RNA id: XM_021580291.2


Basic Information

Item Value
RNA id XM_021580291.2
length 1448
RNA type mRNA
GC content 0.50
exon number 11
gene id cep41
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90599314 ~ 90606949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTCATTGATTGGTCAATGGTTGCTCTCGGCTCAATCAGCGCCAAGTTTGTTAAACTTGGAACTTTGGGTTTGGTTTTTCTCTATTCCGTTTGAAAATATGTCGACAAAGAGCAGTATCGGCAACACGGAGTACATGAAAAGGAGAATACCTCAGAACCCCAAATATCAACATGTGAGGACAAGGCTTGACACAGGATGCAGCCTGACGAAGTATGTGGAGAGGCTGGAGGAGATAAAGAAAAATTACAGGTACAGAAAGGATGAACTCTTCAAAAGGCTTAAAGTTACAACATTTGCACAGTTGGTAATTCAGGTAGCATCGGTTTCAGACCTGAATGAAAGTGTGAGTGATGGAGAAACACCAAGGCTGGAAGCCGACATGGAGCGTCTGTCTGAGCAGACCAACGGTTCCCCCCTGCCTACGCCCACACCTGCTCAGTTTTTCGACAACAACAATGACGCAGGGGACGCTGGCTACTCCCCCAGGTCGACACTTCAAAGTGTAATAAGCGGGGTGGGAGAGCTGGATCTGGATAAGAACGGTCAGAAGACAGTGACTCTGACAACCGTGTCCAGCCCTCGGCTTCCAGATGGACCCTACCCAGACTGTCCCTACCTGCTGCTGGACGTCAGGGACAGAGAGCAGTACGACCAGTGCCACATCATCAGCGCATACAGTTTCCCCATCGCAACCCTCTCAAGAACAATGAATCCCTATACCAAGGAGGTGCTGGATTATAAAAATGTTTCTGGTAAGATCATCATCGTATATGATGAGGATGAGAGGATAGCTGCCCAGGCAGCCACTGCCATGTGTGAACGGGGCTTCCAGAACCTCTTCATGCTATCTGGAGGCCTGAAGGTGATTGCGCAGAAGTTTCCAGAGGGGATGACAACAGGCACCATCCCGGCATCGTGCCTCCCGTCTCCCAAGGTGACAGCGGGCAGAAGGCGCTATACCCACAGACAGGTTTTCATGCCAGCCGATAGGAAGTGGAGGTTCACCTCAGACGACATGGCCAACATCCAGGCACACTTGGAGGAGATGCTCGTTCCCTCGGACACCAACAGCCGGTTCAGCAGCCGCATGTCCACCAGCAGTGCCCAGTCCAAAGCATCCAGCGCTCGGAGTCTACACACTTCCTCTTTAGCCGGCTCTGAAACCGCCAGATCCCAGAGCAGCCGACCGTGGAAATAACCCTTAACCCAAATAAAGTCTTATTTCACTACCACCCCCCATGTGCCCCTCTGTGAAAGGGCCACCAACcaaacccccccctcccccaggaaTACCCAACTGTTGTCCTCAATTGGTGTGTTGATTTTGAATTTGTTGCACAATGAATATAAAAAAATGTCATCAGTGATCGTAAGATGATAATTTATGTATTTGCCTTGCACTCAATTATCATAAACTTGCAGATGTTGCTTTCCTAAAAATGACT

Function

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0015031 protein transport biological_process
GO:0036064 ciliary basal body cellular_component
GO:0005814 centriole cellular_component
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
K16455 CEP41, TSGA14; centrosomal protein CEP41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229155 lncRNA downstream 1596 90598179 ~ 90598453 (-) True G202428
TU229154 lncRNA downstream 2071 90597765 ~ 90597978 (-) True G202427
TU229153 lncRNA downstream 2622 90597222 ~ 90597427 (-) True G202426
TU229140 lncRNA downstream 6933 90590350 ~ 90593116 (-) False G202419
TU229216 lncRNA upstream 92373 90699322 ~ 90699544 (-) True G202485
TU229230 lncRNA upstream 106826 90713775 ~ 90714018 (-) True G202494
TU229241 lncRNA upstream 115935 90722884 ~ 90723135 (-) True G202505
TU229630 lncRNA upstream 135215 90742164 ~ 90742398 (-) True G202863
TU229637 lncRNA upstream 152234 90759183 ~ 90759419 (-) True G202870
XM_036958827.1 mRNA downstream 23576 90557570 ~ 90576473 (-) False tes
XM_036958830.1 mRNA downstream 23576 90557570 ~ 90576473 (-) False tes
XM_036958834.1 mRNA downstream 23576 90557570 ~ 90576473 (-) False tes
XM_036958839.1 mRNA downstream 23576 90557570 ~ 90576473 (-) True tes
XM_021576637.2 mRNA downstream 129860 90464686 ~ 90470189 (-) False cav2
XM_021576723.2 mRNA upstream 439782 91046731 ~ 91157442 (-) False tmtc3
XM_036958924.1 mRNA upstream 439782 91046731 ~ 91157443 (-) True tmtc3
XM_021576729.2 mRNA upstream 607718 91214667 ~ 91219570 (-) True c2h12orf29
XM_021576733.2 mRNA upstream 620149 91227098 ~ 91230202 (-) False lyve1b
XM_021576734.2 mRNA upstream 620345 91227294 ~ 91230204 (-) True lyve1b
TU228979 other downstream 158624 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 990159 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 3273580 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 3696093 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 4636384 85959845 ~ 85963665 (-) True G197554
TU230773 other upstream 982263 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 1180238 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 1791111 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 2355095 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 3705475 94312424 ~ 94312774 (-) False G206742

Expression Profile