RNA id: XM_036958730.1


Basic Information

Item Value
RNA id XM_036958730.1
length 5785
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110502295
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89937146 ~ 90043824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGTAAGCCTTGGCATGGTGGGTTTAGGCAGAAATAGGACACAGCCTTGGCTACACTTGTCCCcaccacattttttttgtcactctTTAGCCACCGCGCAACGCACCTCCTTTCAAATTGAGAACGCATTCTCATCTGGAATACGCCTAGGGTCCACGCCtactgcccttaaccaacctgCGCTCCCCGAAATGCCatggtctggtctagtctagaCTGTCTCATCCGCGGAGACACATTTTTCTCTCGAGTGTTTTTACAATTTGAGGCTACAGTCGTATGTGAAATTTGCATTCAGCAGCGTAGTAGTTAAAGTGGTACTGAATGCGTTGTTTTATGTTCTGTGTGTTGCCCGCACTCCAGCAGACCGCTACAGTAGGAAGATGGCGTCGGAGGGAGCGAGCGGGGAACAGCGTCCTCCGATACAAACACTGGCAACAACAGTGCTTGGAAGTGTCGAAGCGaaatGTGAGTTTAACATGGATAATCTGAGCAAGCCGGAGCTCCTGACCCTGCTCAGCATCATGGAGGGGGAGCTGGAGGCCCGGGACCTGGTCATAGAAGCCCTGAGGGCGCGGCGTAAGGATGTGTTCCTCCAGGAGCGTTACGGCCACTTCAGTCTGACGGACCCCTTCCTGGCCCTGCAGAGGGACTTTGACTGTGTCCCCGGGGGGGACAAAGAACGCCGGCCAGTTGGCTCCAGCCCCATCTCAGTCCTGGAGGCAGTCATGGCGCACTGCAGGAAGATGCAGGAGAGGATGTCAGCACAGCTGGCTGCTGCCGAGAGCAGGCAGAAGAGGCTGGAGATGGAGAAGCTACAGCTGCATAGTCTGGAGCAGGAGCACCGTAAACTAACCGCCCAGCTAAAGGACGAGCGGGAGAAGAACAAGCACATGGTTATGATGCTGGTGAGGGAGTGCAAGCAGCTGGCGACGCGCGTGGTGGAGGAGTCGCAGCGCTTCGACGAGATTTCTGCCCGGCTGGATGAGGAGAGCCGCTTGGCCGGGCGGCTGCAGGAGGAGATGACAGCAGAGAGGCAGCGTGGACAGCAGATGGAGGCCAAGATGGAGAAGCAGCTGTCAGAGCTGGACACTGAACGCGAGCAGCTGCGTGCCAGGCTGGGccgagaggagacagagagcctGAGCCTGCGCCGGCAGGTAGAGCAGCTCAGGACTGAACGGGATGGTAAGGACGTTAAAGACGGTAAGGATGGTAAAGCCGGTATCCCAGCCCGACCGGCTGCAGCTACTGCTGTGAATCCCACCGCTACCACCAACCCCCCACCTCCCAAACACACAGCATCTGTTGCTGTGGCCACAGACCCAGTCAGCTCCCAGACGGCCTCCTGCCAAACGGACCTGCCCCCTCCAGAGGCCGAGGGGCAGAAGAAGACGATCCCCCTCACCATCCCTGTCAAACCCACTCCCACCAACTATGCAGGCCTCAGCCTGCCTAAGACGCCCAGCGCAGGCCGGGGGCTGGTCCACAGCAGCTCAGGAGGACTTCTTCAAACAGGGGAGAATGGAGCCGAGGGCCAGACGCCCCATGGTGGGTTGTACTCCCCTGCCCCCACTTCAGCCCTGCCCATGGGGGTGAGCCCTCGTGTCCAGGCTGCCCGCTACAAGTTCCAGGAGCAGGACCAAAACGGCACATCCTCCCAGAGCAGCCCGCCAACCCGTGACCTATCCCCCACCAACCGAGACAACTTTGCCGCCAAGCAGCAAGCGCGACACACCGTCACGCAGGTCCTCTCACGCTTCACCAGCCCCCCAGCAGGTGGCCCCGGAGCCCTCCGTCCCGGCCTGCCCCACTCCACCTCAGAAGGGGGGCCCTTCCCTGGCCGCCTGGGCCACCCCATCGGCCTCAAGTCCCCCACAGTGGCGAGGATCGACCGGGGAAACCCGCCCCCTATCCCGCCCAAAAAGCCAGGTCTCTCCcagaccccctcccctccccacccgcCCATCAAAGTGGTGGGGGACAGCAACCGTTCCCCCGGGGCGGGGTTAAAACCCGGCACGCCCCAGCTGCCGCCCAAACCCGCCCTGGACCTGGTCCCAGCTTTGACGGCGTCTCAGGCTGGCGTCCCTCCATAGTCCCCTCGCTAAACTGCGGTGGGCCCGTTGCCCTGGACGACGGACGCCCCCTGCTCCTCCAAGCTGCTTCCCAGGAAATGTCACTTTATTGTCAATGCTGCTTAACCGAGATCCAACGGATAATATTAGTCTCCTTGAAGACCACCCAACCTCTGCTTTGTTTTCTGCTGCTCAAAATGGACGCTCAGacTGCGTTAACCTGCTGCTGACTTCAGGGGTGTCTACTGATGTTTCTGATTTAAACGCCTTTACACTTTGCCGCCTCACATGGACACCACAGGTGTGTGGAGGCCCTGGTGGTCGGTGGGGCTGATGTGGACCAAAGACCCCTCTGTTAATGGCCAGCAGAGCCGACAGGCTGGACTGTACCAGTGCCTTGGTCAACGCCAGGGCCGACCGCTCAAGAGCCACCACCGACAGCTGCAAGGCTCTCCACGAGGCATTCAGCTTAGGACATGTAGACACTCTGCGGCTCCTCCTCTGCCACCCTGCCCCTGACTGTACCCacaccatgaccctaaccctgactgtACCCACACCATGACCCTGACTGCAACCATAGTCCTGGTCCAGCCACGATCCCGGTCTTGTCTAGCACCTTGCTCAACCAGGATAACTGTGAGGGCTGGACCACTGCACACATCACTGCTGCCAGGGGCTTCAAGGCCTGTCAGAGTCGTGCCTTGATGAGCTGGCCCTGGAATCCCTCATGCCTCTTCAGCTGCATCCCTCATGCCTCTTCAGAACTACATCTTcctgGGGACCTGTCAAGAGTACCTAGCCAATCAGACTTCCCTCTGCATCAAGACGAAGCAGGAGTCTGTGGGTGTGGCCTGTGACATCTGGGTGGAGGTGGACAGGGGTCTGACTAAAGAACATCTGTTGGACACCTTCATCAACTGTGTCCAGGTGGCTGGCCCGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCTATCGTCTCCCGGCTCTGGAATATAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCCGGCTCTGGAACAGAGTGGTGGTCCTTCACATGGAGTAGGCCATCGTCTCCCGGCTCTGCAACATAGTGGTGGTCCTTCACATGGAGTAGGCCATCGTCTCCCGGCTCTGGAACATAGTGGTGGTCCTTCACATGGAGTAGGCCATCGTCTCCTGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCCGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCCGGCTCTGGAACAGAGTGGTGGTCCTTCACTTGGAGTAGGCCATCGTCTCCTGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCCGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTGGAACATAGTGGAGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTGGAATATAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTGGAATATAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCACCCGGCTCTGGAACATAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTGGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTTGAACAGAGTGGTGGTCCTTCACGTGGAGTAGGCCATCGTCTCCTGGCTCTGGAACATAGTGGAGGTCCTTCACTTGGAGTAGGCCATCGTCTCCTGACACTGGGCATCACCTAGCAAACACCGCCTGAGCTCGGGCCAGTGAGCAGTGGTCAAGGCTGCTCTCAGTATCCTGGTCAACAAAGCCGTCCTGCAGGGATGCCCTCTGCCACGGCACGAGATTAACAGGCACCTGTTGAAGTTCCGAGGTGGGACCTTCCCTCTCTCAACCATTGGCTCCTGTAAAGGGGGCGGCGGCAGGAAGGGGTAGGACAGTAGCATGTGGAGATGAGCCAATTACCAGCCCACGAAAGAATGGGAAACCCCGCCTCCAACTGGAGCTGTGGAGATTCTCTCAGAGAAGGGTCATTGTCCAGCACTGATGTCCTCTTCATCACCAACGGCAATACTCCGAGTGTTGTAGATGGGGACCATGtgagtctgtctctgtgttcttaCAACAAGACTGATCTGATCAGGGAGTTACAGACCATGTGCTCCAGGAAGTCAGACATCAGCAAGATTGCTCAGTCCAAGGAGGACTTCATCGTCTTCTCTGGCTCTCCAAATGGACAATCACCCTGCTGCAGGACCGACCACGAAGCAAACGCTCTACCACAGACCGGCAGCCGTCACTCCAACCCCATCCCTGCCTCCAACCCCATCCCTTAGGCAGCCTCTTGCAAGAGGCGATCGATGTCCTACCCATATCCCAGCTCCCTATCTCCAGCAGCAGGGGACAGCAGCCACTAgcctagcagcagcagcagtgccTCCGCACCACGAACACCCACTACGACCACTAACTGCAACGCAAACAGAACTGAAccaagcagcagcagcaaaacaAGGCAGGCCCCAACCAgacacaacaaacaacaacaacaacaacgaaaaCAACCAACAACACAAGGAAATCTCGATCCTACACCGAGACCTGCATGAAAAACAACAACCATACCAAGTACTAGATGAACTCCCTTTCTCCTCTtttccccttccttccttccttccttcacctTCCTTCCATTCTTCCTTCaccttccttccatccttccatccttccttccttccttccttcccaccACTCTGCTTTGATCCCTCCATGTTGTAAAGTTAGGGTTAATGACGACCTTTTAGTATTTGTACTTGTTATCCGTACTTGTTACACTGTATAACAATTGTGTACTTGGGGACCATAGTTTTATGATATTATACAGTATTTAAGTATTGAAAGAAGttcaaaaaaagaaagaaaataaatttGCAGGGAATTATGTCAAAAGAAAAATAAGTACTTAAAACAGGTTTTACCTTTTGGGGTGAAAGAATAGAAACAGGACATTTTTAGCTATTACGTATTTTCGAATATTCAAGTGTGTTATGTTTAAATAGTTGCAAGGTTGGTTTAAATACTGTTGAAATGAACAAAGGTTTTACCAAATATTTGTAAATAAGAACGATTAGTAAAATGAATGGTATATAGATTGGTGTATGTGGTATTAAGCTTGTACAGTGAAGaaaagtggaagaaaaaaaacCTTGTATATATATGTCTGTAATAATAGGAGAATTCCAAGTGATTGGAATGTGGCAATAAGTAAAGATAATTGCAAACACGGGACATTTTCTTTCTTTTGACTATGAACCATAAATAAATACTTTAAACTACCCAGAATTCCATCCGAGTCACGGCTCAATTCACCTTTGACCTCTAAGTGGAGCCCGATATAAATTTCAAAGCAGcacgtttttttttctctttcttttttaaaacgttttattaatttattttgggagggggggggggtgtgttattTTGAATGGCCATTGTTGATTGATGTACAGGATATATTTTAGTCAGTCTTTGGTGTTCTGTATGATAGCTCTCTGAAGTTTAAAGAAATGTCCTGGTTCCTTTAAGCACAACCATTAAAACTGCACTGTCAACCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227850 lncRNA upstream 26866 89910081 ~ 89910283 (+) True G201287
TU227835 lncRNA upstream 29958 89906770 ~ 89907191 (+) True G201275
TU227826 lncRNA upstream 37828 89899102 ~ 89899321 (+) True G201268
TU227825 lncRNA upstream 38179 89898732 ~ 89898970 (+) True G201267
TU227797 lncRNA upstream 53911 89882874 ~ 89883238 (+) True LOC110499409
TU227949 lncRNA downstream 25466 90069290 ~ 90070243 (+) True G201379
TU228506 lncRNA downstream 86944 90130768 ~ 90130971 (+) True G201848
TU228511 lncRNA downstream 92317 90136141 ~ 90136370 (+) True G201851
TU228549 lncRNA downstream 140797 90184621 ~ 90184836 (+) True G201888
TU228553 lncRNA downstream 144931 90188755 ~ 90188962 (+) True G201892
XM_021576574.2 mRNA upstream 7648 89924291 ~ 89929501 (+) True LOC110499430
XM_021576555.2 mRNA upstream 42730 89883357 ~ 89894419 (+) False LOC110499418
XM_021576565.2 mRNA upstream 42730 89884951 ~ 89894419 (+) True LOC110499418
XM_036958594.1 mRNA upstream 53904 89835967 ~ 89883245 (+) False LOC110499409
XM_036958742.1 mRNA downstream 86716 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA downstream 88181 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA downstream 94853 90138677 ~ 90170115 (+) True asz1
XM_021576610.2 mRNA downstream 139457 90183281 ~ 90196936 (+) True wnt2
XM_036958868.1 mRNA downstream 534096 90577920 ~ 90594338 (+) False cpa5
TU227536 other upstream 514711 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2069182 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2400221 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2440414 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2786659 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 403294 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 673118 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1193201 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1322513 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1578177 91622001 ~ 91624293 (+) True G203414

Expression Profile