAGGGCCTGAGGCCTGGTGCCCCCTACAGGATGGTGGTGTTAACACGCAGCGGAGAGCAGACCAACGACTCAGCTATCTGGGCCAGGACTATCCCGGCTGCAGTGACCTCCCTCCAGGCACAGAGTCGTAACCAGTCGGAGATGTTGTGGGTGTCATGGAAGCGGGCGGTGGGGGAGCTAAGTGGCTACCTGCTGTCCCTCTACAACCCAGATGGCTCCCAACAGGCAGAGGAGACGTTAGGGCCAGACGCCATGGAGCACGTCTTCCCCACGCTGATCCCCGGACGTCTCTACCATGCTGTCATCCTCACACGCAGCGGAGAGCTCACCAACAGGGCCACCGCTCATGGACGTACCGCCCCCAGACCCCCTACCTCTGTATCATTTGGTGGAGTCACCAACACCTCCCTGGAGCTGACCTGGAGTGGTCCTGCAGGCAGCGACTATGATGACTTTGACCTGCAGTGGGCCCCCAGGGACCACCTGTCTGTATTCAACCCCTACCACACCCGGACCTCCGGGAGCCGCATTCTGAAGGGGCTATACCCAGGACGCCTGTACAACTTCATCCTGCGTACCGTCAGTGGggctggtggtggtgttggtggtggtgggagcTCTGCCTACAGCCCACCCATCTACAAGAGCATTCGAACAAAGCCAGAGCGTGTCCAGTACCTGCACTGCCGCCCCCAGAACTCCACCTCCATCTCCTGCTCCTGGGCCCCTCCGGAGGCCGACTTTGACTCATACACTATTGAGTGCCTCCAGGACTCCCACGCCCTGGTGTACTCCCAGAGGACAGGCCGCGACAGAACCCTCTACCACATCACCCAGCTGGAGCCACACAAGCGCTACACCGTCTCCGTCAAGGCCATCTCCGACAGCATGACCAGCGAGGCCGCCGAGGACAGCGTGGTCACCATGATCGACCGTCCACCCCTTCCTTCCCTGACCACTCGGGTTAACGACAGGGCTgctcttgtcaccaaaaacaccaTCTTCTTCAAGTTTAACTGCAGCTGGTTCAGTGATGTCAATGGAGCCGTCAAGTTCTTCACAGTGGTGGTGACCGAGTCTGAAGACGATGAAAACCTTCAACCAGAGCAGCACCACCCTCTGCCTTCTTATCTGGACTACAAATCCAACAGTTCCATCAAGGCCTACCAGACCAGCTACTTCCCTAGCCGCTGCACAGAGGGGCCAGGAGACAGCGGGACTCAGAGCTTTGAGATCAGCCTGGGTACAGGCATGGACACCCTCGGGGGTGGCTGTGACCACCTACAGGCCCAGGACAGGGAGCAgaacccagacacacacagagaccacaACCCATTCTGCGATGGCCCACTCAAACCCAAAACTGCATATAGgcTCAGTGTGCGTGCGTTCACCCAGCTCTTTGACGAGGAGCAGAGCAGATACAACCCACCCCTCTACACAGACACTTACCTGTCCCTTCCCCTGGTAACAGAAGCAGAGCCCCTGAGCGGTGTGATCGAGGGCATCAGTGCCAGTATGTTCCTCATTGCCATGATGGTGGGAGTCACTGCACTGCTCATCTGCAGACAGAAGGCTCGCAAAGTGAGTGTGCAGGAGGGGCCAGTGGTCCGAATgagcatgaggagagagaggccCACCTCAGGAGTGCACATGGGCGTCAGGGGTAATCGTCGTATTTCAAGCCCCATCAAGATCATGCACTTTGAGTCCCACTACATTAAACTCCAGGCTGACTCCAATTACCTGCTGTCTGATGAGTACGAGGACCTGAAAGACGTAGGAAGGAACCAGCCCCTGGACACAGCCCTGCTGCCAGAGAACAGAGGGAAAAACCGATACAACAACATCCTGCCCTACGATTCGACCCGTGTGAAGCTGTCCTATGTGGATGATGATCCGTGCTCTGACTACATCAACGCCAGCTACATTCCTGGGAACAACTTCCGTAGGGAGTACATCGCCACTCAGGGCCCACTTCCTGGAACCAAAGATGACTTCTGGAAGATGGTGTGGGAGCAGAATGTCCATAATGTTGTCATGGTGACCCAGTGTGTGGAGAAAGGCAGGGTAAAGTGTGATCACTACTGGCCCTTCGACCAGGACCCTCTGTATTACGGAGACCTCATCGTTCAGATGTTGTCTGAATCTGTGCTGCCAGAATGGACTATCCGGGAATTCAAGATCTGTAGCGAGGACCAGTTGAACTACTCCAGGGTGGTGCGTCAGTTCCACTACACGGTGTGGCCTGACCACGGCGTCCCAGAGACCACCCAGTCACTCATCCAGTTTGTCAGGACTGTCAGGGACTACATCAACAGGACCTCCGGGTCTGGGGCTACCGTGGCTCACTGCAGTGCTGGCGTGGGCCGCACAGGCACCTTCATATCCCTGGACAGAGTGCTGCAGCAGCTGGACACCAAGGACACAGTGGACATCTACGGAGCTGTCTTCGACCTGCGTCTCCATCGCTCACACATGGTTCAGACTGAGTGCCAGTATGCTTACCTGCACCAGTGTGTGAGGGACGTCCTCCGAGCCAGGAAGCTTCGCAGTGAGCAGGAGAACCCGCTCTACCCCATCTATGAGAATGTGAACCCTGACCCCCAACGAGATATGGTATATGCCAGTTATTAAAGATTGTAAGGACTACTgaaggagagaaaaaagaaaacagTTTGTACTTTCACAAGTATAGCACTGCAGGGATACGTGGCAATTTTATTTTTCTACTATTTTTGTTGATTGTTCTTTCCAGATATTATTAAATATAGTAAAATGTATAGCTATTTAATTATATCAGATAATATGAAGTTTAACTGAATTGTATATACATGTCTtatatctgtgtgtttgtgtatatgctTTACATTTGCATTGTTGGCATTTGTACAcagttttttcaattttttttgttaAGCTatcatttgcacattattatgtGGCACAGACCAAAAAACATTATACACtgaaaactgtaaaaaaaatctaataatacatcaatcaaattCCTATAACAGTATTCACATATTCAATAAGTGTATAGGCTACTGTAACTTTCACAAGTCACTTTTCTGAAATGTTAGACAAAAATGATTTCTGTTTGAAGTTACACTTATTTTCATAAGCACTGAGGACATACATAAATATATGATATATGTATGTAGATGAATACATTATACATGTATTTGTAGATATTGTATAACTGTGATATATCGCTTGAATATAAAAAAGGATTATCATATGCGTTATGAAAGCACACCGTGTATGTTGTGTAATCCACATTTGTGTGTAGCCTATGTAAAATAAGATATGATGTATTTTATCATCATGTCATGGAACTACAAATCACACATCTGTAAATCCACAACCCTACATTGTCAACATGACTGTAATCATATGAGCGAATGATTGGATTCTGTGAATCGTTACACAAATGATAGTAGTTACTGAATGCAGTTTTCCCATGTTGCAATCAATGTAAGCCTGTAATAATATCAAGATGAGGGAATTAATATATTCTTCAAGTGTTTCAATAAAATACTTACataactgaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227798 lncRNA upstream 17949 89821773 ~ 89822363 (+) True G201241
TU227783 lncRNA upstream 32549 89806925 ~ 89807763 (+) True G201235
TU227676 lncRNA upstream 123895 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA upstream 162987 89675961 ~ 89677325 (+) True G201176
TU227615 lncRNA upstream 304439 89535492 ~ 89535873 (+) True G201087
TU227825 lncRNA downstream 15487 89898732 ~ 89898970 (+) True G201267
TU227826 lncRNA downstream 15857 89899102 ~ 89899321 (+) True G201268
TU227835 lncRNA downstream 23525 89906770 ~ 89907191 (+) True G201275
TU227850 lncRNA downstream 26836 89910081 ~ 89910283 (+) True G201287
TU227888 lncRNA downstream 75140 89958385 ~ 89959871 (+) True G201322
XM_021576501.2 mRNA upstream 47213 89772599 ~ 89793099 (+) False LOC110499385
XM_021576509.2 mRNA upstream 47213 89772599 ~ 89793099 (+) False LOC110499385
XM_036958577.1 mRNA upstream 47213 89772599 ~ 89793099 (+) True LOC110499385
XM_021576456.2 mRNA upstream 100094 89728940 ~ 89740218 (+) False LOC110499364
XM_021576555.2 mRNA downstream 112 89883357 ~ 89894419 (+) False LOC110499418
XM_021576565.2 mRNA downstream 1706 89884951 ~ 89894419 (+) True LOC110499418
XM_021576574.2 mRNA downstream 41046 89924291 ~ 89929501 (+) True LOC110499430
XM_036958727.1 mRNA downstream 53901 89937146 ~ 90034466 (+) False LOC110502295
XM_036958647.1 mRNA downstream 53901 89937146 ~ 90043824 (+) False LOC110502295
TU227536 other upstream 417874 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1972345 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2303384 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2343577 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2689822 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 563873 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 833697 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1353780 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1483092 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1738756 91622001 ~ 91624293 (+) True G203414

Expression Profile