RNA id: XM_036958727.1


Basic Information

Item Value
RNA id XM_036958727.1
length 4282
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110502295
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89937146 ~ 90043824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGTTGTAAGCCTTGGCATGGTGGGTTTAGGCAGAAATAGGACACAGCCTTGGCTACACTTGTCCCcaccacattttttttgtcactctTTAGCCACCGCGCAACGCACCTCCTTTCAAATTGAGAACGCATTCTCATCTGGAATACGCCTAGGGTCCACGCCtactgcccttaaccaacctgCGCTCCCCGAAATGCCatggtctggtctagtctagaCTGTCTCATCCGCGGAGACACATTTTTCTCTCGAGTGTTTTTACAATTTGAGGCTACAGTCGTATGTGAAATTTGCATTCAGCAGCGTAGTAGTTAAAGTGGTACTGAATGCGTTGTTTTATGTTCTGTGTGTTGCCCGCACTCCAGCAGACCGCTACAGTAGGAAGATGGCGTCGGAGGGAGCGAGCGGGGAACAGCGTCCTCCGATACAAACACTGGCAACAACAGTGCTTGGAAGTGTCGAAGCGaaatGTGAGTTTAACATGGATAATCTGAGCAAGCCGGAGCTCCTGACCCTGCTCAGCATCATGGAGGGGGAGCTGGAGGCCCGGGACCTGGTCATAGAAGCCCTGAGGGCGCGGCGTAAGGATGTGTTCCTCCAGGAGCGTTACGGCCACTTCAGTCTGACGGACCCCTTCCTGGCCCTGCAGAGGGACTTTGACTGTGTCCCCGGGGGGGACAAAGAACGCCGGCCAGTTGGCTCCAGCCCCATCTCAGTCCTGGAGGCAGTCATGGCGCACTGCAGGAAGATGCAGGAGAGGATGTCAGCACAGCTGGCTGCTGCCGAGAGCAGGCAGAAGAGGCTGGAGATGGAGAAGCTACAGCTGCATAGTCTGGAGCAGGAGCACCGTAAACTAACCGCCCAGCTAAAGGACGAGCGGGAGAAGAACAAGCACATGGTTATGATGCTGGTGAGGGAGTGCAAGCAGCTGGCGACGCGCGTGGTGGAGGAGTCGCAGCGCTTCGACGAGATTTCTGCCCGGCTGGATGAGGAGAGCCGCTTGGCCGGGCGGCTGCAGGAGGAGATGACAGCAGAGAGGCAGCGTGGACAGCAGATGGAGGCCAAGATGGAGAAGCAGCTGTCAGAGCTGGACACTGAACGCGAGCAGCTGCGTGCCAGGCTGGGccgagaggagacagagagcctGAGCCTGCGCCGGCAGGTAGAGCAGCTCAGGACTGAACGGGATGGTAAGGACGTTAAAGACGGTAAGGATGGTAAAGCCGGTATCCCAGCCCGACCGGCTGCAGCTACTGCTGTGAATCCCACCGCTACCACCAACCCCCCACCTCCCAAACACACAGCATCTGTTGCTGTGGCCACAGACCCAGTCAGCTCCCAGACGGCCTCCTGCCAAACGGACCTGCCCCCTCCAGAGGCCGAGGGGCAGAAGAAGACGATCCCCCTCACCATCCCTGTCAAACCCACTCCCACCAACTATGCAGGCCTCAGCCTGCCTAAGACGCCCAGCGCAGGCCGGGGGCTGGTCCACAGCAGCTCAGGAGGACTTCTTCAAACAGGGGAGAATGGAGCCGAGGGCCAGACGCCCCATGGTGGGTTGTACTCCCCTGCCCCCACTTCAGCCCTGCCCATGGGGGTGAGCCCTCGTGTCCAGGCTGCCCGCTACAAGTTCCAGGAGCAGGACCAAAACGGCACATCCTCCCAGAGCAGCCCGCCAACCCGTGACCTATCCCCCACCAACCGAGACAACTTTGCCGCCAAGCAGCAAGCGCGACACACCGTCACGCAGGTCCTCTCACGCTTCACCAGCCCCCCAGCAGGTGGCCCCGGAGCCCTCCGTCCCGGCCTGCCCCACTCCACCTCAGAAGGGGGGCCCTTCCCTGGCCGCCTGGGCCACCCCATCGGCCTCAAGTCCCCCACAGTGGCGAGGATCGACCGGGGAAACCCGCCCCCTATCCCGCCCAAAAAGCCAGGTCTCTCCcagaccccctcccctccccacccgcCCATCAAAGTGGTGGGGGACAGCAACCGTTCCCCCGGGGCGGGGTTAAAACCCGGCACGCCCCAGCTGCCGCCCAAACCCGCCCTGGACCTGGTCCCAGCTTTGACGGCGTCTCAGGTAGGTGCCTGCCCCCCCGCAAGGGGGGTGAGGGGGCTGCACCAGGCCACGTGTGCAGAGTGCCCCCCCGCCAGCGCTGCCATCACTGCTGGCGTCCCTCCATAGTCCCCTCGCTAAACTGCGGTGGGCCCGTTGCCCTGGACGACGGACGCCCCCTGCTCCTCCAAGCTGCTTCCCAGGAAATGTCACTTTATTGTCAATGCTGCTTAACCGAGATCCAACGGATAATATTAGTCTCCTTGAAGACCACCCAACCTCTGCTTTGTTTTCTGCTGCTCAAAATGGACGCTCAGacTGCGTTAACCTGCTGCTGACTTCAGGGGTGTCTACTGATGTTTCTGATTTAAACGCCTTTACACTTTGCCGCCTCACATGGACACCACAGGTGTGTGGAGGCCCTGGTGGTCGGTGGGGCTGATGTGGACCAAAGACCCCTCTGTTAATGGCCAGCAGAGCCGACAGGCTGGACTGTACCAGTGCCTTGGTCAACGCCAGGGCCGACCGCTCAAGAGCCACCACCGACAGCTGCAAGGCTCTCCACGAGGCATTCAGCTTAGGACATGTAGACACTCTGCGGCTCCTCCTCTGCCACCCTGCCCCTGACTGTACCCacaccatgaccctaaccctgactgtACCCACACCATGACCCTGACTGCAACCATAGTCCTGGTCCAGCCACGATCCCGGTCTTGTCTAGCACCTTGCTCAACCAGGATAACTGTGAGGGCTGGACCACTGCACACATCACTGCTGCCAGGGGCTTCAAGACGTATCCTCCAACCAGAGCCAAGTTTACCGAGGTGTTGCAGTCTATTTTGAGCTGTAACGCAACACGGTCCAAACAGCTGCTGTCCCTGACCGCCTCCTGACCGCCTCCTGATTCAAGTTTGAATTTCCCCTTGTCAGCATGATGGAATGGATGGCACCCAACGGAATACCAAGCACCCAGCGACTCCCTGCTGAACTGAATCGCTTATATAAATGTGAATCTTTCTTATTCTCTCTGATAAATCGCTCTTACAGTGTAAGTTGATTCCAGGGGAATCACTATGGGAAGTATGGGTCTTAGAAAAATTTGTTTCCATTTGATTCACTGAATGAATCACCAGCCCTCTGTTATCTCTCAACGTTACTCACTATTTAATTGGACATTTAGGAGTAAATAGTAGATGAATAACAGGCTGTAAAATAAAACAaacttttttttgttaagaatacATTTTTGTCTTATGAATGACTGTCAATAAAGTTTAATTTAGTTGTATTCACATTCACAGGTAAAAGCTGAATTGCAGTGACTGTTGGATGAATAGTTTTGGAAATAATTGACTCCTTGATGATTATTATTGCTGATTATTGATATCGGGGCTCTTCCAGGCACCTGGCATTGCAACTGGTGTAGCAAAggtcatagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatctctctctttctgtttctgtatCACACACATCCTTACACAGGGCAGCTCTGTTGGATGACACTCGTCCCTGGGTCCTGTCCAAAGGTGTGACCGGGCCAAGCTGGAGAGGGCTGGGCCACGAGCCTAATTGTTCTTGGCCCAATCACAACACACCACACTCACACTGAGAGGCTGCccaaaataaacacacacacacacacacacacacgttgggctctattcaatccacatcgcggaagttcagctttacagcgtgattgaaatttaaaggcaatgttcccgctttagtggagactgcattcacaatAAACACTGAATATGTCGACTTAGTCGGAAATTACCATTAAGTTTCTATTGCGGAATCTGTcaagattgaatagagcccttttgtcacgttctgaccttagttcctttgtgatgtctttgttttagaatggacagggcgtgagttgggtgggcagtctatgttattttttctatgatttggtatttctgtgtttggcctggtatggttctcaatcagaggcagctgtcaaccgttttccctgattgagaaccatacttaggcagcctgttttcacccttgagttgtgggtgatatgttctgtttagtgtgttttgcacctgacggagctgtttcggttgtgcttttttgtttctttgtttgatGTTGTTCAGTTAAAATAAATAAGATGAAcaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227850 lncRNA upstream 26863 89910081 ~ 89910283 (+) True G201287
TU227835 lncRNA upstream 29955 89906770 ~ 89907191 (+) True G201275
TU227826 lncRNA upstream 37825 89899102 ~ 89899321 (+) True G201268
TU227825 lncRNA upstream 38176 89898732 ~ 89898970 (+) True G201267
TU227797 lncRNA upstream 53908 89882874 ~ 89883238 (+) True LOC110499409
TU227842 lncRNA downstream 487 90034953 ~ 90035952 (+) True G201279
TU227949 lncRNA downstream 34824 90069290 ~ 90070243 (+) True G201379
TU228506 lncRNA downstream 96302 90130768 ~ 90130971 (+) True G201848
TU228511 lncRNA downstream 101675 90136141 ~ 90136370 (+) True G201851
TU228549 lncRNA downstream 150155 90184621 ~ 90184836 (+) True G201888
XM_021576574.2 mRNA upstream 7645 89924291 ~ 89929501 (+) True LOC110499430
XM_021576555.2 mRNA upstream 42727 89883357 ~ 89894419 (+) False LOC110499418
XM_021576565.2 mRNA upstream 42727 89884951 ~ 89894419 (+) True LOC110499418
XM_036958598.1 mRNA upstream 53901 89830947 ~ 89883245 (+) False LOC110499409
XM_036958742.1 mRNA downstream 96074 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA downstream 97539 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA downstream 104211 90138677 ~ 90170115 (+) True asz1
XM_021576610.2 mRNA downstream 148815 90183281 ~ 90196936 (+) True wnt2
XM_036958868.1 mRNA downstream 543454 90577920 ~ 90594338 (+) False cpa5
TU227536 other upstream 514708 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2069179 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2400218 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2440411 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2786656 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 412652 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 682476 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1202559 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1331871 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1587535 91622001 ~ 91624293 (+) True G203414

Expression Profile